##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547863_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1687604 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.393184657064097 31.0 31.0 33.0 30.0 34.0 2 31.795075147961253 31.0 31.0 34.0 30.0 34.0 3 31.85978997442528 31.0 31.0 34.0 30.0 34.0 4 35.640041739649824 37.0 35.0 37.0 33.0 37.0 5 35.50844155382424 37.0 35.0 37.0 33.0 37.0 6 35.56074470077103 37.0 35.0 37.0 33.0 37.0 7 35.94113962754295 37.0 35.0 37.0 35.0 37.0 8 35.95147262035407 37.0 35.0 37.0 35.0 37.0 9 37.67899459825883 39.0 37.0 39.0 35.0 39.0 10 37.211943086174244 39.0 37.0 39.0 33.0 39.0 11 36.89514542511158 39.0 37.0 39.0 33.0 39.0 12 36.143216062536 38.0 35.0 39.0 32.0 39.0 13 35.863460266745044 38.0 35.0 39.0 31.0 39.0 14 36.84851837279362 39.0 35.0 41.0 31.0 41.0 15 37.09569128776656 39.0 35.0 41.0 32.0 41.0 16 37.23318740652428 39.0 35.0 41.0 32.0 41.0 17 37.17524134808877 39.0 35.0 41.0 32.0 41.0 18 37.080265868059094 38.0 35.0 41.0 32.0 41.0 19 37.01530157548809 38.0 35.0 41.0 32.0 41.0 20 36.870769445912664 38.0 35.0 41.0 32.0 41.0 21 36.754709635672825 38.0 35.0 41.0 32.0 41.0 22 36.62832453585083 38.0 35.0 41.0 31.0 41.0 23 36.56333713359295 38.0 35.0 40.0 31.0 41.0 24 36.57865648576325 38.0 35.0 40.0 31.0 41.0 25 36.530623890438754 38.0 35.0 40.0 31.0 41.0 26 36.39346849142334 38.0 35.0 40.0 31.0 41.0 27 36.29692866335942 38.0 35.0 40.0 31.0 41.0 28 36.2339203983873 38.0 35.0 40.0 31.0 41.0 29 36.26698976774172 38.0 35.0 40.0 31.0 41.0 30 36.202342492670084 38.0 35.0 40.0 31.0 41.0 31 36.05362928743947 38.0 35.0 40.0 30.0 41.0 32 35.89189169971154 38.0 35.0 40.0 30.0 41.0 33 35.76999224936656 38.0 35.0 40.0 30.0 41.0 34 35.658627260897696 37.0 35.0 40.0 30.0 41.0 35 35.616001147188555 37.0 35.0 40.0 29.0 41.0 36 35.467089435673294 37.0 35.0 40.0 29.0 41.0 37 35.338479287795 37.0 34.0 40.0 28.0 41.0 38 35.27304272803335 37.0 34.0 40.0 28.0 41.0 39 35.21346002972261 37.0 34.0 40.0 27.0 41.0 40 35.040862666834165 37.0 34.0 40.0 26.0 41.0 41 34.98014285341822 37.0 34.0 40.0 26.0 41.0 42 34.88360006257392 37.0 34.0 40.0 26.0 41.0 43 34.7623204258819 36.0 34.0 40.0 26.0 41.0 44 34.54699265941536 36.0 34.0 40.0 25.0 41.0 45 34.39088435438646 36.0 34.0 40.0 24.0 41.0 46 34.32284173301319 36.0 34.0 40.0 24.0 41.0 47 34.21891924882852 35.0 33.0 40.0 23.0 41.0 48 34.15653553795796 35.0 33.0 40.0 23.0 41.0 49 34.034012718623565 36.0 33.0 40.0 24.0 41.0 50 33.911176437126244 35.0 33.0 40.0 24.0 41.0 51 33.543898924155194 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 11.0 13 3.0 14 28.0 15 30.0 16 128.0 17 305.0 18 639.0 19 1280.0 20 2438.0 21 3752.0 22 5780.0 23 8790.0 24 12909.0 25 18210.0 26 23631.0 27 28583.0 28 31721.0 29 36968.0 30 44023.0 31 53074.0 32 65482.0 33 85310.0 34 151594.0 35 241651.0 36 121057.0 37 144653.0 38 218030.0 39 387446.0 40 74.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.677810671223817 24.90643539598152 30.340648635580386 13.075105297214277 2 29.964375528856298 27.08692323554578 29.047928305455546 13.90077293014238 3 29.16715058746009 25.565002216159716 31.149072886767275 14.118774309612919 4 27.007876255330043 27.857957198489693 29.565111246477255 15.569055299703011 5 23.990699239869066 32.60699785020657 27.99211189354849 15.41019101637588 6 21.34458083768467 41.58985164766142 26.139129795852583 10.92643771880133 7 86.46755992519573 4.29988314794229 6.853918336292162 2.3786385905698255 8 85.67685310060891 3.8551698147195665 6.812972711607699 3.655004373063823 9 81.11897103822935 5.960225266116933 9.168323848485782 3.7524798471679373 10 47.409522613124885 28.108252883970408 13.625234355927102 10.856990146977608 11 38.68988222355482 22.50148731574469 23.53680128750584 15.271829173194659 12 37.63323623314474 21.663613027700812 24.91087956653338 15.792271172621064 13 22.55321746096833 37.107164951019314 24.705025586571256 15.634592001441098 14 15.046657865233787 41.30915783560598 26.009537782560365 17.634646516599865 15 13.667542859580802 28.50088053832534 41.775203187477636 16.056373414616225 16 16.209845437673767 24.070042498121598 40.71583143912908 19.004280625075552 17 15.946157984930116 25.699749467292087 26.326199748282182 32.02789279949562 18 20.244618998295806 27.92444198994551 30.53654767350634 21.29439133825234 19 24.10565511814383 30.374424331774513 24.88160729649847 20.63831325358319 20 27.051369871130902 27.165081381651145 25.3526301193882 20.430918627829755 21 20.384995532127206 31.397709415241966 27.265223358086377 20.952071694544454 22 21.328581823697977 26.81079210525692 26.161765437863384 25.69886063318172 23 18.854008404815346 32.13093830069139 24.61394971806182 24.40110357643144 24 20.62871384519117 27.395526438666888 33.52794849976654 18.447811216375406 25 17.82912341994923 29.094029167980167 30.256150139487698 22.820697272582905 26 17.276090836475856 36.146216766492614 25.02299117565495 21.55470122137658 27 18.8011524030519 35.34117008492514 26.58099885992212 19.27667865210085 28 15.324744430565465 31.401205496076095 34.0400947141628 19.23395535919564 29 16.383168089196282 27.857305386808758 33.04839286941723 22.711133654577733 30 19.146553338342407 32.857352791294645 28.507102377097944 19.488991493265008 31 25.952593143889207 31.805150971436426 21.977489979876797 20.26476590479757 32 26.26072230215145 32.52030689664163 22.356962889398226 18.862007911808696 33 23.90762287835298 32.67893415753933 22.14731655056518 21.266126413542512 34 17.950834437462817 30.80355344026205 25.414552229077437 25.831059893197693 35 18.945262040146858 29.27309961341642 26.76558007684267 25.016058269594048 36 24.862645502143867 29.149610927682083 25.61477692634054 20.372966643833507 37 18.63097029871937 33.44250191395612 28.06588512470935 19.860642662615163 38 17.804413831680893 33.86114277994127 23.911296726009184 24.423146662368662 39 18.270636950374612 32.64972114311177 26.299712491793098 22.779929414720517 40 22.177062865458957 28.18611475203899 25.46622311869372 24.170599263808334 41 16.549498579050535 26.350198269262222 27.87857814985032 29.221725001836923 42 21.669123799185115 28.212187219276558 24.25817905148364 25.860509930054683 43 22.042315614326583 29.16661728699387 25.45283135143079 23.338235747248763 44 19.34577069028042 32.49032355931842 25.834437462817107 22.329468287584053 45 17.994565075693114 35.534817409771485 21.917523305230375 24.553094209305026 46 22.90804003782878 32.04069201068497 24.203663892714168 20.84760405877208 47 19.545580598292016 29.67763764485033 26.675215275621532 24.10156648123612 48 21.21955150615903 26.475049833965787 28.888056676803327 23.417341983071857 49 20.0243066501383 25.830348825909393 29.241338607872464 24.90400591607984 50 17.871965224069154 29.368678908085073 29.516580904050947 23.242774963794822 51 17.069881322869584 31.506739732780915 24.702003550595993 26.72137539375351 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 919.0 1 1729.0 2 2539.0 3 8274.5 4 14010.0 5 10097.0 6 6184.0 7 6162.5 8 6141.0 9 7168.5 10 8196.0 11 9117.5 12 10039.0 13 10217.5 14 10396.0 15 9681.0 16 8966.0 17 8156.0 18 7346.0 19 6962.5 20 6579.0 21 6823.5 22 7068.0 23 7538.5 24 8009.0 25 8948.0 26 12292.0 27 14697.0 28 17203.0 29 19709.0 30 23484.0 31 27259.0 32 30314.5 33 33370.0 34 38878.5 35 44387.0 36 48433.0 37 52479.0 38 57174.0 39 61869.0 40 85592.5 41 109316.0 42 127140.0 43 144964.0 44 156993.0 45 169022.0 46 173251.5 47 177481.0 48 175983.5 49 174486.0 50 159599.5 51 144713.0 52 125726.0 53 106739.0 54 89963.5 55 73188.0 56 64574.0 57 55960.0 58 53511.0 59 51062.0 60 46543.0 61 42024.0 62 36503.0 63 30982.0 64 24520.0 65 18058.0 66 14769.0 67 11480.0 68 9448.0 69 7416.0 70 5676.5 71 3937.0 72 3452.0 73 2967.0 74 2277.0 75 1235.0 76 883.0 77 795.0 78 707.0 79 467.0 80 227.0 81 189.5 82 152.0 83 115.5 84 79.0 85 66.0 86 53.0 87 44.0 88 35.0 89 26.5 90 18.0 91 16.0 92 14.0 93 9.5 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1687604.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.472820367991407 #Duplication Level Percentage of deduplicated Percentage of total 1 75.73368852437096 16.262158894892302 2 10.300507939856644 4.4236191338322195 3 4.053359207325775 2.6111116243755115 4 2.0547760278665974 1.764873461713374 5 1.1940563062397709 1.2819878286576971 6 0.7564221952363723 0.9745510752403411 7 0.5138494963895661 0.7723658552509202 8 0.3915645813039652 0.6726396733446249 9 0.2962161480143665 0.5724536522769763 >10 2.3611765894970613 11.224457139751406 >50 1.0503251847444943 16.84259200708049 >100 1.2859612131406484 40.08130571061703 >500 0.004467081938645516 0.6510627560554406 >1k 0.0033503114539841367 1.2557238018726757 >5k 0.0 0.0 >10k+ 2.7919262116534474E-4 0.6090973850389757 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10160 0.6020369707585429 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4518 0.2677168340440056 No Hit CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT 2751 0.16301217584219996 No Hit CCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC 2131 0.12627369928016288 No Hit GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC 2088 0.12372570816376353 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.92556073581243E-5 0.0 0.0 0.2018838542691295 0.0 2 5.92556073581243E-5 0.0 0.0 0.6766990360297795 0.0 3 5.92556073581243E-5 0.0 0.0 0.9676440681581698 0.0 4 5.92556073581243E-5 0.0 0.0 1.465924470432637 0.0 5 5.92556073581243E-5 0.0 0.0 2.503371644058677 0.0 6 5.92556073581243E-5 0.0 0.0 3.5008212827179834 0.0 7 5.92556073581243E-5 0.0 0.0 4.11601299831003 0.0 8 5.92556073581243E-5 0.0 0.0 5.589285164055075 0.0 9 5.92556073581243E-5 0.0 0.0 6.057759995828405 0.0 10 5.92556073581243E-5 0.0 0.0 6.854096103114237 0.0 11 5.92556073581243E-5 0.0 0.0 8.03743058205598 0.0 12 5.92556073581243E-5 0.0 0.0 8.937997302684753 0.0 13 5.92556073581243E-5 0.0 0.0 9.286598040772597 0.0 14 5.92556073581243E-5 0.0 0.0 9.428218942358516 0.0 15 5.92556073581243E-5 0.0 0.0 9.648649801730738 0.0 16 5.92556073581243E-5 0.0 0.0 10.181713245524424 0.0 17 5.92556073581243E-5 0.0 0.0 10.794890270466293 0.0 18 5.92556073581243E-5 0.0 0.0 11.571672027323945 0.0 19 5.92556073581243E-5 0.0 0.0 11.926376092969678 0.0 20 5.92556073581243E-5 0.0 0.0 12.302826966515841 0.0 21 5.92556073581243E-5 0.0 0.0 12.76282824643696 0.0 22 5.92556073581243E-5 0.0 0.0 13.19657929229843 0.0 23 5.92556073581243E-5 0.0 0.0 13.64775148672319 0.0 24 5.92556073581243E-5 0.0 0.0 13.98159757857886 0.0 25 1.185112147162486E-4 0.0 0.0 14.259802655125254 0.0 26 1.185112147162486E-4 0.0 0.0 14.520468071893644 0.0 27 1.185112147162486E-4 0.0 0.0 14.79002182976575 0.0 28 1.185112147162486E-4 0.0 0.0 15.070774897428544 0.0 29 1.185112147162486E-4 0.0 0.0 15.36503824356899 0.0 30 1.185112147162486E-4 0.0 0.0 15.744629664305133 0.0 31 1.185112147162486E-4 0.0 0.0 16.07616478747384 0.0 32 1.185112147162486E-4 0.0 0.0 16.365628429418276 0.0 33 1.185112147162486E-4 0.0 0.0 16.642352115780717 0.0 34 1.777668220743729E-4 0.0 0.0 16.95468842216539 0.0 35 1.777668220743729E-4 0.0 0.0 17.33410207607946 0.0 36 1.777668220743729E-4 0.0 0.0 17.669192535689653 0.0 37 1.777668220743729E-4 0.0 0.0 17.98324725468771 0.0 38 1.777668220743729E-4 0.0 0.0 18.27650325550307 0.0 39 1.777668220743729E-4 0.0 0.0 18.590854252537916 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTAT 60 0.0 45.000004 29 AATCCGG 25 3.8915845E-5 45.000004 44 CTCCGAT 35 1.2123746E-7 45.000004 45 TACGCTT 30 2.1661072E-6 45.000004 28 GTTCGCC 25 3.8915845E-5 45.000004 27 TACGACG 30 2.1661072E-6 45.000004 1 TTGACGA 25 3.8915845E-5 45.000004 32 GGACGTA 25 3.8915845E-5 45.000004 9 CGCAATC 25 3.8915845E-5 45.000004 18 TAGGACG 60 0.0 45.000004 1 CGCCCTA 25 3.8915845E-5 45.000004 17 CTTACGT 30 2.1661072E-6 45.000004 29 AAGTACG 45 3.8562575E-10 45.0 1 GTTTACG 40 6.8175723E-9 45.0 1 TTTCGCG 75 0.0 45.0 1 CACGCTA 20 7.034227E-4 45.0 19 CATTACG 20 7.034227E-4 45.0 30 TACGATA 20 7.034227E-4 45.0 37 CGGATAG 20 7.034227E-4 45.0 14 CACTACG 40 6.8175723E-9 45.0 1 >>END_MODULE