##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547862_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1604329 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.413248155459385 31.0 31.0 33.0 30.0 34.0 2 31.8008357388042 31.0 31.0 34.0 30.0 34.0 3 31.77745026113721 31.0 31.0 34.0 30.0 34.0 4 35.59415556285525 37.0 35.0 37.0 33.0 37.0 5 35.531978789886615 37.0 35.0 37.0 33.0 37.0 6 35.585919097641444 37.0 35.0 37.0 33.0 37.0 7 35.978415275171116 37.0 35.0 37.0 35.0 37.0 8 36.015967423140765 37.0 35.0 37.0 35.0 37.0 9 37.78633808900793 39.0 38.0 39.0 35.0 39.0 10 37.25383322248741 39.0 37.0 39.0 34.0 39.0 11 36.957738094867075 39.0 37.0 39.0 33.0 39.0 12 36.29896049999719 38.0 35.0 39.0 32.0 39.0 13 36.055777836092226 38.0 35.0 39.0 32.0 39.0 14 37.10318394793088 39.0 35.0 41.0 32.0 41.0 15 37.31164617731151 39.0 35.0 41.0 32.0 41.0 16 37.426885632560406 39.0 35.0 41.0 33.0 41.0 17 37.35343685740269 39.0 35.0 41.0 33.0 41.0 18 37.252288028203694 39.0 35.0 41.0 32.0 41.0 19 37.13690645746602 38.0 35.0 41.0 32.0 41.0 20 36.97114868583688 38.0 35.0 41.0 32.0 41.0 21 36.845745479885984 38.0 35.0 41.0 32.0 41.0 22 36.71853341802087 38.0 35.0 41.0 31.0 41.0 23 36.63352903301006 38.0 35.0 40.0 31.0 41.0 24 36.63563520948633 38.0 35.0 41.0 31.0 41.0 25 36.599245541282365 38.0 35.0 40.0 31.0 41.0 26 36.47633745946125 38.0 35.0 40.0 31.0 41.0 27 36.375296463505926 38.0 35.0 40.0 31.0 41.0 28 36.31881054322399 38.0 35.0 40.0 31.0 41.0 29 36.338252316077316 38.0 35.0 40.0 31.0 41.0 30 36.24739003034914 38.0 35.0 40.0 31.0 41.0 31 36.085043030450734 38.0 35.0 40.0 30.0 41.0 32 35.87940628137994 38.0 35.0 40.0 30.0 41.0 33 35.73711875806023 38.0 35.0 40.0 30.0 41.0 34 35.59999538747975 38.0 35.0 40.0 29.0 41.0 35 35.452410945635215 37.0 35.0 40.0 29.0 41.0 36 35.32922798253974 37.0 35.0 40.0 27.0 41.0 37 35.18291136045038 37.0 34.0 40.0 27.0 41.0 38 35.10527641150911 37.0 34.0 40.0 27.0 41.0 39 35.0516066218338 37.0 34.0 40.0 26.0 41.0 40 34.89771861008559 37.0 34.0 40.0 25.0 41.0 41 34.87644990522517 37.0 34.0 40.0 25.0 41.0 42 34.79821283539723 37.0 34.0 40.0 25.0 41.0 43 34.714199518926605 37.0 34.0 40.0 25.0 41.0 44 34.545530249718105 36.0 34.0 40.0 24.0 41.0 45 34.386953673467225 36.0 34.0 40.0 24.0 41.0 46 34.33104244827588 36.0 34.0 40.0 23.0 41.0 47 34.26067284204175 36.0 33.0 40.0 23.0 41.0 48 34.175232137547845 36.0 33.0 40.0 23.0 41.0 49 34.04887276861542 36.0 33.0 40.0 23.0 41.0 50 33.931496594526436 35.0 33.0 40.0 23.0 41.0 51 33.57403749480312 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 4.0 14 10.0 15 30.0 16 90.0 17 241.0 18 529.0 19 1196.0 20 2206.0 21 3669.0 22 5614.0 23 8738.0 24 13004.0 25 18996.0 26 24953.0 27 27783.0 28 30040.0 29 33998.0 30 39815.0 31 48368.0 32 59765.0 33 77541.0 34 136765.0 35 224169.0 36 120008.0 37 139785.0 38 210318.0 39 376626.0 40 65.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.44325696287981 24.602622030768003 30.48246338500395 14.471657621348239 2 30.996759392867673 25.688621224200276 30.321523827095316 12.993095555836739 3 28.085012488086917 24.88423509143075 33.919351953371155 13.111400467111173 4 25.291258837806957 27.305995216691837 33.12525049413181 14.277495451369388 5 22.64385920842919 31.35211044617407 31.939396470424708 14.06463387497203 6 19.928393739688058 40.408793956850495 28.765421556301728 10.897390747159715 7 86.69499834510253 3.6532407006293592 7.699667586885234 1.9520933673828746 8 87.34648566472339 2.6582452851005 7.2106781090412255 2.784590941134892 9 83.46430189817674 4.533733417522217 9.185023770062125 2.8169409142389124 10 44.70192834512123 28.58621891145769 14.672302252218842 12.03955049120224 11 36.34478962856122 24.37286865723926 24.980412371776612 14.301929342422905 12 34.47771622902784 22.91624722859214 26.57752867398146 16.028507868398563 13 20.908491961436837 36.048092380054214 27.706349508112115 15.337066150396833 14 15.329025405636873 39.32379206509388 28.124468235629973 17.22271429363927 15 13.548717251885368 27.89876640015857 42.77040432479872 15.782112023157344 16 15.75150732798572 24.299816309497615 41.657477986123794 18.291198376392874 17 16.306381047777606 24.991320358854075 28.530868668458904 30.171429924909415 18 19.613059416117267 28.008220259061577 32.42626668220795 19.952453642613204 19 23.580574807287032 29.49264147191754 27.053802555460884 19.87298116533454 20 26.206844107411886 27.535062945318572 25.884777997530435 20.373314949739115 21 20.53132493397551 30.832017622320606 29.020107471721822 19.616549971982057 22 21.501512470322485 26.657437470743222 27.134396997124654 24.706653061809643 23 17.780891575231763 31.67835275682232 26.825171146317246 23.715584521628667 24 18.609773930409535 27.88860638933785 35.518026539444215 17.983593140808402 25 16.898528917697057 29.482606123806278 32.181678446253855 21.43718651224281 26 16.353191895178607 35.029785037856946 27.498661434157206 21.118361632807236 27 17.40553215705756 33.91417845092871 29.057069965075744 19.62321942693799 28 15.335258541109711 30.58749171772124 36.02584008641619 18.05140965475286 29 15.815334635227563 27.02936866440736 34.82589917654047 22.3293975238246 30 18.681081000218782 30.778287994544762 31.092625016439897 19.448005988796563 31 24.919265312788088 29.088671961923023 26.054880264584135 19.937182460704754 32 24.65784761105733 28.997044870472326 26.71066844768124 19.634439070789096 33 23.287056457871174 29.25067115286204 27.172107466735312 20.290164922531474 34 18.389370260090043 28.122847620407036 29.93631605487403 23.55146606462889 35 18.581226169943946 27.145554309621033 30.6164134663152 23.656806054119823 36 25.594563209915172 27.124423980368118 28.30666278550098 18.97435002421573 37 19.0177949784614 30.687533542060265 31.43445016577024 18.8602213137081 38 19.057936370906468 31.743925341996558 26.905890250690472 22.292248036406498 39 20.17397927731781 31.23785707295698 27.945016265367016 20.643147384358194 40 21.86477960567938 27.91247929819881 27.121245081276967 23.101496014844834 41 16.93742368304755 26.384924787870816 29.253164407051173 27.424487122030456 42 20.832697034087147 28.100595326769014 26.273476325616503 24.793231313527336 43 20.83300869086079 28.885160088734917 27.65766872006926 22.624162500335032 44 19.99677123582507 31.55057347962918 27.2834935976349 21.16916168691085 45 18.796394006466254 33.53676209804847 24.487994669422545 23.178849226062734 46 22.302221053163034 31.40652571885193 26.5130157218376 19.77823750614743 47 20.18463793897636 28.219897539719096 28.899994951160267 22.695469570144276 48 21.225509231585292 26.026083178699633 30.690276121668308 22.058131468046767 49 20.856756937012296 25.312326835705147 30.246539207357092 23.584377019925466 50 19.21476205940303 29.341051617218167 29.8162658656672 21.627920457711607 51 18.397411004850003 30.400248328117236 26.535143352766173 24.667197314266588 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 962.0 1 1460.5 2 1959.0 3 10965.5 4 19972.0 5 14138.5 6 8305.0 7 8303.0 8 8301.0 9 9840.5 10 11380.0 11 12675.5 12 13971.0 13 13986.0 14 14001.0 15 13340.0 16 12679.0 17 11842.0 18 11005.0 19 10119.5 20 9234.0 21 9207.0 22 9180.0 23 9726.5 24 10273.0 25 10814.5 26 13404.5 27 15453.0 28 17250.0 29 19047.0 30 21899.0 31 24751.0 32 28796.0 33 32841.0 34 38192.0 35 43543.0 36 46091.0 37 48639.0 38 56060.5 39 63482.0 40 80050.0 41 96618.0 42 117277.0 43 137936.0 44 143951.0 45 149966.0 46 156547.0 47 163128.0 48 165328.5 49 167529.0 50 153894.0 51 140259.0 52 122624.5 53 104990.0 54 86992.5 55 68995.0 56 61527.5 57 54060.0 58 47990.0 59 41920.0 60 36985.0 61 32050.0 62 26906.0 63 21762.0 64 18096.0 65 14430.0 66 11547.0 67 8664.0 68 6853.5 69 5043.0 70 3928.0 71 2813.0 72 2259.5 73 1706.0 74 1172.0 75 661.5 76 685.0 77 531.0 78 377.0 79 255.0 80 133.0 81 132.5 82 132.0 83 109.0 84 86.0 85 61.5 86 37.0 87 26.5 88 16.0 89 15.5 90 15.0 91 10.0 92 5.0 93 3.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1604329.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.782175046589213 #Duplication Level Percentage of deduplicated Percentage of total 1 76.1634531580812 18.874960283162665 2 9.661759159484182 4.788788134966474 3 3.6209828559108788 2.692074929276458 4 1.7955623127618763 1.7799175816769357 5 1.0835515212560416 1.3426381735882627 6 0.6955987027041686 1.0343069287557045 7 0.5106079225298799 0.8857782441417524 8 0.3967877809797756 0.7866611395670801 9 0.33518464132943593 0.7475944008918872 >10 3.606963424246727 21.364505016453755 >50 1.7428027833157704 31.064070321719083 >100 0.38088981117650844 12.337691556297658 >500 0.004073687807671072 0.7042862327910724 >1k 0.001527632927876652 0.6256676477652995 >5k 0.0 0.0 >10k+ 2.54605487979442E-4 0.9710594089459419 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15390 0.9592795492695076 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3022 0.18836535398911322 No Hit CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT 1816 0.11319374018670735 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.233135472836307E-5 0.0 0.0 0.14386076671306197 0.0 2 6.233135472836307E-5 0.0 0.0 0.452026984490089 0.0 3 6.233135472836307E-5 0.0 0.0 0.6895094460051523 0.0 4 6.233135472836307E-5 0.0 0.0 1.0938529441280436 0.0 5 6.233135472836307E-5 0.0 0.0 1.8908839770396222 0.0 6 6.233135472836307E-5 0.0 0.0 2.8886843035312584 0.0 7 6.233135472836307E-5 0.0 0.0 3.4957916985855144 0.0 8 6.233135472836307E-5 0.0 0.0 4.774955760320982 0.0 9 6.233135472836307E-5 0.0 0.0 5.343355384088924 0.0 10 6.233135472836307E-5 0.0 0.0 6.259189979112763 0.0 11 6.233135472836307E-5 0.0 0.0 7.363389928125715 0.0 12 6.233135472836307E-5 0.0 0.0 8.1457107613214 0.0 13 6.233135472836307E-5 0.0 0.0 8.483172715820757 0.0 14 6.233135472836307E-5 0.0 0.0 8.61213628875374 0.0 15 6.233135472836307E-5 0.0 0.0 8.793645193722734 0.0 16 6.233135472836307E-5 0.0 0.0 9.20010795790639 0.0 17 6.233135472836307E-5 0.0 0.0 9.670647354750802 0.0 18 6.233135472836307E-5 0.0 0.0 10.282055613281315 0.0 19 6.233135472836307E-5 0.0 0.0 10.588538884480677 0.0 20 6.233135472836307E-5 0.0 0.0 10.917399112027521 0.0 21 6.233135472836307E-5 0.0 0.0 11.32903537865363 0.0 22 6.233135472836307E-5 0.0 0.0 11.742728579985776 0.0 23 6.233135472836307E-5 0.0 0.0 12.200303055046689 0.0 24 6.233135472836307E-5 0.0 0.0 12.54368648824524 0.0 25 6.233135472836307E-5 0.0 0.0 12.813830579637967 0.0 26 6.233135472836307E-5 0.0 0.0 13.061348389264296 1.2466270945672613E-4 27 6.233135472836307E-5 0.0 0.0 13.307432577731873 1.2466270945672613E-4 28 6.233135472836307E-5 0.0 0.0 13.562243155861422 1.8699406418508922E-4 29 6.233135472836307E-5 0.0 0.0 13.84298357755797 1.8699406418508922E-4 30 6.233135472836307E-5 0.0 0.0 14.227256379458328 1.8699406418508922E-4 31 6.233135472836307E-5 0.0 0.0 14.54820052495467 1.8699406418508922E-4 32 6.233135472836307E-5 0.0 0.0 14.81971590615142 1.8699406418508922E-4 33 6.233135472836307E-5 0.0 0.0 15.103572895584385 1.8699406418508922E-4 34 6.233135472836307E-5 0.0 0.0 15.391855411203064 1.8699406418508922E-4 35 6.233135472836307E-5 0.0 0.0 15.743965234063587 1.8699406418508922E-4 36 6.233135472836307E-5 0.0 0.0 16.024954981179047 1.8699406418508922E-4 37 6.233135472836307E-5 0.0 0.0 16.310183260416036 1.8699406418508922E-4 38 6.233135472836307E-5 0.0 0.0 16.59042503127476 1.8699406418508922E-4 39 6.233135472836307E-5 0.0 0.0 16.884192706109534 1.8699406418508922E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCTCGC 20 7.034122E-4 45.000004 23 CGAATTA 30 2.1660417E-6 45.000004 23 GTCCGAG 30 2.1660417E-6 45.000004 1 TCGAATA 20 7.034122E-4 45.000004 25 GACCGTA 25 3.8914986E-5 45.0 9 TAACGCG 25 3.8914986E-5 45.0 1 GTATCGT 35 1.2123382E-7 45.0 25 CACGTTA 25 3.8914986E-5 45.0 36 TATACGA 25 3.8914986E-5 45.0 30 TATCGTG 25 3.8914986E-5 45.0 1 CGTTTTT 6045 0.0 43.920597 1 CGACGGT 260 0.0 43.26923 28 CCGCTCG 125 0.0 43.199997 19 CGGTCTA 260 0.0 42.403843 31 TCGATTG 75 0.0 42.0 1 ACGCCGA 130 0.0 41.53846 12 ACGTAAG 60 3.6379788E-12 41.250004 1 TAGGGCG 465 0.0 41.12903 5 CGATACT 55 6.184564E-11 40.909092 12 TCGCGTG 50 1.0822987E-9 40.5 1 >>END_MODULE