##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547860_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1619853 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50061270991874 31.0 31.0 33.0 30.0 34.0 2 31.90750333517918 31.0 31.0 34.0 30.0 34.0 3 31.900373675882935 33.0 31.0 34.0 30.0 34.0 4 35.70492445919476 37.0 35.0 37.0 33.0 37.0 5 35.6588671935046 37.0 35.0 37.0 33.0 37.0 6 35.713835144300134 37.0 35.0 37.0 33.0 37.0 7 36.05165653920449 37.0 35.0 37.0 35.0 37.0 8 36.08581395966177 37.0 35.0 37.0 35.0 37.0 9 37.85150010525646 39.0 38.0 39.0 35.0 39.0 10 37.37432285522205 39.0 37.0 39.0 35.0 39.0 11 37.05004589922666 39.0 37.0 39.0 33.0 39.0 12 36.62567529275805 39.0 35.0 39.0 33.0 39.0 13 36.501727008561886 39.0 35.0 39.0 32.0 39.0 14 37.59947044577502 40.0 36.0 41.0 33.0 41.0 15 37.76315505172383 40.0 36.0 41.0 33.0 41.0 16 37.834988730458875 40.0 36.0 41.0 33.0 41.0 17 37.748200608326805 40.0 35.0 41.0 33.0 41.0 18 37.63638922791142 39.0 36.0 41.0 33.0 41.0 19 37.54323324400424 39.0 36.0 41.0 33.0 41.0 20 37.38504666781492 39.0 35.0 41.0 32.0 41.0 21 37.27164748900054 39.0 35.0 41.0 32.0 41.0 22 37.18708240809506 39.0 35.0 41.0 32.0 41.0 23 37.08618312896294 39.0 35.0 41.0 32.0 41.0 24 37.118363826841076 39.0 35.0 41.0 32.0 41.0 25 37.089447622716385 39.0 35.0 41.0 32.0 41.0 26 36.991059065236165 39.0 35.0 41.0 32.0 41.0 27 36.914290370792905 39.0 35.0 41.0 32.0 41.0 28 36.86553779880026 39.0 35.0 41.0 31.0 41.0 29 36.868661539040886 39.0 35.0 41.0 31.0 41.0 30 36.781741923495524 39.0 35.0 41.0 31.0 41.0 31 36.63056524264856 38.0 35.0 41.0 31.0 41.0 32 36.476946364886196 39.0 35.0 41.0 30.0 41.0 33 36.3336123709991 38.0 35.0 41.0 30.0 41.0 34 36.18027253090249 38.0 35.0 41.0 30.0 41.0 35 36.054725336187914 38.0 35.0 41.0 30.0 41.0 36 35.94357265751892 38.0 35.0 41.0 29.0 41.0 37 35.83359230745012 38.0 35.0 41.0 29.0 41.0 38 35.71964307872381 38.0 35.0 41.0 28.0 41.0 39 35.62326396284107 38.0 35.0 40.0 27.0 41.0 40 35.49468069016139 38.0 35.0 40.0 27.0 41.0 41 35.43599203137568 38.0 35.0 40.0 27.0 41.0 42 35.35725278775296 38.0 35.0 40.0 26.0 41.0 43 35.296615186686694 38.0 34.0 40.0 26.0 41.0 44 35.12154930107855 38.0 34.0 40.0 26.0 41.0 45 34.983519492200834 38.0 34.0 40.0 25.0 41.0 46 34.953083397073684 38.0 34.0 40.0 25.0 41.0 47 34.86685767165292 38.0 34.0 40.0 24.0 41.0 48 34.76157713076434 37.0 34.0 40.0 24.0 41.0 49 34.629254012555464 37.0 34.0 40.0 24.0 41.0 50 34.54669096516783 37.0 34.0 40.0 24.0 41.0 51 34.207792929358405 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 6.0 14 11.0 15 27.0 16 98.0 17 200.0 18 553.0 19 1049.0 20 1891.0 21 3067.0 22 4913.0 23 7393.0 24 11402.0 25 17253.0 26 23259.0 27 26658.0 28 28569.0 29 31089.0 30 35860.0 31 42689.0 32 53026.0 33 68654.0 34 116069.0 35 171852.0 36 113899.0 37 150793.0 38 244440.0 39 465066.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.723002025492438 24.257694988372403 30.102052470193286 13.917250515941879 2 31.42538242667699 25.425270070802718 30.211938984586872 12.937408517933418 3 28.135762936513377 25.221424413202925 33.38068330891753 13.26212934136616 4 24.721564240705792 28.1118718797323 32.805816330247254 14.36074754931466 5 23.08987296995468 31.81461527681833 31.248329323710237 13.847182429516753 6 21.29446313955649 40.153828773351655 27.83536530783966 10.71634277925219 7 88.62551108032642 2.9634787848033124 6.887168156616681 1.5238419782535821 8 89.38335762566109 2.243413445541046 6.579671118305179 1.7935578104926804 9 84.87362742174753 5.0463838385334965 7.884172205749534 2.1958165339694404 10 42.50064666361701 36.32385160875709 12.088257391257109 9.087244336368794 11 29.565275367579652 24.411227438539175 29.627009364429984 16.396487829451193 12 29.06010607135339 23.036966934653947 30.189899947711307 17.71302704628136 13 22.53093336247178 29.835978943768353 30.225211793909697 17.407875899850172 14 17.190387028946454 32.95144682881718 31.015160017606537 18.843006124629827 15 16.252215478811966 27.364211443877934 39.33758186699657 17.04599121031353 16 20.93696156379622 25.180186103306905 36.27125424344061 17.611598089456265 17 19.90322578653742 24.873244670967058 29.58694400047412 25.636585542021407 18 22.020640144506938 25.8688905721692 32.987561216974626 19.122908066349233 19 24.61322107623346 26.653714874127466 28.978925865495203 19.75413818414387 20 25.784623666468498 27.024736195197956 28.62988184730343 18.560758291030112 21 23.345513450911902 27.095730291575844 31.416122327149438 18.142633930362816 22 23.077217500600362 23.68776672945014 30.595492307017985 22.639523462931514 23 19.192852684780657 28.061558672299274 30.755753762841444 21.989834880078625 24 19.652338823337672 26.487835624590627 34.888783117974285 18.971042434097416 25 19.533747815388185 27.808017147234963 32.0048177211142 20.653417316262647 26 18.476985257304214 31.40494847371953 29.158756998320218 20.95930927065604 27 18.515075133360867 30.027848205979186 31.961295253334715 19.495781407325232 28 17.083031608423727 28.083659443171694 35.406114011580065 19.427194936824517 29 18.044044737392838 26.241023105183004 34.781859835429515 20.93307232199465 30 19.6111622474385 27.042268650303452 32.822052371418884 20.524516730839157 31 23.27025970875135 26.683347192615624 29.776961242779436 20.269431855853586 32 24.04718205911277 26.7619345706061 29.830608086042375 19.360275284238753 33 22.368449482761708 27.377422519203904 29.87252546990375 20.38160252813064 34 19.195013374670417 27.08412430016798 31.669478650223198 22.051383674938403 35 19.814575767060344 27.13326456166084 31.06621403300176 21.985945638277055 36 23.429286484637803 26.645874656527475 30.23255813953488 19.692280719299838 37 20.162693775299363 29.33945240710114 30.410660720448092 20.08719309715141 38 20.509762305591927 30.1335985425838 28.217313546352663 21.13932560547161 39 19.980455016597183 29.001829178326677 29.270372064625615 21.74734374045052 40 22.02662834220142 26.662789771664464 29.229380690717 22.081201195417115 41 19.21464478566882 26.093602320704413 29.51656724406474 25.175185649562025 42 21.45509499936105 27.51854643600376 28.24490864294476 22.781449921690424 43 21.321193960192684 27.35198811250157 29.018929495454216 22.307888431851534 44 20.332030128659824 29.01541065763375 29.51348054422222 21.139078669484206 45 19.345644326985227 29.90258992636986 28.026123358107185 22.725642388537725 46 21.80481809151818 28.23972298720933 28.673898187057716 21.28156073421477 47 20.343265716086584 27.551080252343883 30.05266527271302 22.052988758856515 48 21.136609309610193 26.5290122004898 30.750938511087117 21.583439978812894 49 21.1288925600039 25.36396821193034 31.105538588995422 22.401600639070335 50 19.944834500414544 28.202929525086535 30.101805534205884 21.75043044029304 51 19.125809564201194 28.787735677249728 28.91521638074566 23.17123837780342 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 716.0 1 1248.5 2 1781.0 3 11169.0 4 20557.0 5 14815.5 6 9074.0 7 8357.0 8 7640.0 9 8188.5 10 8737.0 11 8927.5 12 9118.0 13 9063.5 14 9009.0 15 8679.0 16 8349.0 17 7944.0 18 7539.0 19 7772.0 20 8005.0 21 8136.5 22 8268.0 23 9515.5 24 10763.0 25 11819.5 26 15910.5 27 18945.0 28 23371.5 29 27798.0 30 30914.5 31 34031.0 32 39676.0 33 45321.0 34 48529.0 35 51737.0 36 56973.0 37 62209.0 38 69501.0 39 76793.0 40 91027.0 41 105261.0 42 115595.5 43 125930.0 44 130363.5 45 134797.0 46 136329.0 47 137861.0 48 138276.0 49 138691.0 50 131316.0 51 123941.0 52 112132.0 53 100323.0 54 91717.5 55 83112.0 56 73583.0 57 64054.0 58 57711.5 59 51369.0 60 45243.0 61 39117.0 62 33938.0 63 28759.0 64 24508.0 65 20257.0 66 15905.0 67 11553.0 68 9049.0 69 6545.0 70 5304.5 71 4064.0 72 3091.0 73 2118.0 74 1773.5 75 1108.0 76 787.0 77 568.5 78 350.0 79 256.5 80 163.0 81 109.5 82 56.0 83 40.5 84 25.0 85 17.0 86 9.0 87 9.5 88 10.0 89 6.0 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 2.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1619853.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.041319935139207 #Duplication Level Percentage of deduplicated Percentage of total 1 75.9998648762103 18.271370665163207 2 7.90441604549823 3.8006519010054167 3 2.7527548930989387 1.9853958326403454 4 1.4800534311548557 1.4232975223797766 5 0.9066827800837599 1.0898925397837567 6 0.7085487028024866 1.022066763222147 7 0.5481795439387765 0.922527185841158 8 0.46968440120686816 0.903346636636688 9 0.4096546592625364 0.886377485362597 >10 7.450883307274259 46.99511078253346 >50 1.3135733426516991 19.45428471091418 >100 0.053361324538262464 2.028071570399841 >500 0.0015617948527338827 0.2215934767425565 >1k 5.205982842446274E-4 0.17184289385344823 >5k 0.0 0.0 >10k+ 2.602991421223137E-4 0.8241700335214541 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13170 0.8130367385188656 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8520199055099444E-4 0.0 0.0 0.06266000680308645 0.0 2 1.8520199055099444E-4 0.0 0.0 0.20909304733207273 0.0 3 1.8520199055099444E-4 0.0 0.0 0.3191647637162138 0.0 4 1.8520199055099444E-4 0.0 0.0 0.4953535907270598 0.0 5 1.8520199055099444E-4 0.0 0.0 0.8837838989093455 0.0 6 1.8520199055099444E-4 0.0 0.0 1.3527153389844635 0.0 7 1.8520199055099444E-4 0.0 0.0 1.6098991698629443 0.0 8 1.8520199055099444E-4 0.0 0.0 2.1801360987694562 0.0 9 1.8520199055099444E-4 0.0 0.0 2.431516933944006 0.0 10 1.8520199055099444E-4 0.0 0.0 2.875199169307338 0.0 11 1.8520199055099444E-4 0.0 0.0 3.429138323045363 0.0 12 1.8520199055099444E-4 0.0 0.0 3.8408423480402236 0.0 13 1.8520199055099444E-4 0.0 0.0 4.019870938906185 0.0 14 1.8520199055099444E-4 0.0 0.0 4.097594040940752 0.0 15 1.8520199055099444E-4 0.0 0.0 4.211554999126464 0.0 16 1.8520199055099444E-4 0.0 0.0 4.441143733412846 0.0 17 1.8520199055099444E-4 0.0 0.0 4.748455569733797 0.0 18 2.469359874013259E-4 0.0 0.0 5.128057916366485 0.0 19 2.469359874013259E-4 0.0 0.0 5.342460087427686 0.0 20 2.469359874013259E-4 0.0 0.0 5.568715185884151 0.0 21 2.469359874013259E-4 0.0 0.0 5.841209047981514 0.0 22 2.469359874013259E-4 0.0 0.0 6.14759487434971 0.0 23 2.469359874013259E-4 0.0 0.0 6.48478596514622 0.0 24 2.469359874013259E-4 0.0 0.0 6.733018366481403 0.0 25 2.469359874013259E-4 0.0 0.0 6.946556261586699 0.0 26 3.086699842516574E-4 0.0 0.0 7.144907593466814 0.0 27 3.086699842516574E-4 0.0 0.0 7.353445034827234 0.0 28 3.086699842516574E-4 0.0 0.0 7.571304309712054 0.0 29 3.086699842516574E-4 0.0 0.0 7.815524001251966 0.0 30 3.086699842516574E-4 0.0 0.0 8.115119087966624 0.0 31 3.086699842516574E-4 0.0 0.0 8.372241184848255 0.0 32 3.086699842516574E-4 0.0 0.0 8.61534966444486 0.0 33 3.086699842516574E-4 0.0 0.0 8.855865316173752 0.0 34 3.086699842516574E-4 0.0 0.0 9.098418189798704 0.0 35 3.086699842516574E-4 0.0 0.0 9.38461699919684 0.0 36 3.086699842516574E-4 0.0 0.0 9.636800376330445 0.0 37 3.086699842516574E-4 0.0 0.0 9.896083163101837 0.0 38 3.086699842516574E-4 0.0 0.0 10.16474951739448 0.0 39 3.086699842516574E-4 0.0 0.0 10.506261987970513 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCG 20 7.0341444E-4 45.0 1 ACGGCGT 20 7.0341444E-4 45.0 31 CGTTTTT 5920 0.0 42.111485 1 TAATACG 75 0.0 42.0 1 TACGGGA 725 0.0 41.27586 4 CTCCGAT 45 1.9292202E-8 40.0 30 CGTAAGG 250 0.0 39.6 2 AGGGCGA 1155 0.0 39.545456 6 GCGAACG 40 3.4593904E-7 39.375 1 ACGTGCG 40 3.4593904E-7 39.375 1 TTGCGAG 150 0.0 39.0 1 CTAGCGG 215 0.0 38.720932 2 GGGCGAT 2250 0.0 38.7 7 CGTTAGG 170 0.0 38.38235 2 GACCGAT 685 0.0 38.10219 9 TAGGGCG 480 0.0 37.968754 5 TGTAGCG 190 0.0 37.894737 1 TAGGGAT 2710 0.0 37.776752 5 TCACGAC 155 0.0 37.741936 25 ATAGGGA 2205 0.0 37.65306 4 >>END_MODULE