SRR1547858_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547858_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1407175
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8885	0.6314068967967738	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3000	0.21319309965000802	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGG	30	2.1658507E-6	45.000004	2
CTATACG	30	2.1658507E-6	45.000004	1
CTGAGCG	60	0.0	45.000004	1
GCTAACG	75	0.0	45.000004	1
CTTAACG	25	3.891254E-5	45.0	1
AACCGTC	35	1.2121927E-7	45.0	38
TCGCACC	20	7.033828E-4	45.0	25
TTAATCG	40	6.8175723E-9	45.0	20
GATCGCA	40	6.8175723E-9	45.0	9
CGGCATG	20	7.033828E-4	45.0	44
ACTCTCG	20	7.033828E-4	45.0	37
ATTACCG	20	7.033828E-4	45.0	1
ATAGCCG	40	6.8175723E-9	45.0	1
CCGTGAG	20	7.033828E-4	45.0	1
GCACGAC	85	0.0	45.0	23
TTCGTAG	55	1.8189894E-12	45.0	1
CACGACG	290	0.0	45.0	26
TACGGCA	25	3.891254E-5	45.0	28
TTATCCG	20	7.033828E-4	45.0	28
AATATCG	20	7.033828E-4	45.0	18