SRR1547857_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547857_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2170225
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10125	0.4665414876337707	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3048	0.1404462670921218	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTAA	30	2.1663964E-6	45.000004	33
CGTATAT	20	7.0346746E-4	45.0	18
CCGTAAA	25	3.8919552E-5	45.0	19
CGTAGAC	20	7.0346746E-4	45.0	43
CGCACCT	20	7.0346746E-4	45.0	35
TAAATCG	55	1.8189894E-12	45.0	1
GTAACGT	35	1.2125929E-7	45.0	32
GTACGAC	20	7.0346746E-4	45.0	36
TACGGGA	885	0.0	41.440678	4
TAACGCC	230	0.0	41.08696	12
TAATGCG	50	1.0822987E-9	40.5	1
AGTACGG	340	0.0	40.367645	2
CGTTTTT	5740	0.0	40.178574	1
TACGCGG	185	0.0	40.135136	2
CGTAAGG	345	0.0	39.782608	2
TGTTACG	170	0.0	39.705883	1
GCACGGT	40	3.460118E-7	39.375	3
CGGTCTA	440	0.0	39.375	31
CCAATCG	190	0.0	39.078945	24
TATGGGA	2130	0.0	38.978874	4