SRR1547854_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547854_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1408292
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43437	3.0843745473239927	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4327	0.307251621112667	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1549	0.10999139383025679	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	55	1.8189894E-12	45.000004	4
TCGATAG	55	1.8189894E-12	45.000004	1
CGACGGT	145	0.0	45.0	28
TTTCGCG	20	7.0338283E-4	45.0	1
GCGTAAG	30	2.1658525E-6	44.999996	1
CGTTTTT	15630	0.0	43.87716	1
CGGTCTA	150	0.0	43.5	31
CTCACGA	155	0.0	42.09677	24
CTAACGG	55	6.184564E-11	40.909092	2
CGGTTTT	1605	0.0	40.79439	1
TCACGAC	160	0.0	40.78125	25
CACGACG	160	0.0	40.78125	26
CGGGATC	425	0.0	40.764706	6
TACGCGG	105	0.0	40.714287	2
GCGCGAC	305	0.0	40.573772	9
TAGGGCG	390	0.0	40.384617	5
AGGGCGC	185	0.0	40.135136	6
AATTCGC	45	1.9288564E-8	40.0	13
ACGGGAT	745	0.0	39.865772	5
CGAGGGA	745	0.0	39.865772	4