SRR1547851_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547851_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1488207
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7272	0.4886417010536841	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3121	0.20971544953087845	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2259	0.15179339970850828	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	35	1.2122473E-7	45.000004	42
TTTACGA	20	7.033957E-4	45.000004	14
CGCGAGA	20	7.033957E-4	45.000004	20
CGCTAAC	20	7.033957E-4	45.000004	31
CCATACG	35	1.2122473E-7	45.000004	1
TATTACG	20	7.033957E-4	45.000004	1
TCCGTCG	20	7.033957E-4	45.000004	14
GTAACGT	20	7.033957E-4	45.000004	24
CGCCCGA	20	7.033957E-4	45.000004	41
TGCCGAT	20	7.033957E-4	45.000004	38
ACGCAAC	25	3.8913626E-5	45.0	44
TTACGTA	25	3.8913626E-5	45.0	43
TCGAACA	25	3.8913626E-5	45.0	37
AACACGA	25	3.8913626E-5	45.0	41
CGAGTAC	30	2.1659362E-6	44.999996	9
ACGATTC	30	2.1659362E-6	44.999996	10
ACTACGG	60	0.0	44.999996	2
TTTACGG	165	0.0	43.636364	2
CGTAAGG	180	0.0	42.5	2
CGTTTTT	3370	0.0	42.062313	1