SRR1547849_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547849_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1378269
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5417	0.39302922724083617	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5077	0.3683606030462849	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAACGGT	30	2.165818E-6	45.000004	11
ACGTCGA	30	2.165818E-6	45.000004	16
AATCGGT	30	2.165818E-6	45.000004	26
TAATCCG	30	2.165818E-6	45.000004	42
GTTTGCG	70	0.0	45.0	1
CGGGTAC	70	0.0	45.0	6
AGGTACG	50	2.1827873E-11	45.0	1
GTACCCG	25	3.8912112E-5	45.0	9
GTACCCC	20	7.0337765E-4	45.0	44
CGAACGG	75	0.0	45.0	2
CAACGAA	25	3.8912112E-5	45.0	19
TCCGATC	25	3.8912112E-5	45.0	18
CGTGATA	20	7.0337765E-4	45.0	33
TTAGACT	25	3.8912112E-5	45.0	40
CGTTGCA	20	7.0337765E-4	45.0	39
CGTCTTA	25	3.8912112E-5	45.0	37
GTTAGCG	70	0.0	45.0	1
CGTCTCA	25	3.8912112E-5	45.0	35
GTAGGTT	20	7.0337765E-4	45.0	24
CGACAGT	20	7.0337765E-4	45.0	14