##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547846_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1176871 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.0833345370903 33.0 31.0 34.0 31.0 34.0 2 32.523900240553125 34.0 31.0 34.0 31.0 34.0 3 32.6122412736825 34.0 31.0 34.0 31.0 34.0 4 36.18086094397772 37.0 35.0 37.0 35.0 37.0 5 36.1653843114496 37.0 35.0 37.0 35.0 37.0 6 36.21567954346738 37.0 37.0 37.0 35.0 37.0 7 36.3578497558356 37.0 37.0 37.0 35.0 37.0 8 36.35236997088041 37.0 37.0 37.0 35.0 37.0 9 38.16582106280128 39.0 39.0 39.0 37.0 39.0 10-11 37.82978635721332 39.0 38.0 39.0 35.0 39.0 12-13 37.37187423260494 39.0 37.0 39.0 35.0 39.0 14-15 38.578427457214936 40.0 38.0 41.0 34.0 41.0 16-17 38.72756104959677 40.0 38.0 41.0 35.0 41.0 18-19 38.49351585687811 40.0 37.5 41.0 35.0 41.0 20-21 38.21070448672794 40.0 35.0 41.0 34.0 41.0 22-23 38.04984658471489 40.0 35.0 41.0 34.0 41.0 24-25 37.98161820624351 40.0 35.0 41.0 34.0 41.0 26-27 37.96954763946091 40.0 35.0 41.0 34.0 41.0 28-29 37.87512310185228 40.0 35.0 41.0 34.0 41.0 30-31 37.63854874493467 40.0 35.0 41.0 33.5 41.0 32-33 37.150432800196455 40.0 35.0 41.0 32.5 41.0 34-35 36.65803473787696 40.0 35.0 41.0 30.5 41.0 36-37 36.41094308552084 40.0 35.0 41.0 30.0 41.0 38-39 36.28633512084162 40.0 35.0 41.0 30.0 41.0 40-41 36.13544050282486 40.0 35.0 41.0 29.0 41.0 42-43 36.07669532174724 40.0 35.0 41.0 29.0 41.0 44-45 35.94826280875304 39.0 35.0 41.0 28.0 41.0 46-47 35.8404642479932 39.0 35.0 41.0 28.0 41.0 48-49 35.73090806044163 39.0 35.0 41.0 27.0 41.0 50-51 35.52213114266559 38.5 35.0 40.5 26.5 41.0 52-53 35.33325062814871 38.0 35.0 40.0 26.0 41.0 54-55 35.129292845180146 38.0 35.0 40.0 26.0 41.0 56-57 34.842295799624594 37.0 34.5 40.0 25.0 41.0 58-59 34.59601519622797 37.0 34.0 40.0 25.0 41.0 60-61 34.24854593239191 36.0 34.0 40.0 24.0 41.0 62-63 33.905845245570674 36.0 34.0 39.0 23.0 41.0 64-65 33.56088050432035 35.0 34.0 39.0 22.0 40.0 66-67 33.230210023018664 35.0 33.0 38.5 21.5 40.0 68-69 32.73844457039047 35.0 33.0 37.5 19.5 40.0 70-71 32.45295278751877 35.0 33.0 37.0 19.0 39.0 72-73 32.16836679636086 35.0 33.0 36.5 19.0 39.0 74-75 31.865700233925384 35.0 32.5 36.0 18.0 38.5 76-77 29.97024270289607 33.0 29.5 34.5 14.0 36.0 78-79 31.051669214382883 34.0 31.5 35.0 17.0 37.0 80-81 31.115664758499445 35.0 32.0 35.0 15.5 36.5 82-83 30.93200571685427 34.5 32.0 35.0 15.0 36.0 84-85 30.721578660702832 34.0 31.5 35.0 13.0 36.0 86 30.30629440270004 34.0 31.0 35.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 12.0 11 12.0 12 17.0 13 52.0 14 154.0 15 495.0 16 1308.0 17 3564.0 18 8809.0 19 14197.0 20 16667.0 21 16394.0 22 13473.0 23 10514.0 24 8572.0 25 8481.0 26 8840.0 27 10694.0 28 12795.0 29 15916.0 30 19914.0 31 25245.0 32 31777.0 33 42014.0 34 96223.0 35 96171.0 36 101970.0 37 192689.0 38 291385.0 39 128216.0 40 297.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.463746663822967 23.499092084009206 28.72931697696689 17.307844275200935 2 34.166106565630386 24.53225544685866 28.71317247174924 12.58846551576171 3 28.13536912711759 23.69197643582007 35.362669315498465 12.809985121563875 4 25.63908873614865 26.04949905299731 34.51431805185105 13.797094159002985 5 23.37070078198885 30.390161708462525 32.70834271555676 13.530794793991866 6 21.369376932561003 38.95873039610969 29.623807537104746 10.048085134224568 7 84.24806117237999 3.5617327642536862 10.51151740505119 1.6786886583151424 8 85.39109214178954 2.9382149785320566 10.19313076794313 1.4775621117352709 9 80.64979084368635 5.406879768470801 11.565668624683589 2.377660763159259 10-11 33.59607807482723 28.10477953828415 25.28034083599647 13.018801550892153 12-13 27.38949298606219 22.97176156095273 31.67751605740986 17.961229395575216 14-15 17.99415568911121 28.955637448794302 35.35277018466765 17.697436677426836 16-17 23.75196601836565 27.017277169715285 32.40448613314458 16.82627067877448 18-19 23.74682526802003 28.321923133461524 31.126563574087555 16.804688024430884 20-21 25.49281102176874 27.26093174188165 32.04004517062617 15.206212065723431 22-23 22.34798886199082 23.590181081868785 34.88334745269447 19.178482603445918 24-25 20.900931368008898 27.972734479819795 33.53842519698421 17.5879089551871 26-27 19.603720373770788 30.810853526002425 31.51951233397713 18.065913766249658 28-29 18.220178762158298 28.833321579000586 34.35818369218037 18.588315966660748 30-31 21.60160289445487 27.61585594342965 32.671975093277005 18.11056606883847 32-33 23.60305420050286 27.968698353515382 30.480188567820942 17.94805887816082 34-35 20.36119506725886 29.173503298152475 30.709313085291424 19.755988549297246 36-37 22.234977325467277 30.240060295478433 29.147544633184097 18.377417745870193 38-39 20.97579088957073 29.547970848121842 28.979216923520077 20.497021338787345 40-41 21.120666581129115 28.226458124977167 29.503573458773307 21.149301835120415 42-43 20.92183425371175 28.235337602846872 29.40708879732783 21.43573934611355 44-45 20.70800453065799 29.089891755341068 29.432155265955235 20.769948448045707 46-47 20.526633760199715 29.26093853956806 29.493249472542022 20.719178227690204 48-49 20.589469873928408 28.611292146717865 30.512817462576614 20.286420516777113 50-51 19.291281712269228 29.69093469037813 30.29176519771496 20.726018399637685 52-53 21.285722904209553 27.831470059165365 29.762607796436484 21.120199240188605 54-55 21.072190579936116 27.66679610594534 30.833625775467322 20.42738753865122 56-57 21.27008822547246 28.20236882377083 29.47243155791926 21.055111392837446 58-59 22.018216100150315 28.668052828219913 29.016816626461186 20.296914445168586 60-61 22.44001254173142 29.47111450617782 27.890397503209783 20.198475448880973 62-63 21.977939808186285 28.13541161265763 29.40368995412411 20.482958625031973 64-65 21.260061638021497 30.322652185328725 28.933927337830568 19.48335883881921 66-67 20.764467813379717 30.184234295857404 27.376195012027654 21.675102878735224 68-69 19.468913755203417 31.31417971893266 27.872213692069902 21.344692833794017 70-71 20.325932069020308 30.401632804275064 28.40761646773521 20.86481865896942 72-73 21.580020240111278 30.70064603512195 27.575069824985064 20.14426389978171 74-75 20.37406818589293 30.99570811074451 26.936979499027508 21.693244204335056 76-77 21.525596263311783 29.90331990507031 27.64232443487859 20.92875939673932 78-79 19.968586191689656 30.220304519356837 28.140467391923156 21.670641897030347 80-81 19.025789572518992 29.625889328567023 28.57165313785453 22.776667961059456 82-83 20.09850697315169 29.53488530178754 28.8498909396187 21.516716785442075 84-85 19.395413770923067 29.006875010090315 28.349581220031762 23.248129998954855 86 19.07388320385157 29.775990741551112 28.85753833682706 22.292587717770257 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 466.0 1 538.5 2 5181.0 3 6148.5 4 2692.0 5 3176.0 6 3791.5 7 4069.0 8 4205.5 9 4403.0 10 4472.0 11 4494.0 12 4611.5 13 4764.0 14 4813.0 15 4786.5 16 4774.5 17 4885.5 18 5010.5 19 5216.0 20 5533.5 21 5674.0 22 5795.0 23 6120.5 24 6948.5 25 8057.0 26 8979.0 27 10626.0 28 12923.5 29 14011.0 30 16474.5 31 19863.5 32 21485.0 33 22820.5 34 25482.5 35 28192.0 36 28879.0 37 30593.0 38 34491.5 39 37791.0 40 41061.5 41 45887.5 42 49388.5 43 50219.0 44 51634.5 45 54287.5 46 55640.5 47 56778.0 48 57726.0 49 54531.5 50 51411.0 51 48301.0 52 43858.0 53 40608.5 54 36867.0 55 32553.0 56 28429.5 57 26795.0 58 24027.5 59 19058.5 60 15338.0 61 12526.0 62 9996.5 63 7328.5 64 5897.0 65 4862.5 66 3314.5 67 2442.5 68 1695.0 69 1091.5 70 776.0 71 675.0 72 545.0 73 282.5 74 148.5 75 136.0 76 85.5 77 35.5 78 23.0 79 21.0 80 16.5 81 9.5 82 7.0 83 5.0 84 2.5 85 2.0 86 2.0 87 1.0 88 1.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1176871.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.23379013181775 #Duplication Level Percentage of deduplicated Percentage of total 1 75.38200798114372 18.267917611300476 2 6.6191183362033525 3.208126492344374 3 2.8007036506123995 2.036149934710701 4 1.7226833585071333 1.6698858789454727 5 1.1549997824438427 1.399501116501962 6 0.9336732968230947 1.3575865636135953 7 0.7928846510945112 1.3450220163354747 8 0.7066069756825203 1.3699012123494914 9 0.5905697315665444 1.2880568639688819 >10 8.073314121535988 45.9500558701312 >50 1.1647074425430688 18.12247798973579 >100 0.05660787647597572 2.1206674958879166 >500 0.0017689961398734684 0.2518153325552272 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 3.5379922797469367E-4 1.6128356216194684 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18811 1.598390987627361 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0203080881422008 0.0 2 0.0 0.0 0.0 0.06228380170808865 0.0 3 0.0 0.0 0.0 0.11462598704530913 0.0 4 0.0 0.0 0.0 0.17104678422698835 0.0 5 0.0 0.0 0.0 0.31949126114926785 0.0 6 0.0 0.0 0.0 0.5201929523286749 0.0 7 0.0 0.0 0.0 0.6549570853559991 0.0 8 0.0 0.0 0.0 0.8505605117298327 0.0 9 0.0 0.0 0.0 0.9838801363955778 0.0 10 0.0 0.0 0.0 1.1560315446637737 0.0 11 0.0 0.0 0.0 1.378230919106682 0.0 12 0.0 0.0 0.0 1.527015280349333 0.0 13 0.0 0.0 0.0 1.5981360743870823 0.0 14 0.0 0.0 0.0 1.641726238474735 0.0 15 0.0 0.0 0.0 1.688290390365639 0.0 16 0.0 0.0 0.0 1.7679082924126774 0.0 17 0.0 0.0 0.0 1.858912319192163 0.0 18 0.0 0.0 0.0 1.971923855715707 0.0 19 0.0 0.0 0.0 2.0499273072409805 0.0 20 0.0 0.0 0.0 2.1320943416908054 0.0 21 0.0 0.0 0.0 2.2346544353629243 0.0 22 0.0 0.0 0.0 2.3552283980147357 0.0 23 0.0 0.0 0.0 2.4703642115406024 0.0 24 0.0 0.0 0.0 2.564002341802967 0.0 25 0.0 0.0 0.0 2.6459144630125135 0.0 26 0.0 0.0 0.0 2.7351340971100484 0.0 27 0.0 0.0 0.0 2.8444918771895984 0.0 28 0.0 0.0 0.0 2.9443328962987447 0.0 29 0.0 0.0 0.0 3.070769863476966 0.0 30 8.497108009289038E-5 0.0 0.0 3.200945558179274 0.0 31 8.497108009289038E-5 0.0 0.0 3.3195651859889486 0.0 32 8.497108009289038E-5 0.0 0.0 3.427138573386548 0.0 33 8.497108009289038E-5 0.0 0.0 3.5361564691457263 0.0 34 8.497108009289038E-5 0.0 0.0 3.6632732049646903 0.0 35 8.497108009289038E-5 0.0 0.0 3.796847742870714 0.0 36 8.497108009289038E-5 0.0 0.0 3.9274482929734864 0.0 37 8.497108009289038E-5 0.0 0.0 4.079206642019389 0.0 38 8.497108009289038E-5 0.0 0.0 4.2510181659672135 0.0 39 8.497108009289038E-5 0.0 0.0 4.599739478668435 0.0 40 8.497108009289038E-5 0.0 0.0 4.796702442323755 0.0 41 8.497108009289038E-5 0.0 0.0 5.016267713283784 0.0 42 8.497108009289038E-5 0.0 0.0 5.215779809341891 0.0 43 8.497108009289038E-5 0.0 0.0 5.372891336433645 0.0 44 8.497108009289038E-5 0.0 0.0 5.51385835830775 0.0 45 8.497108009289038E-5 0.0 0.0 5.664257170072166 0.0 46 8.497108009289038E-5 0.0 0.0 5.83224499541581 0.0 47 8.497108009289038E-5 0.0 0.0 6.013998135734503 0.0 48 8.497108009289038E-5 0.0 0.0 6.175953014391552 0.0 49 8.497108009289038E-5 0.0 0.0 6.335188818485628 0.0 50 8.497108009289038E-5 0.0 0.0 6.506235602712617 0.0 51 8.497108009289038E-5 0.0 0.0 6.685864466028987 0.0 52 8.497108009289038E-5 0.0 0.0 6.899736674622792 0.0 53 8.497108009289038E-5 0.0 0.0 7.080215248740092 0.0 54 8.497108009289038E-5 0.0 0.0 7.262478215539341 0.0 55 8.497108009289038E-5 0.0 0.0 7.446270661780263 0.0 56 8.497108009289038E-5 0.0 0.0 7.628533628579513 0.0 57 8.497108009289038E-5 0.0 0.0 7.812580988060714 0.0 58 8.497108009289038E-5 0.0 0.0 7.996033549981264 0.0 59 8.497108009289038E-5 0.0 0.0 8.18789824883101 0.0 60 8.497108009289038E-5 0.0 0.0 8.393528262655805 0.0 61 8.497108009289038E-5 0.0 0.0 8.614707984137599 0.0 62 8.497108009289038E-5 0.0 0.0 8.905733933455748 0.0 63 8.497108009289038E-5 0.0 0.0 9.13065238246163 0.0 64 8.497108009289038E-5 0.0 0.0 9.35353152554528 0.0 65 8.497108009289038E-5 0.0 0.0 9.561370787452491 0.0 66 8.497108009289038E-5 0.0 0.0 9.774393285245367 0.0 67 8.497108009289038E-5 0.0 0.0 9.969147000818271 0.0 68 8.497108009289038E-5 0.0 0.0 10.222615732735363 0.0 69 8.497108009289038E-5 0.0 0.0 10.604900622073277 0.0 70 8.497108009289038E-5 0.0 0.0 10.850212130301452 0.0 71 8.497108009289038E-5 0.0 0.0 11.087876241321267 0.0 72 8.497108009289038E-5 0.0 0.0 11.306251917159994 0.0 73 8.497108009289038E-5 0.0 0.0 11.533209672088105 0.0 74 1.6994216018578076E-4 0.0 0.0 11.788037941286683 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 9055 0.0 76.99613 1 TAGGGCG 220 0.0 67.27273 5 TACGGGA 490 0.0 64.48979 4 TTAGCGG 405 0.0 64.197525 2 TAGGGAC 1230 0.0 62.764233 5 TAGCGGG 875 0.0 62.62857 3 CCGATCC 680 0.0 61.764706 80 AGGGATC 1400 0.0 61.428566 6 AGCGGGA 890 0.0 60.22472 4 TTGCGGG 795 0.0 59.87421 3 AGGGATT 2110 0.0 59.715637 6 CGAGGGA 735 0.0 58.775513 4 ATAGGGA 1560 0.0 58.717953 4 TATAGCG 75 0.0 58.66666 1 GTAGGGA 2020 0.0 58.613857 4 CGGGACT 480 0.0 58.333332 6 CGAACGG 55 7.003109E-10 58.181816 2 ATAGCGG 200 0.0 58.0 2 TAGGGAT 1920 0.0 57.916664 5 GCTACGG 215 0.0 57.674416 2 >>END_MODULE