##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547845_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2767085 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.067884795732695 33.0 31.0 34.0 31.0 34.0 2 32.50149091914415 34.0 31.0 34.0 31.0 34.0 3 32.62299676374235 34.0 31.0 34.0 31.0 34.0 4 36.144172658230595 37.0 35.0 37.0 35.0 37.0 5 36.102203943861504 37.0 35.0 37.0 35.0 37.0 6 36.163787885084844 37.0 36.0 37.0 35.0 37.0 7 36.373867083952966 37.0 37.0 37.0 35.0 37.0 8 36.37443446804128 37.0 37.0 37.0 35.0 37.0 9 38.18243928177125 39.0 39.0 39.0 37.0 39.0 10-11 37.76628582063796 39.0 37.5 39.0 35.0 39.0 12-13 37.18325801339677 39.0 37.0 39.0 34.5 39.0 14-15 38.33757672785621 40.0 37.0 41.0 33.5 41.0 16-17 38.494440358716844 40.0 37.0 41.0 34.0 41.0 18-19 38.39615154576025 40.0 37.0 41.0 34.0 41.0 20-21 38.25361978399651 40.0 36.0 41.0 34.0 41.0 22-23 38.08774450369252 40.0 35.5 41.0 34.0 41.0 24-25 38.07478339118603 40.0 35.0 41.0 34.0 41.0 26-27 38.074322075397035 40.0 35.0 41.0 34.0 41.0 28-29 37.99364439473309 40.0 36.0 41.0 34.0 41.0 30-31 37.84954491820815 40.0 35.5 41.0 34.0 41.0 32-33 37.62073879190556 40.0 35.0 41.0 33.0 41.0 34-35 37.371626639586424 40.0 35.0 41.0 33.0 41.0 36-37 37.22688207987828 40.0 35.0 41.0 33.0 41.0 38-39 37.13208629297618 40.0 35.0 41.0 32.0 41.0 40-41 37.041506314406675 40.0 35.0 41.0 32.0 41.0 42-43 36.99842017863564 40.0 35.0 41.0 32.0 41.0 44-45 36.867761922745416 39.5 35.0 41.0 32.0 41.0 46-47 36.74332429253167 39.0 35.0 41.0 31.0 41.0 48-49 36.64491296797894 39.0 35.0 41.0 31.0 41.0 50-51 36.430859008667966 39.0 35.0 40.5 31.0 41.0 52-53 36.243982566491454 38.0 35.0 40.0 31.0 41.0 54-55 36.05610434807749 38.0 35.0 40.0 31.0 41.0 56-57 35.77083230186279 37.5 35.0 40.0 30.0 41.0 58-59 35.51126564597763 37.0 35.0 40.0 29.0 41.0 60-61 35.15936120502261 36.5 34.5 40.0 28.5 41.0 62-63 34.75831696532633 36.0 34.0 39.0 28.0 41.0 64-65 34.367936836056714 35.5 34.0 39.0 27.5 40.0 66-67 34.02812092870295 35.0 34.0 38.5 26.5 40.0 68-69 33.518712110397765 35.0 33.5 37.5 25.5 40.0 70-71 33.172692743446625 35.0 33.0 37.0 25.0 39.0 72-73 32.87027106142385 35.0 33.0 36.5 25.0 39.0 74-75 32.545235328874966 35.0 33.0 36.0 24.0 38.5 76-77 30.618337889873278 33.0 30.0 34.5 20.0 36.0 78-79 31.62846479237176 34.5 32.0 35.0 21.0 37.0 80-81 31.678157700251347 35.0 32.0 35.0 20.0 36.5 82-83 31.44966291241505 35.0 32.0 35.0 19.5 36.0 84-85 31.205576445971122 34.0 32.0 35.0 19.0 36.0 86 30.76674406460228 34.0 31.0 35.0 18.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 7.0 10 3.0 11 18.0 12 27.0 13 62.0 14 228.0 15 748.0 16 1863.0 17 4221.0 18 9054.0 19 14228.0 20 17904.0 21 18972.0 22 17203.0 23 15709.0 24 15789.0 25 17636.0 26 21308.0 27 26176.0 28 32889.0 29 42008.0 30 53669.0 31 69494.0 32 85084.0 33 112839.0 34 260585.0 35 244456.0 36 244382.0 37 460239.0 38 675449.0 39 304121.0 40 710.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.43210273627301 24.618108948586688 30.858827972396945 13.090960342743358 2 29.81075753003612 25.593684328453953 31.34985011302508 13.245708028484849 3 28.90265387582962 25.23756950003343 32.60232338363296 13.257453240503997 4 27.44360943014038 26.58378763211105 31.201643606900404 14.770959330848166 5 24.30279517976499 31.236698547388315 29.962830921348637 14.497675351498057 6 22.180092046323114 41.360312386500595 25.697764976500544 10.761830590675746 7 89.35804285014736 3.2275119846336486 5.736686802176298 1.6777583630426967 8 90.33408803849538 2.677149418973396 5.296223281901351 1.6925392606298686 9 85.83054008098775 5.574819710995506 6.367205922477987 2.227434285538753 10-11 36.34329989862978 30.86903727207513 19.851594728748843 12.936068100546242 12-13 29.619346713237938 23.195095199460805 28.855618819082174 18.329939268219082 14-15 18.242572960353584 30.34127972216249 33.10507266672328 18.311074650760638 16-17 24.281888702370907 27.192858188310083 29.703334013953313 18.8219190953657 18-19 24.61070043023615 28.923235101198554 28.3635847832647 18.102479685300597 20-21 26.761592072523975 27.986400851437526 28.50761722173334 16.74438985430516 22-23 23.020543279299336 23.87693186150769 32.38286861444444 20.719656244748535 24-25 21.576948304804514 27.67005711786953 31.590410124734152 19.16258445259181 26-27 20.072820314518708 31.743513480792963 28.470936021119698 19.71273018356863 28-29 18.47429695871287 28.542672162221255 33.07632400161181 19.906706877454074 30-31 23.129683403292635 27.37402356631618 29.578563723196073 19.917729307195117 32-33 24.841358324735236 27.462582464940542 28.159290372359358 19.536768837964864 34-35 20.44012019869285 27.422919787429734 30.151784278401276 21.985175735476144 36-37 22.793571574418568 29.020503526274037 28.786358207283115 19.39956669202428 38-39 20.792205515912958 28.871809142111644 28.569469315181863 21.76651602679354 40-41 21.14120093889418 26.62180597993918 29.249661647546066 22.98733143362058 42-43 21.25849043307307 26.859059262725935 28.488337004464988 23.394113299736002 44-45 21.124468529156136 28.277935083309693 28.45125827359839 22.146338113935784 46-47 21.647708689830633 27.39460479168511 28.75141168413692 22.206274834347337 48-49 20.535021511807553 26.753352354553616 30.79303671553277 21.91858941810606 50-51 19.595910497870502 28.257661040408948 29.448752026049075 22.697676435671475 52-53 21.25933970224984 25.84671233446027 30.21750325703764 22.676444706252248 54-55 21.240095624095392 25.73484370736714 31.05556930849612 21.969491360041342 56-57 21.955270618719698 26.298595814729218 29.511941266712082 22.234192299839002 58-59 22.38586816089856 27.2614863656158 28.388665328314815 21.96398014517082 60-61 23.14327171012094 28.094438732456716 27.728457925940113 21.03383163148223 62-63 22.418321085185312 26.618698016143345 29.558108984725806 21.40487191394554 64-65 21.685383716076664 28.494625210284468 29.263611345513418 20.556379728125446 66-67 20.252214875943455 28.683470149995394 27.678007722928644 23.38630725113251 68-69 19.511471458231316 30.017906930939958 27.724554901638363 22.74606670919036 70-71 20.13004660138738 28.727758634086054 29.239958295462554 21.902236469064015 72-73 21.526208988881802 29.34593624698916 28.00157927927765 21.126275484851387 74-75 20.089263611345515 30.72854646676918 26.775216518466184 22.406973403419123 76-77 21.70047179613203 28.41766696722363 27.618866063023003 22.262995173621338 78-79 19.91212774453983 28.40474723400257 28.762813574573965 22.920311446883634 80-81 18.524819439952154 28.464286424161166 28.731553241046083 24.279340894840598 82-83 19.814353371869675 28.240386543962327 29.208065527441335 22.737194556726664 84-85 18.67331505898807 27.92951788615095 28.562964274678947 24.834202780182032 86 19.33279967908467 28.064407128801612 28.6243104205328 23.97848277158092 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 784.0 1 1077.0 2 4379.0 3 4995.5 4 2777.0 5 3295.5 6 3851.5 7 4063.0 8 4166.0 9 4326.0 10 4411.5 11 4534.5 12 4558.5 13 4592.5 14 4697.0 15 4614.5 16 4754.5 17 4927.0 18 5222.0 19 5502.5 20 6215.5 21 6993.0 22 7574.0 23 8998.0 24 10317.0 25 13541.5 26 17242.5 27 21292.0 28 29682.5 29 34976.0 30 37947.5 31 43771.5 32 46993.0 33 50050.5 34 56579.0 35 64713.5 36 69008.0 37 72412.5 38 78838.5 39 89895.0 40 102808.5 41 114947.0 42 126650.5 43 131094.0 44 131908.0 45 135634.0 46 142506.0 47 147694.0 48 153853.0 49 148706.5 50 138629.0 51 127976.5 52 108973.5 53 97728.0 54 91599.0 55 85760.0 56 77684.0 57 72213.0 58 65125.5 59 48930.5 60 34567.5 61 26669.5 62 21165.0 63 15473.5 64 12644.0 65 10423.5 66 6924.5 67 4947.0 68 3372.0 69 2239.5 70 1469.0 71 955.0 72 836.5 73 597.0 74 465.0 75 377.0 76 216.5 77 159.5 78 120.5 79 55.0 80 42.5 81 26.0 82 19.5 83 14.5 84 10.5 85 7.5 86 6.0 87 5.0 88 4.0 89 3.0 90 1.0 91 1.5 92 1.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2767085.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.697053294412555 #Duplication Level Percentage of deduplicated Percentage of total 1 77.42213374361486 13.701436270278888 2 9.39643198338394 3.325783151745364 3 2.979423856578591 1.5818106832954653 4 1.4958716719821419 1.058900828026799 5 0.8849213624951089 0.7830250256720057 6 0.5955955948110998 0.6324172189973628 7 0.43674960327359685 0.5410426703812469 8 0.3189395294683298 0.45154318805567173 9 0.27331870686576104 0.4353242149586966 >10 3.213766586187456 13.834581416068053 >50 1.4185086996309866 18.227153142376853 >100 1.5571221276450138 43.8397850611333 >500 0.004948480500396008 0.5882751417055081 >1k 0.0020618668751650033 0.5529538207049541 >5k 0.0 0.0 >10k+ 2.0618668751650032E-4 0.44596816659997024 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12222 0.4416922501477186 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2772 0.1001776237448434 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4455645562026464E-4 0.0 0.0 0.0523294369345358 0.0 2 1.4455645562026464E-4 0.0 0.0 0.15984330080210762 0.0 3 1.4455645562026464E-4 0.0 0.0 0.24610736569350056 0.0 4 1.4455645562026464E-4 0.0 0.0 0.40002385181517736 0.0 5 1.4455645562026464E-4 0.0 0.0 0.7418998693571033 0.0 6 1.4455645562026464E-4 0.0 0.0 1.0306152503446768 0.0 7 1.4455645562026464E-4 0.0 0.0 1.2135153058182166 0.0 8 1.4455645562026464E-4 0.0 0.0 1.548561030832085 0.0 9 1.4455645562026464E-4 0.0 0.0 1.6638809433031512 0.0 10 1.4455645562026464E-4 0.0 0.0 1.923251363799811 0.0 11 1.4455645562026464E-4 0.0 0.0 2.3688466382492765 0.0 12 1.4455645562026464E-4 0.0 0.0 2.751885106529073 0.0 13 1.4455645562026464E-4 0.0 0.0 2.89210486848073 0.0 14 1.4455645562026464E-4 0.0 0.0 2.9482289123752974 0.0 15 1.4455645562026464E-4 0.0 0.0 3.0367697414427095 0.0 16 1.4455645562026464E-4 0.0 0.0 3.2132008955272426 0.0 17 1.4455645562026464E-4 0.0 0.0 3.44109414781259 0.0 18 1.4455645562026464E-4 0.0 0.0 3.710041433494092 0.0 19 1.4455645562026464E-4 0.0 0.0 3.8944593317516447 0.0 20 1.4455645562026464E-4 0.0 0.0 4.097235899872971 0.0 21 1.4455645562026464E-4 0.0 0.0 4.343379404680377 0.0 22 1.4455645562026464E-4 0.0 0.0 4.610375178211005 0.0 23 1.4455645562026464E-4 0.0 0.0 4.86970945959376 0.0 24 1.4455645562026464E-4 0.0 0.0 5.056367982913427 0.0 25 1.4455645562026464E-4 0.0 0.0 5.2250653666222755 0.0 26 1.4455645562026464E-4 0.0 0.0 5.382234372995408 0.0 27 1.4455645562026464E-4 0.0 0.0 5.570519156440803 0.0 28 1.4455645562026464E-4 0.0 0.0 5.758406409633242 0.0 29 1.4455645562026464E-4 0.0 0.0 5.987058583310596 0.0 30 1.4455645562026464E-4 0.0 0.0 6.220264285339987 0.0 31 1.4455645562026464E-4 0.0 0.0 6.43706282965648 0.0 32 1.4455645562026464E-4 0.0 0.0 6.6305516455042035 0.0 33 1.4455645562026464E-4 0.0 0.0 6.826389503755758 0.0 34 1.4455645562026464E-4 0.0 0.0 7.040802866554515 0.0 35 1.4455645562026464E-4 0.0 0.0 7.276429889215546 0.0 36 1.4455645562026464E-4 0.0 0.0 7.492686346823462 0.0 37 1.4455645562026464E-4 0.0 0.0 7.735252079354266 0.0 38 1.8069556952533082E-4 0.0 0.0 8.003874113010623 0.0 39 1.8069556952533082E-4 0.0 0.0 8.441374225945355 0.0 40 1.8069556952533082E-4 0.0 0.0 8.71220074554992 0.0 41 1.8069556952533082E-4 0.0 0.0 8.997627467172132 0.0 42 1.8069556952533082E-4 0.0 0.0 9.279837807656794 0.0 43 1.8069556952533082E-4 0.0 0.0 9.51792229006337 0.0 44 1.8069556952533082E-4 0.0 0.0 9.742635300325071 0.0 45 1.8069556952533082E-4 0.0 0.0 9.974684550709501 0.0 46 1.8069556952533082E-4 0.0 0.0 10.246306130819978 0.0 47 2.5297379733546315E-4 0.0 0.0 10.53664777193328 0.0 48 2.5297379733546315E-4 0.0 0.0 10.777948635477406 0.0 49 2.5297379733546315E-4 0.0 0.0 11.026007513321781 0.0 50 2.5297379733546315E-4 0.0 0.0 11.283354143439757 0.0 51 2.5297379733546315E-4 0.0 0.0 11.55537325380319 0.0 52 2.5297379733546315E-4 0.0 0.0 11.875999472368937 0.0 53 2.5297379733546315E-4 0.0 0.0 12.128575739451444 0.0 54 2.5297379733546315E-4 0.0 0.0 12.392029879819377 0.0 55 2.5297379733546315E-4 0.0 0.0 12.654941933478733 0.0 56 2.5297379733546315E-4 0.0 0.0 12.92656351358921 0.0 57 2.5297379733546315E-4 0.0 0.0 13.19493257344823 0.0 58 2.891129112405293E-4 0.0 0.0 13.442196390786695 0.0 59 2.891129112405293E-4 0.0 0.0 13.716709100009577 0.0 60 2.891129112405293E-4 0.0 0.0 14.005532898338865 0.0 61 2.891129112405293E-4 0.0 0.0 14.304909317928434 0.0 62 3.2525202514559545E-4 0.0 0.0 14.665107866220229 0.0 63 3.2525202514559545E-4 0.0 0.0 14.989203439720862 0.0 64 3.6139113905066163E-4 0.0 0.0 15.283411966022005 0.0 65 4.3366936686079394E-4 0.0 0.0 15.572669433718154 0.0 66 4.698084807658601E-4 0.0 0.0 15.854879774202816 0.0 67 5.059475946709263E-4 0.0 0.0 16.13882479215492 0.0 68 5.059475946709263E-4 0.0 0.0 16.469353127930656 0.0 69 5.059475946709263E-4 0.0 0.0 16.915671184658223 0.0 70 5.059475946709263E-4 0.0 0.0 17.209771293617653 0.0 71 5.059475946709263E-4 0.0 0.0 17.501992168654017 0.0 72 5.059475946709263E-4 0.0 0.0 17.778709363825108 0.0 73 5.059475946709263E-4 0.0 0.0 18.07118321265881 0.0 74 5.059475946709263E-4 0.0 0.0 18.386099451227555 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 7185 0.0 72.03897 1 TGCGTAG 295 0.0 70.50848 1 ATACGCG 70 0.0 68.57143 1 TAGGGAC 3485 0.0 66.80057 5 TACGGGA 1105 0.0 65.882355 4 ACGGGAT 1350 0.0 65.77778 5 GGGCGAT 2130 0.0 64.788734 7 ATAGGGA 4540 0.0 64.66961 4 CCGATCC 2435 0.0 63.901436 80 TAGCGGG 1925 0.0 62.96104 3 ATTGCGG 610 0.0 62.95082 2 TTACGGG 1090 0.0 62.38532 3 ATTCGCG 135 0.0 62.22222 1 CGGGATA 780 0.0 62.051285 6 CGGGATC 995 0.0 61.90955 6 TAGGGAG 4565 0.0 61.86199 5 GGCGATT 780 0.0 61.538464 8 GTACGGG 1040 0.0 61.53846 3 TATGGGA 4030 0.0 61.43921 4 TCTAGCG 170 0.0 61.17647 1 >>END_MODULE