##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547841_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2020089 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.99451311303611 33.0 31.0 34.0 31.0 34.0 2 32.41844938515085 33.0 31.0 34.0 31.0 34.0 3 32.54050291843577 34.0 31.0 34.0 31.0 34.0 4 36.07471106471051 37.0 35.0 37.0 35.0 37.0 5 36.04519454340873 37.0 35.0 37.0 35.0 37.0 6 36.09169199970892 37.0 35.0 37.0 35.0 37.0 7 36.316564270188096 37.0 36.0 37.0 35.0 37.0 8 36.319369097104136 37.0 37.0 37.0 35.0 37.0 9 38.09530916707135 39.0 39.0 39.0 37.0 39.0 10-11 37.66121170898906 39.0 37.5 39.0 35.0 39.0 12-13 37.088891628042134 39.0 36.0 39.0 33.5 39.0 14-15 38.282441021162924 40.0 37.0 41.0 33.5 41.0 16-17 38.40283571664417 40.0 37.0 41.0 34.0 41.0 18-19 38.276518757341876 40.0 36.0 41.0 34.0 41.0 20-21 38.11202748987792 40.0 35.5 41.0 34.0 41.0 22-23 37.917123948499295 40.0 35.0 41.0 34.0 41.0 24-25 37.909819319841844 40.0 35.0 41.0 34.0 41.0 26-27 37.910602701168116 40.0 35.0 41.0 34.0 41.0 28-29 37.82510226034596 40.0 35.0 41.0 34.0 41.0 30-31 37.68101628195589 40.0 35.5 41.0 33.5 41.0 32-33 37.39833839004123 40.0 35.0 41.0 33.0 41.0 34-35 37.09734818614427 40.0 35.0 41.0 32.0 41.0 36-37 36.92369172843375 40.0 35.0 41.0 31.5 41.0 38-39 36.83035202904426 40.0 35.0 41.0 31.0 41.0 40-41 36.72570540208872 40.0 35.0 41.0 31.0 41.0 42-43 36.695996810041535 39.5 35.0 41.0 31.0 41.0 44-45 36.55987384714238 39.0 35.0 41.0 31.0 41.0 46-47 36.43321828889717 39.0 35.0 41.0 31.0 41.0 48-49 36.32534729905464 39.0 35.0 41.0 30.5 41.0 50-51 36.079183639928736 38.5 35.0 40.0 30.0 41.0 52-53 35.865939074961545 38.0 35.0 40.0 29.5 41.0 54-55 35.685086647172476 38.0 35.0 40.0 29.0 41.0 56-57 35.36781027964609 37.0 35.0 40.0 28.5 41.0 58-59 35.11323684253516 37.0 34.5 40.0 28.0 41.0 60-61 34.76632613711574 36.0 34.0 39.5 27.5 41.0 62-63 34.3921223272836 36.0 34.0 39.0 26.5 41.0 64-65 34.06891008267458 35.0 34.0 39.0 26.0 40.0 66-67 33.76837332414562 35.0 34.0 38.0 26.0 40.0 68-69 33.334063994210155 35.0 33.5 37.5 25.5 40.0 70-71 33.038514392187665 35.0 33.0 37.0 25.0 39.0 72-73 32.796538419841895 35.0 33.0 36.5 25.0 39.0 74-75 32.48162828469438 35.0 33.0 36.0 24.0 38.5 76-77 30.516991578093837 33.0 30.0 34.5 20.0 36.0 78-79 31.575524890239983 34.0 31.5 35.0 21.5 37.0 80-81 31.712252776981607 35.0 32.0 35.0 21.0 36.5 82-83 31.52013797411896 34.5 32.0 35.0 20.0 36.0 84-85 31.312766912744934 34.0 32.0 35.0 19.5 36.0 86 30.892520577063685 34.0 31.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 7.0 10 12.0 11 21.0 12 36.0 13 70.0 14 227.0 15 765.0 16 2023.0 17 4589.0 18 9248.0 19 13883.0 20 16147.0 21 16143.0 22 14572.0 23 12996.0 24 13094.0 25 14630.0 26 17085.0 27 20768.0 28 25666.0 29 31571.0 30 39194.0 31 48298.0 32 59135.0 33 78640.0 34 190497.0 35 177432.0 36 175160.0 37 333287.0 38 491383.0 39 213158.0 40 348.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.019089752976235 22.96646335879261 30.25114240016158 13.763304488069586 2 30.859085911561323 25.582239198371955 30.773050098287747 12.785624791778977 3 29.58681523437829 24.63955796007008 33.000476711669634 12.773150093882002 4 26.829857496377635 26.934060826032912 31.823300854566313 14.412780823023144 5 24.60223287191802 31.852755002378608 29.432317090979655 14.112695034723718 6 22.303175751167398 40.74553150876026 26.447547608050932 10.503745132021411 7 88.24715148688993 3.732360306897369 6.390906539266339 1.6295816669463572 8 89.21136642989492 3.1995619994960616 6.03711024613272 1.551961324476298 9 84.42618122270851 6.041367484303909 7.251264672002075 2.281186620985511 10-11 36.63803921510389 29.27697740050067 21.23411394250451 12.850869441890927 12-13 28.376398267601083 25.074489292303458 28.83365534884849 17.715457091246968 14-15 18.10576167683701 30.67857406282595 33.81346069405853 17.402203566278516 16-17 23.13026802284454 26.872454629474245 31.158924186013586 18.83835316166763 18-19 24.19155789670653 28.79660252592831 29.01617205974588 17.995667517619275 20-21 26.389258097044237 27.809096529905364 29.06082355777394 16.740821815276455 22-23 22.61291457950615 24.14287192296973 32.096481887679204 21.147731609844914 24-25 20.609116727035293 27.876890572643088 32.62541897906478 18.888573721256837 26-27 19.340806271406855 32.6309385378565 28.938997242200713 19.08925794853593 28-29 18.247809873723387 28.496764251476048 34.015011219802695 19.240414654997874 30-31 22.829588201311925 27.903894333368477 30.32180760352638 18.944709861793218 32-33 24.92531269661881 27.88577631975621 28.180367300648633 19.008543682976345 34-35 20.97897666884974 27.847807695601528 30.263320081441957 20.909895554106775 36-37 22.48712804237833 29.935908764415824 29.164556611119608 18.412406582086234 38-39 20.98976827258601 30.38462661793614 27.960698761292203 20.66490634818565 40-41 21.16287945729124 27.041432332931866 29.493106491842685 22.30258171793421 42-43 21.216169188585255 27.434756587457287 28.407362249881068 22.94171197407639 44-45 20.321307625555114 30.04649795132789 28.367388763564378 21.264805659552625 46-47 21.31856566715625 28.988202995016554 28.8376403217878 20.855591016039394 48-49 21.243915490852135 27.383001442015676 30.70020677306792 20.67287629406427 50-51 20.08374383504885 29.560776777656827 29.433950682370924 20.921528704923396 52-53 21.789138993380984 27.02249752362396 30.08540712810178 21.102956354893273 54-55 21.539125256362468 27.50195659696182 30.37638440682564 20.582533739850074 56-57 22.15545948718101 26.777038041393226 29.171412744686005 21.896089726739763 58-59 22.524873904070564 28.29603052142752 28.304396489461602 20.874699085040312 60-61 23.25060925533479 28.958600338895963 27.243378880831486 20.54741152493776 62-63 22.988888113345503 27.091850903598804 29.490928369987657 20.428332613068036 64-65 21.23411394250451 29.53855003418166 29.408828026883967 19.81850799642986 66-67 19.79402887694552 29.568004181993963 27.0810097970931 23.55695714396742 68-69 19.44201468351147 31.124990037567652 27.029898187654105 22.403097091266773 70-71 20.279997564463745 29.373829568895232 28.8084831905921 21.537689676048927 72-73 22.3683461471252 29.707032709944958 27.499827977876222 20.42479316505362 74-75 20.941428818235234 30.863318398347793 26.662364876002986 21.53288790741398 76-77 23.460327738035307 28.127820110896106 27.37282862289731 21.03902352817128 78-79 20.093025604317432 29.22581628829225 29.048002340490935 21.633155766899378 80-81 18.914018144745107 29.15336898522788 28.931398567092835 23.001214302934176 82-83 19.995183380534222 28.64151034929649 29.508526604520892 21.854779665648394 84-85 19.063764022278225 27.983940311540728 28.865163861592237 24.087131804588807 86 19.771752630700927 28.254151178487678 29.250938943779207 22.723157247032187 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 649.0 1 894.0 2 3547.5 3 4001.0 4 2176.0 5 2527.0 6 2972.0 7 3196.0 8 3293.0 9 3470.0 10 3486.5 11 3475.0 12 3590.0 13 3726.0 14 3799.0 15 3842.5 16 3931.0 17 4293.5 18 4543.0 19 4871.5 20 5504.0 21 5740.0 22 6422.5 23 7729.0 24 9008.0 25 12488.5 26 15514.0 27 18078.0 28 21509.5 29 22577.0 30 25897.0 31 31373.0 32 35434.5 33 41162.0 34 48333.5 35 51897.0 36 52111.0 37 55157.0 38 62076.5 39 67734.0 40 75626.5 41 85329.0 42 92870.5 43 96818.0 44 100723.5 45 106694.5 46 107035.0 47 109132.5 48 113784.5 49 106784.0 50 98954.0 51 87758.0 52 74337.0 53 68382.5 54 60980.0 55 53364.5 56 46466.5 57 43511.0 58 39608.0 59 30761.0 60 22597.5 61 17570.0 62 13460.5 63 9854.5 64 8550.0 65 7452.5 66 5054.5 67 3068.0 68 2183.0 69 1738.5 70 1181.0 71 869.0 72 739.0 73 454.0 74 295.0 75 230.0 76 136.0 77 68.0 78 29.0 79 25.0 80 21.5 81 13.0 82 7.0 83 4.5 84 2.5 85 2.5 86 3.0 87 3.0 88 2.5 89 1.0 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2020089.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.968884174779273 #Duplication Level Percentage of deduplicated Percentage of total 1 80.07035074687766 15.188452091514733 2 7.457259942843761 2.8291180023404885 3 2.2993680052127217 1.3084933609822014 4 1.1714331778076974 0.8888312107331131 5 0.7360517271338642 0.6981039979324254 6 0.5263563735243237 0.5990635850423852 7 0.38931692133656454 0.5169435311680463 8 0.32872054291209907 0.4988369523496134 9 0.2745397332669248 0.4686941161543584 >10 3.814417124653409 17.815489011000892 >50 1.5791783475163121 21.62757946635843 >100 1.3480166483586755 36.3216367239322 >500 0.003940033070566245 0.4937194325242109 >1k 7.880066141132489E-4 0.2011449539913452 >5k 0.0 0.0 >10k+ 2.6266887137108295E-4 0.5438935639756066 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10916 0.5403722311244702 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.02301878778608269 0.0 2 0.0 0.0 0.0 0.08737238804824936 0.0 3 0.0 0.0 0.0 0.12742012851909 0.0 4 0.0 0.0 0.0 0.20731759838304153 0.0 5 0.0 0.0 0.0 0.3935470169878654 0.0 6 0.0 0.0 0.0 0.5526984207131468 0.0 7 0.0 0.0 0.0 0.6781384384549394 0.0 8 0.0 0.0 0.0 0.8828818928274942 0.0 9 0.0 0.0 0.0 0.9532253281909856 0.0 10 0.0 0.0 0.0 1.1146538593101591 0.0 11 0.0 0.0 0.0 1.3420695820827697 0.0 12 0.0 0.0 0.0 1.563099447598596 0.0 13 0.0 0.0 0.0 1.6277500644773573 0.0 14 0.0 0.0 0.0 1.6622039920023326 0.0 15 0.0 0.0 0.0 1.7094296340408763 0.0 16 0.0 0.0 0.0 1.8143260024682082 0.0 17 0.0 0.0 0.0 1.951844695951515 0.0 18 0.0 0.0 0.0 2.1147583101536616 0.0 19 0.0 0.0 0.0 2.2232188779801287 0.0 20 0.0 0.0 0.0 2.3340555787393527 0.0 21 0.0 0.0 0.0 2.485385544894309 0.0 22 0.0 0.0 0.0 2.656962143747132 0.0 23 4.95027694324359E-5 0.0 0.0 2.835172113703901 0.0 24 4.95027694324359E-5 0.0 0.0 2.9690771050186404 0.0 25 4.95027694324359E-5 0.0 0.0 3.083676016254729 0.0 26 4.95027694324359E-5 0.0 0.0 3.197037358255008 0.0 27 4.95027694324359E-5 0.0 0.0 3.323170414768854 0.0 28 4.95027694324359E-5 0.0 0.0 3.45761993654735 0.0 29 4.95027694324359E-5 0.0 0.0 3.61409819072328 0.0 30 4.95027694324359E-5 0.0 0.0 3.7756257273813185 0.0 31 4.95027694324359E-5 0.0 0.0 3.9358661920341134 0.0 32 4.95027694324359E-5 0.0 0.0 4.084077483714826 0.0 33 4.95027694324359E-5 0.0 0.0 4.2340213723256745 0.0 34 4.95027694324359E-5 0.0 0.0 4.389856090498983 0.0 35 4.95027694324359E-5 0.0 0.0 4.565838435831292 0.0 36 4.95027694324359E-5 0.0 0.0 4.725583872789763 0.0 37 4.95027694324359E-5 0.0 0.0 4.90131870427491 0.0 38 4.95027694324359E-5 0.0 0.0 5.089132211501572 0.0 39 4.95027694324359E-5 0.0 0.0 5.34778418178605 0.0 40 9.90055388648718E-5 0.0 0.0 5.547478353676496 0.0 41 9.90055388648718E-5 0.0 0.0 5.746875508950348 0.0 42 9.90055388648718E-5 0.0 0.0 5.938649237731605 0.0 43 9.90055388648718E-5 0.0 0.0 6.118492799079645 0.0 44 9.90055388648718E-5 0.0 0.0 6.301554040440792 0.0 45 9.90055388648718E-5 0.0 0.0 6.4831797014884 0.0 46 9.90055388648718E-5 0.0 0.0 6.679656193365738 0.0 47 9.90055388648718E-5 0.0 0.0 6.8848451726631845 0.0 48 9.90055388648718E-5 0.0 0.0 7.088153046722199 0.0 49 1.4850830829730768E-4 0.0 0.0 7.299876391584728 0.0 50 1.4850830829730768E-4 0.0 0.0 7.515262941385256 0.0 51 1.4850830829730768E-4 0.0 0.0 7.74173811153865 0.0 52 1.4850830829730768E-4 0.0 0.0 7.9807869851278825 0.0 53 1.4850830829730768E-4 0.0 0.0 8.200678286946763 0.0 54 1.4850830829730768E-4 0.0 0.0 8.42556936847832 0.0 55 1.4850830829730768E-4 0.0 0.0 8.648876361388037 0.0 56 1.4850830829730768E-4 0.0 0.0 8.881687886028784 0.0 57 1.4850830829730768E-4 0.0 0.0 9.115934990983071 0.0 58 1.4850830829730768E-4 0.0 0.0 9.335133254029897 0.0 59 1.4850830829730768E-4 0.0 0.0 9.571063453144886 0.0 60 1.4850830829730768E-4 0.0 0.0 9.805756083024065 0.0 61 1.4850830829730768E-4 0.0 0.0 10.054061974497163 0.0 62 1.4850830829730768E-4 0.0 0.0 10.333455605173832 0.0 63 1.980110777297436E-4 0.0 0.0 10.615027357705527 0.0 64 1.980110777297436E-4 0.0 0.0 10.879421649244167 0.0 65 1.980110777297436E-4 0.0 0.0 11.124509860704157 0.0 66 1.980110777297436E-4 0.0 0.0 11.367370447539688 0.0 67 2.475138471621795E-4 0.0 0.0 11.62815103690976 0.0 68 2.9701661659461536E-4 0.0 0.0 11.900762788174184 0.0 69 2.9701661659461536E-4 0.0 0.0 12.249064273900803 0.0 70 3.465193860270513E-4 0.0 0.0 12.517517792532903 0.0 71 3.465193860270513E-4 0.0 0.0 12.785129764084651 0.0 72 3.960221554594872E-4 0.0 0.0 13.04808847530975 0.0 73 4.4552492489192307E-4 0.0 0.0 13.312136247462364 0.0 74 4.4552492489192307E-4 0.0 0.0 13.597222696623763 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 7140 0.0 71.596634 1 TACGGGA 890 0.0 68.31461 4 GGGCGAT 1640 0.0 64.39024 7 TAGCGGG 1355 0.0 64.35424 3 TCGATAG 145 0.0 63.44828 1 ACGGGAT 1310 0.0 62.290073 5 TAGGGAC 2385 0.0 62.05451 5 CCGATCC 1445 0.0 62.006916 80 CTAGCGG 175 0.0 61.714287 2 CGAGGGA 1695 0.0 61.35693 4 CGGGATT 1180 0.0 61.01695 6 TAATGCG 105 0.0 60.952385 1 CGTTAGG 375 0.0 60.8 2 GTAGGGT 1340 0.0 59.999996 4 CGAAGGG 1185 0.0 59.746838 3 TATGGGA 2710 0.0 59.630997 4 TAAGGGA 2950 0.0 59.525425 4 CGAGGGT 370 0.0 59.45946 4 GCGAGGG 2100 0.0 59.42857 3 TAGGGTA 1430 0.0 59.020977 5 >>END_MODULE