SRR1547840_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547840_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1911647
Sequences flagged as poor quality	0
Sequence length	86
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28763	1.5046187920677825	No Hit
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTC	2502	0.13088190445202488	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	2302	0.12041972184195095	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	13050	75.586205	1
ACGGGTA	205	66.34146	5
TAACGGG	405	65.18519	3
CCGATCC	1930	64.455956	80
GGGCGAT	1325	64.0	7
TACGGGA	610	62.95082	4
GGCGATA	375	62.933334	8
ACGAGGG	960	62.499996	3
CGAGGGA	1070	62.056076	4
TAGCGCG	65	61.538464	1
AGGGTAA	1445	61.45329	6
TAGGGAC	1675	61.373135	5
TAGGGTA	1600	61.25	5
TACGCGG	120	59.999996	2
GTAGGGT	1775	59.71831	4
CGAGGGC	570	59.64912	4
CGGGTAT	255	59.607838	6
CGTAAGG	330	59.39394	2
GGCGATT	465	59.35484	8
GTAGGGA	2465	58.904667	4