##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547840_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1911647 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.180527576482476 33.0 31.0 34.0 31.0 34.0 2 32.62401845110525 34.0 31.0 34.0 31.0 34.0 3 32.69816760102676 34.0 31.0 34.0 31.0 34.0 4 36.25728442541955 37.0 37.0 37.0 35.0 37.0 5 36.245746207328025 37.0 37.0 37.0 35.0 37.0 6 36.294890217702324 37.0 37.0 37.0 35.0 37.0 7 36.424973857621204 37.0 37.0 37.0 35.0 37.0 8 36.40841693053163 37.0 37.0 37.0 35.0 37.0 9 38.19394741811642 39.0 39.0 39.0 37.0 39.0 10-11 37.91360931176101 39.0 38.0 39.0 35.0 39.0 12-13 37.4586322684052 39.0 37.0 39.0 35.0 39.0 14-15 38.713594873949006 40.0 38.0 41.0 35.0 41.0 16-17 38.798722776746956 40.0 38.0 41.0 35.0 41.0 18-19 38.553187905507656 40.0 37.5 41.0 35.0 41.0 20-21 38.31083301467268 40.0 35.5 41.0 35.0 41.0 22-23 38.14084294851507 40.0 35.0 41.0 34.0 41.0 24-25 38.10681914600342 40.0 35.0 41.0 34.0 41.0 26-27 38.10477091220294 40.0 35.0 41.0 34.5 41.0 28-29 37.980330050474805 40.0 35.0 41.0 34.0 41.0 30-31 37.75724623845302 40.0 35.0 41.0 34.0 41.0 32-33 37.307666373551186 40.0 35.0 41.0 33.0 41.0 34-35 36.8145031483323 40.0 35.0 41.0 31.5 41.0 36-37 36.596479894039014 40.0 35.0 41.0 31.0 41.0 38-39 36.487801618185784 40.0 35.0 41.0 31.0 41.0 40-41 36.35654647536914 40.0 35.0 41.0 30.0 41.0 42-43 36.28916609604179 40.0 35.0 41.0 30.0 41.0 44-45 36.13290816766903 39.0 35.0 41.0 30.0 41.0 46-47 35.99635471402408 39.0 35.0 41.0 29.0 41.0 48-49 35.86435414069648 39.0 35.0 41.0 29.0 41.0 50-51 35.644534006539914 38.5 35.0 40.5 28.5 41.0 52-53 35.44521085744387 38.0 35.0 40.0 28.0 41.0 54-55 35.23408741258193 37.5 35.0 40.0 27.5 41.0 56-57 34.93010425041862 37.0 35.0 40.0 26.5 41.0 58-59 34.655194709065015 36.5 34.5 40.0 26.0 41.0 60-61 34.27311318459945 36.0 34.0 39.5 25.5 41.0 62-63 33.89230961573972 35.5 34.0 39.0 24.5 40.5 64-65 33.46752721606029 35.0 34.0 38.5 22.5 40.0 66-67 33.05310473115591 35.0 33.5 38.0 20.5 40.0 68-69 32.46039854638435 35.0 33.0 37.0 18.5 39.5 70-71 32.088498294925785 35.0 33.0 36.5 16.5 39.0 72-73 31.789048396487424 35.0 33.0 36.0 15.0 39.0 74-75 31.475578127133303 35.0 32.5 36.0 12.5 37.5 76-77 29.660211064071973 33.0 29.5 34.5 10.5 36.0 78-79 30.64617186122752 34.0 31.0 35.0 11.0 36.0 80-81 30.69611204369844 35.0 32.0 35.0 10.0 36.0 82-83 30.481593882134096 35.0 31.5 35.0 10.0 36.0 84-85 30.23633024297896 34.0 31.0 35.0 10.0 35.5 86 29.83885937100312 34.0 30.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 11.0 10 18.0 11 25.0 12 39.0 13 82.0 14 193.0 15 607.0 16 1814.0 17 4877.0 18 12783.0 19 21876.0 20 25607.0 21 24710.0 22 20410.0 23 15508.0 24 12964.0 25 12591.0 26 13887.0 27 16304.0 28 20392.0 29 25855.0 30 33989.0 31 45083.0 32 57372.0 33 73551.0 34 171000.0 35 165841.0 36 175249.0 37 332529.0 38 449621.0 39 176504.0 40 349.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.081052098007632 23.09197252421603 28.505471983059632 17.321503394716704 2 34.18356004011201 24.387138420430134 28.491504969275184 12.937796570182675 3 28.024473137561483 24.172506744184467 35.36552512048511 12.43749499776894 4 25.903317924282042 25.59703752837213 34.03018444304832 14.469460104297498 5 23.62141127519882 29.598037713029658 32.493708304932866 14.286842706838657 6 21.370681930293618 39.419411638236554 28.971666840164527 10.238239591305298 7 83.0875679453372 4.033276018009601 10.558905488304065 2.3202505483491462 8 83.14662696617106 3.6828975223982248 10.754077504894994 2.416398006535726 9 78.45747672033592 5.935666992912394 12.141415229903847 3.4654410568478387 10-11 34.91442196179525 25.728834873802537 24.36671100888396 14.990032155518252 12-13 28.41416328433021 22.44616814715269 30.28485384592448 18.854814722592614 14-15 18.540452290616415 28.450257814334968 34.31172177708541 18.6975681179632 16-17 23.65172544931151 25.55597346162759 32.622183907384574 18.170117181676325 18-19 24.138138474310374 28.23248748330628 29.9619908905776 17.667383151805748 20-21 26.016178719188222 26.99967619544822 30.519049803650987 16.465095281712575 22-23 22.65985822696345 24.123622195938896 32.96976376914776 20.2467558079499 24-25 21.748759054365163 26.68672615812438 32.46417879451594 19.100335992994523 26-27 19.713629137597056 30.356807506825266 30.292491239229836 19.637072116347838 28-29 18.90848571938229 27.874157728911246 33.534303142787344 19.683053408919115 30-31 22.372252827012517 26.649297699836843 31.58765713544394 19.3907923377067 32-33 24.427417823478915 26.562749294195005 29.71116006250108 19.298672819825 34-35 21.176739220159373 27.194822056582623 30.576408719810715 21.05203000344729 36-37 22.192852550706277 28.928118005050095 29.40467042293896 19.474359021304664 38-39 21.295615770066338 28.8403664484081 28.414032507047587 21.449985274477974 40-41 20.92985786601815 26.771339059983358 29.544314405326926 22.75448866867157 42-43 20.652165384090264 27.423996166656288 29.104196538377643 22.819641910875806 44-45 21.39772667234066 28.324476223905354 28.386124634935218 21.891672468818772 46-47 21.218169463295265 28.41416328433021 28.826660989188902 21.54100626318562 48-49 20.86760787948821 27.091821868786443 30.416598880441835 21.623971371283506 50-51 19.409022690904752 27.756850506395793 30.280172019206475 22.553954783492976 52-53 21.028437781661573 25.743952727674095 30.833752256562015 22.39385723410232 54-55 20.606079469692887 25.827964054032986 31.195639153044468 22.370317323229656 56-57 21.63056254632785 26.57287145587025 29.395620634981253 22.400945362820647 58-59 22.119408028783557 27.987044679273946 28.885092279066164 21.008455012876333 60-61 22.878910175361874 28.522028387040077 28.116488033617088 20.482573403980968 62-63 22.231117983602623 27.415547954198654 29.43678932355189 20.91654473864683 64-65 21.246443511798986 30.10176565024819 28.164457140884274 20.48733369706855 66-67 20.42578990786479 30.200816364109063 26.616054114593336 22.757339613432816 68-69 19.571421920469625 31.088323314921634 27.303184112966463 22.037070651642274 70-71 19.783987315649803 29.850071692106333 28.859302998932336 21.506637993311525 72-73 20.8378952808756 30.786410880251424 27.663423215687832 20.712270623185137 74-75 19.646540391609957 30.9413296492501 27.01986820788566 22.392261751254285 76-77 21.275737623107194 29.035015355868527 27.439349419636578 22.2498976013877 78-79 19.243955604774314 29.54679917369682 27.822186836795705 23.387058384733166 80-81 18.45793182527946 29.025337836954208 28.359419913823004 24.157310423943333 82-83 19.8470219658755 29.523808527411177 28.081230478221137 22.547939028492184 84-85 18.636050484215964 28.705953557325177 28.11112616502942 24.546869793429433 86 18.90453624544699 29.286683158553856 28.26447560663658 23.544304989362576 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1008.0 1 1188.5 2 8345.5 3 9744.0 4 4446.0 5 5315.0 6 6449.0 7 6994.0 8 7268.5 9 7448.0 10 7144.0 11 6969.5 12 7028.0 13 7120.0 14 7188.0 15 7320.5 16 7498.5 17 7434.0 18 7437.0 19 7720.5 20 7963.0 21 8035.0 22 8292.0 23 8799.5 24 9873.5 25 11413.0 26 12558.0 27 13749.0 28 15459.5 29 16408.0 30 18185.0 31 22890.0 32 26887.0 33 29585.5 34 32453.0 35 37302.5 36 40914.0 37 42576.5 38 48637.5 39 57602.5 40 64501.0 41 72238.0 42 78136.5 43 78630.0 44 83126.0 45 87553.0 46 89349.0 47 92171.5 48 96427.5 49 97457.0 50 95188.0 51 88934.5 52 78150.0 53 72246.0 54 69078.0 55 64058.0 56 56240.0 57 51647.0 58 47733.0 59 38278.5 60 29323.0 61 23246.5 62 18991.5 63 14827.5 64 12257.0 65 10234.0 66 6591.0 67 4293.0 68 2843.5 69 1693.0 70 1159.5 71 1005.0 72 802.5 73 478.5 74 308.5 75 217.0 76 125.5 77 58.0 78 41.5 79 44.0 80 46.5 81 32.0 82 13.0 83 10.5 84 8.5 85 6.5 86 6.0 87 3.5 88 1.0 89 1.5 90 1.5 91 1.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1911647.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.388064467326757 #Duplication Level Percentage of deduplicated Percentage of total 1 77.46393176371336 17.342674982186153 2 7.790654402095476 3.48835345993553 3 2.8426452529582757 1.9092397554291076 4 1.582918083491088 1.417538883987832 5 0.9926396138640257 1.1111639834005074 6 0.7481161121276212 1.0049323048415422 7 0.578275386072665 0.9062526636284167 8 0.46145816658133754 0.8264924145917917 9 0.3917597784383501 0.7893668857845086 >10 5.023012076604697 27.0711768941197 >50 1.5600138687494143 24.743585521413067 >100 0.5579887814334241 16.54838529562629 >500 0.00446955584058094 0.651842550058805 >1k 0.0018819182486656588 0.6741727788076887 >5k 0.0 0.0 >10k+ 2.3523978108320735E-4 1.5148216261890124 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28763 1.5046187920677825 No Hit GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTC 2502 0.13088190445202488 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2302 0.12041972184195095 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0462182610073932E-4 0.0 0.0 0.0420579740924972 0.0 2 1.0462182610073932E-4 0.0 0.0 0.12664472049494493 0.0 3 1.0462182610073932E-4 0.0 0.0 0.19182411815570552 0.0 4 1.0462182610073932E-4 0.0 0.0 0.30549573221415877 0.0 5 1.0462182610073932E-4 0.0 0.0 0.6297710822134003 0.0 6 1.0462182610073932E-4 0.0 0.0 1.0713274992715704 0.0 7 1.0462182610073932E-4 0.0 0.0 1.370545921919685 0.0 8 1.0462182610073932E-4 0.0 0.0 1.8493477090697183 0.0 9 1.0462182610073932E-4 0.0 0.0 2.1364823108031974 0.0 10 1.0462182610073932E-4 0.0 0.0 2.531377393420438 0.0 11 1.0462182610073932E-4 0.0 0.0 2.9720445249567518 0.0 12 1.0462182610073932E-4 0.0 0.0 3.3051081083484557 0.0 13 1.0462182610073932E-4 0.0 0.0 3.452206395846095 0.0 14 1.0462182610073932E-4 0.0 0.0 3.532974445595866 0.0 15 1.0462182610073932E-4 0.0 0.0 3.6147364026935938 0.0 16 1.0462182610073932E-4 0.0 0.0 3.7637178830610463 0.0 17 1.0462182610073932E-4 0.0 0.0 3.9391163745189357 0.0 18 1.0462182610073932E-4 0.0 0.0 4.147836917589911 0.0 19 1.0462182610073932E-4 0.0 0.0 4.291011886608772 0.0 20 2.0924365220147863E-4 0.0 0.0 4.444335172759406 0.0 21 2.0924365220147863E-4 0.0 0.0 4.637937861958824 0.0 22 2.0924365220147863E-4 0.0 0.0 4.851732563595685 0.0 23 2.0924365220147863E-4 0.0 0.0 5.049886302230485 0.0 24 2.0924365220147863E-4 0.0 0.0 5.206609797729392 0.0 25 2.0924365220147863E-4 0.0 0.0 5.353760396140082 0.0 26 2.6155456525184825E-4 0.0 0.0 5.490344190114597 0.0 27 2.6155456525184825E-4 0.0 0.0 5.64774772748316 0.0 28 2.6155456525184825E-4 0.0 0.0 5.808917650591349 0.0 29 2.6155456525184825E-4 0.0 0.0 5.985728536701598 0.0 30 2.6155456525184825E-4 0.0 0.0 6.191258114076501 0.0 31 2.6155456525184825E-4 0.0 0.0 6.371469209535024 0.0 32 2.6155456525184825E-4 0.0 0.0 6.541008878731272 0.0 33 2.6155456525184825E-4 0.0 0.0 6.715675017406456 0.0 34 2.6155456525184825E-4 0.0 0.0 6.887045568559468 0.0 35 2.6155456525184825E-4 0.0 0.0 7.086873256411879 0.0 36 2.6155456525184825E-4 0.0 0.0 7.27650031621947 0.0 37 2.6155456525184825E-4 0.0 0.0 7.479518969767954 0.0 38 2.6155456525184825E-4 0.0 0.0 7.711465558233293 0.0 39 2.6155456525184825E-4 0.0 0.0 8.046726199973111 0.0 40 2.6155456525184825E-4 0.0 0.0 8.28709484543956 0.0 41 2.6155456525184825E-4 0.0 0.0 8.531909918515291 0.0 42 2.6155456525184825E-4 0.0 0.0 8.764118061545881 0.0 43 2.6155456525184825E-4 0.0 0.0 8.963265707528638 0.0 44 2.6155456525184825E-4 0.0 0.0 9.15446209472774 0.0 45 2.6155456525184825E-4 0.0 0.0 9.341787474361114 0.0 46 2.6155456525184825E-4 0.0 0.0 9.559662427215903 0.0 47 2.6155456525184825E-4 0.0 0.0 9.788156495419917 0.0 48 3.138654783022179E-4 0.0 0.0 10.00352052444829 0.0 49 3.661763913525876E-4 0.0 0.0 10.22008770447682 0.0 50 3.661763913525876E-4 0.0 0.0 10.426245012808327 0.0 51 3.661763913525876E-4 0.0 0.0 10.646526267663434 0.0 52 3.661763913525876E-4 0.0 0.0 10.900914237827381 0.0 53 3.661763913525876E-4 0.0 0.0 11.125275743900417 0.0 54 3.661763913525876E-4 0.0 0.0 11.344039982277062 0.0 55 3.661763913525876E-4 0.0 0.0 11.55720695295732 0.0 56 3.661763913525876E-4 0.0 0.0 11.773146402029244 5.231091305036966E-5 57 3.661763913525876E-4 0.0 0.0 11.99180601857979 5.231091305036966E-5 58 3.661763913525876E-4 0.0 0.0 12.220404708609905 5.231091305036966E-5 59 3.661763913525876E-4 0.0 0.0 12.449997305987978 5.231091305036966E-5 60 3.661763913525876E-4 0.0 0.0 12.691673724280685 5.231091305036966E-5 61 3.661763913525876E-4 0.0 0.0 12.953646776836937 5.231091305036966E-5 62 3.661763913525876E-4 0.0 0.0 13.27520195935756 5.231091305036966E-5 63 3.661763913525876E-4 0.0 0.0 13.563644333917297 5.231091305036966E-5 64 3.661763913525876E-4 0.0 0.0 13.83011612499588 5.231091305036966E-5 65 3.661763913525876E-4 0.0 0.0 14.07064170320148 5.231091305036966E-5 66 3.661763913525876E-4 0.0 0.0 14.32377421145222 5.231091305036966E-5 67 3.661763913525876E-4 0.0 0.0 14.56314894957071 5.231091305036966E-5 68 4.1848730440295726E-4 0.0 0.0 14.851015904086895 5.231091305036966E-5 69 4.1848730440295726E-4 0.0 0.0 15.19998200504591 5.231091305036966E-5 70 4.1848730440295726E-4 0.0 0.0 15.480786986300295 5.231091305036966E-5 71 4.1848730440295726E-4 0.0 0.0 15.750606675814101 5.231091305036966E-5 72 4.1848730440295726E-4 0.0 0.0 15.998246538194552 5.231091305036966E-5 73 4.1848730440295726E-4 0.0 0.0 16.256034717706772 5.231091305036966E-5 74 4.1848730440295726E-4 0.0 0.0 16.538042849961315 5.231091305036966E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 13050 0.0 75.586205 1 ACGGGTA 205 0.0 66.34146 5 TAACGGG 405 0.0 65.18519 3 CCGATCC 1930 0.0 64.455956 80 GGGCGAT 1325 0.0 64.0 7 TACGGGA 610 0.0 62.95082 4 GGCGATA 375 0.0 62.933334 8 ACGAGGG 960 0.0 62.499996 3 CGAGGGA 1070 0.0 62.056076 4 TAGCGCG 65 0.0 61.538464 1 AGGGTAA 1445 0.0 61.45329 6 TAGGGAC 1675 0.0 61.373135 5 TAGGGTA 1600 0.0 61.25 5 TACGCGG 120 0.0 59.999996 2 GTAGGGT 1775 0.0 59.71831 4 CGAGGGC 570 0.0 59.64912 4 CGGGTAT 255 0.0 59.607838 6 CGTAAGG 330 0.0 59.39394 2 GGCGATT 465 0.0 59.35484 8 GTAGGGA 2465 0.0 58.904667 4 >>END_MODULE