##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547839_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1194418 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.071110783662 33.0 31.0 34.0 31.0 34.0 2 32.505149788432526 34.0 31.0 34.0 31.0 34.0 3 32.60472548136415 34.0 31.0 34.0 31.0 34.0 4 36.120887327552 37.0 35.0 37.0 35.0 37.0 5 36.08543993811212 37.0 35.0 37.0 35.0 37.0 6 36.130450981147305 37.0 36.0 37.0 35.0 37.0 7 36.35016217103225 37.0 37.0 37.0 35.0 37.0 8 36.3607731966531 37.0 37.0 37.0 35.0 37.0 9 38.176942243000354 39.0 39.0 39.0 37.0 39.0 10-11 37.71339891059914 39.0 37.5 39.0 35.0 39.0 12-13 36.678082128702016 39.0 35.0 39.0 33.5 39.0 14-15 37.73889584718248 40.0 35.0 41.0 33.0 41.0 16-17 37.96886935729368 40.0 35.0 41.0 34.0 41.0 18-19 37.83522058441852 39.0 36.0 41.0 34.0 41.0 20-21 37.61263100522598 39.0 35.0 41.0 34.0 41.0 22-23 37.41047397142374 39.0 35.0 41.0 33.0 41.0 24-25 37.3939416519175 39.0 35.0 41.0 34.0 41.0 26-27 37.353696946964966 39.0 35.0 41.0 33.5 41.0 28-29 37.33587487797404 39.0 35.0 41.0 33.5 41.0 30-31 37.224879397329914 39.0 35.0 41.0 33.5 41.0 32-33 36.856791759668724 39.0 35.0 41.0 32.5 41.0 34-35 36.570274393051676 39.0 35.0 41.0 32.0 41.0 36-37 36.37360706218426 38.0 35.0 41.0 31.0 41.0 38-39 36.345059267358664 38.0 35.0 41.0 31.0 41.0 40-41 36.2389950586813 38.0 35.0 41.0 31.0 41.0 42-43 36.18396114258158 38.0 35.0 41.0 31.0 41.0 44-45 36.024655941219905 38.0 35.0 41.0 31.0 41.0 46-47 35.90084543267098 38.0 35.0 40.0 30.0 41.0 48-49 35.84093508302789 37.0 35.0 40.0 30.0 41.0 50-51 35.629686592131065 37.0 35.0 40.0 30.0 41.0 52-53 35.419429797608544 36.5 35.0 40.0 29.0 41.0 54-55 35.26122848115149 36.0 35.0 40.0 29.0 41.0 56-57 34.95307630996854 36.0 34.5 40.0 28.5 41.0 58-59 34.691152092483534 35.5 34.0 39.0 28.0 41.0 60-61 34.33959635571466 35.0 34.0 39.0 27.0 40.5 62-63 33.861218601863 35.0 33.5 38.5 26.0 40.0 64-65 33.566711988600304 35.0 33.0 38.0 26.0 40.0 66-67 33.320837010158925 35.0 33.0 37.0 25.5 40.0 68-69 33.00761919194118 35.0 33.5 36.5 25.0 39.0 70-71 32.77303464951131 35.0 33.0 36.0 24.5 39.0 72-73 32.56354015093544 35.0 33.0 36.0 24.0 38.5 74-75 32.26820049597377 35.0 33.0 35.0 24.0 37.5 76-77 30.31826839515145 33.0 30.0 34.5 19.5 35.5 78-79 31.27000221028149 34.0 31.5 35.0 20.0 36.0 80-81 31.644887719374623 35.0 32.5 35.0 21.0 36.0 82-83 31.542606106070068 35.0 32.5 35.0 20.0 36.0 84-85 31.374511268249474 35.0 32.0 35.0 20.0 36.0 86 30.995888374086793 34.0 31.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 5.0 10 4.0 11 6.0 12 8.0 13 33.0 14 138.0 15 419.0 16 1022.0 17 2535.0 18 4928.0 19 8207.0 20 10422.0 21 11167.0 22 9609.0 23 8163.0 24 7803.0 25 8684.0 26 10066.0 27 12174.0 28 15173.0 29 18648.0 30 23535.0 31 29863.0 32 37713.0 33 52073.0 34 160254.0 35 145609.0 36 94130.0 37 180739.0 38 240325.0 39 100597.0 40 364.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.157616512812098 24.05631864221738 30.954657414740904 14.831407430229618 2 30.825054545393655 24.551455185705507 31.150987342789545 13.472502926111293 3 28.63788054098314 23.973098195104225 33.66895006605727 13.720071197855358 4 25.429037405665355 28.363855869553205 32.209661944143505 13.997444780637935 5 23.750060699018267 31.201388458646807 30.519968721167967 14.528582121166961 6 22.406393741554464 40.00015070101087 26.977155401207952 10.616300156226714 7 88.37191000135631 3.5109986621099147 6.633691052880984 1.4834002836527915 8 89.63763104708737 2.5814245934003 6.1422383118807655 1.6387060476315662 9 85.96714048180787 4.726234869199895 6.949577116218945 2.357047532773284 10-11 44.952730116257456 25.040019490664072 18.078218848007985 11.929031545070485 12-13 31.378336562242033 27.72316726640087 25.38483177581048 15.513664395546616 14-15 14.608872270846554 33.890145660899286 35.80735554889494 15.693626519359219 16-17 19.211783479485405 23.56465659425762 34.65583238028898 22.567727545967994 18-19 25.043326540624804 26.856050394418034 29.548993735861316 18.551629329095846 20-21 28.396717062201006 26.639166522942553 27.686287380129905 17.277829034726537 22-23 21.32243485948805 24.56309265265594 30.074772818226116 24.039699669629893 24-25 18.98782503277747 25.626623175471234 36.424894802322136 18.96065698942916 26-27 17.369421760221297 35.514283944146854 28.859076135825145 18.2572181598067 28-29 15.381424258509165 26.729670852247704 38.31803438997068 19.57087049927245 30-31 22.745429154617565 28.96653432885305 30.091349929421696 18.196686587107695 32-33 27.296599682858098 27.582847880725176 27.079715811382616 18.040836625034117 34-35 19.5393070097738 27.75987970710421 29.515002285631997 23.18581099748999 36-37 23.490394485012782 28.666764901399677 30.24146488080387 17.601375732783666 38-39 18.78220187572525 32.1991965961665 27.610769429127824 21.40783209898042 40-41 20.71531909264596 26.14980685153774 28.41053132153065 24.72434273428565 42-43 22.77477399034509 24.279565445262882 26.360327791443193 26.58533277294883 44-45 18.303809889000334 33.10997489990941 27.40443462841317 21.18178058267709 46-47 21.484689614523557 30.31656421788687 26.869362317044786 21.329383850544783 48-49 20.77233430842469 25.579445386790887 32.09094303669235 21.557277268092076 50-51 18.140717906126667 31.996168845412576 28.635033966333395 21.228079282127364 52-53 23.224365339437284 25.010088595449837 29.8545818967899 21.910964168322984 54-55 23.247514689162422 26.158514021054607 30.978476546736573 19.615494743046405 56-57 23.812727202704583 23.297455329708693 29.309211683012144 23.58060578457458 58-59 25.224209615059383 26.18551461883528 27.506702008844474 21.083573757260858 60-61 26.04352077748326 28.784269828485503 26.108447796332605 19.06376159769863 62-63 24.873536735045853 24.30292410194756 30.885167504173584 19.938371658833002 64-65 19.645007024341563 30.173607564520964 30.45265560297986 19.728729808157613 66-67 18.26228338822757 28.268663064354353 25.13445879080858 28.334594756609494 68-69 17.119802280273742 32.731882808196126 24.097342806287248 26.050972105242888 70-71 19.444825848237386 29.61078115031756 28.636080501131094 22.30831250031396 72-73 24.080388942564497 30.19106376494661 25.6853965697101 20.043150722778794 74-75 22.435445547538635 31.27615290459454 23.78375911950423 22.5046424283626 76-77 28.73889207965721 26.52417327937121 24.98827881026575 19.748655830705832 78-79 19.392038633041363 28.36573963218907 30.693819081761998 21.548402653007575 80-81 16.103491407530697 27.77796382840848 31.39909981262841 24.71944495143241 82-83 18.929051638538603 26.380337536775233 31.895157306738515 22.795453517947653 84-85 16.960938297982782 25.898596638697676 28.78133953105194 28.359125532267598 86 18.752564010254368 25.39219938078629 32.068337885062014 23.78689872389733 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 725.0 1 786.0 2 2474.0 3 2645.0 4 1307.0 5 1606.5 6 1996.0 7 2204.0 8 2293.0 9 2395.0 10 2349.0 11 2294.5 12 2318.5 13 2415.5 14 2493.0 15 2489.5 16 2636.5 17 2901.0 18 2816.0 19 2717.5 20 2866.5 21 2915.0 22 3030.0 23 3530.0 24 4048.0 25 5163.5 26 5895.0 27 6699.5 28 9787.5 29 11820.0 30 14112.0 31 15787.0 32 17824.5 33 19425.0 34 20139.0 35 25748.0 36 29589.0 37 29035.5 38 28301.0 39 31849.5 40 38767.0 41 48180.0 42 57758.5 43 61112.0 44 67371.0 45 71391.0 46 73025.0 47 80003.0 48 80410.0 49 68019.0 50 58326.0 51 51480.0 52 40209.5 53 35309.5 54 35450.5 55 34993.0 56 32093.5 57 30268.0 58 27402.0 59 20411.0 60 14010.5 61 10188.0 62 7719.0 63 5917.5 64 5038.0 65 4391.5 66 2983.5 67 1718.5 68 1136.0 69 831.5 70 461.5 71 317.0 72 273.5 73 161.5 74 85.5 75 66.0 76 40.5 77 36.5 78 32.0 79 18.0 80 17.0 81 12.0 82 5.5 83 4.0 84 3.5 85 2.5 86 3.0 87 2.0 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1194418.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.919936017291356 #Duplication Level Percentage of deduplicated Percentage of total 1 81.10656208324343 12.912112789477046 2 8.397511913839699 2.6737570474553976 3 2.541362543329114 1.2137498725962097 4 1.1179901413903328 0.7119332607558645 5 0.6332233374824088 0.504043750868782 6 0.4201422986098019 0.4013183107215459 7 0.2845132291093232 0.31706026824453676 8 0.2244608887985445 0.28587223904457426 9 0.19120547041137434 0.2739580969594657 >10 2.06256507028949 7.945468961853621 >50 1.0365270017408013 12.161411885604872 >100 1.9733267382168758 58.89275685717483 >500 0.007956962654100307 0.7404537207167894 >1k 0.0021218567077600815 0.40164209577201765 >5k 5.304641769400204E-4 0.5644608427544504 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6684 0.5596030870264849 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1580 0.1322819984293606 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.3722783816051E-5 0.0 0.0 0.03089370722812282 0.0 2 8.3722783816051E-5 0.0 0.0 0.12977031491487906 0.0 3 8.3722783816051E-5 0.0 0.0 0.2017719089966829 0.0 4 8.3722783816051E-5 0.0 0.0 0.3551520489476883 0.0 5 8.3722783816051E-5 0.0 0.0 0.6265813140793257 0.0 6 8.3722783816051E-5 0.0 0.0 0.8608376631966363 0.0 7 8.3722783816051E-5 0.0 0.0 0.9947941173023179 0.0 8 8.3722783816051E-5 0.0 0.0 1.2694048482189653 0.0 9 1.67445567632102E-4 0.0 0.0 1.349611275114742 0.0 10 1.67445567632102E-4 0.0 0.0 1.510442742825376 0.0 11 1.67445567632102E-4 0.0 0.0 1.7656297878966996 0.0 12 1.67445567632102E-4 0.0 0.0 1.9774484309513085 0.0 13 1.67445567632102E-4 0.0 0.0 2.047691846572975 0.0 14 1.67445567632102E-4 0.0 0.0 2.0754878107999044 0.0 15 1.67445567632102E-4 0.0 0.0 2.1224562925207087 0.0 16 1.67445567632102E-4 0.0 0.0 2.231630802616839 0.0 17 1.67445567632102E-4 0.0 0.0 2.36709426683121 0.0 18 1.67445567632102E-4 0.0 0.0 2.550949500091258 0.0 19 1.67445567632102E-4 0.0 0.0 2.653342464698288 0.0 20 1.67445567632102E-4 0.0 0.0 2.764693767173636 0.0 21 1.67445567632102E-4 0.0 0.0 2.9030875288215685 0.0 22 1.67445567632102E-4 0.0 0.0 3.048681449877681 0.0 23 1.67445567632102E-4 0.0 0.0 3.2023127581801347 0.0 24 1.67445567632102E-4 0.0 0.0 3.3196921010902383 0.0 25 1.67445567632102E-4 0.0 0.0 3.4221687884810845 0.0 26 1.67445567632102E-4 0.0 0.0 3.5160220291388775 0.0 27 1.67445567632102E-4 0.0 0.0 3.6148986368256337 0.0 28 1.67445567632102E-4 0.0 0.0 3.720221898866226 0.0 29 1.67445567632102E-4 0.0 0.0 3.835508172180928 0.0 30 1.67445567632102E-4 0.0 0.0 3.977753181884399 0.0 31 1.67445567632102E-4 0.0 0.0 4.110621239800472 0.0 32 1.67445567632102E-4 0.0 0.0 4.231600662414666 0.0 33 1.67445567632102E-4 0.0 0.0 4.353249867299388 0.0 34 1.67445567632102E-4 0.0 0.0 4.481010835402682 0.0 35 1.67445567632102E-4 0.0 0.0 4.649293630872944 0.0 36 2.51168351448153E-4 0.0 0.0 4.781408183734673 0.0 37 2.51168351448153E-4 0.0 0.0 4.924155530141039 0.0 38 2.51168351448153E-4 0.0 0.0 5.0731820853336105 0.0 39 2.51168351448153E-4 0.0 0.0 5.235185672017669 0.0 40 2.51168351448153E-4 0.0 0.0 5.400287001702922 0.0 41 2.51168351448153E-4 0.0 0.0 5.580039818555983 0.0 42 2.51168351448153E-4 0.0 0.0 5.741875959672409 0.0 43 2.51168351448153E-4 0.0 0.0 5.888139662999051 0.0 44 2.51168351448153E-4 0.0 0.0 6.0384220599488625 0.0 45 2.51168351448153E-4 0.0 0.0 6.194648774549614 0.0 46 2.51168351448153E-4 0.0 0.0 6.374317868618859 0.0 47 2.51168351448153E-4 0.0 0.0 6.553568348769024 0.0 48 2.51168351448153E-4 0.0 0.0 6.720092965779149 0.0 49 2.51168351448153E-4 0.0 0.0 6.904115644606829 0.0 50 2.51168351448153E-4 0.0 0.0 7.0849568576495 0.0 51 2.51168351448153E-4 0.0 0.0 7.2696493187477085 0.0 52 2.51168351448153E-4 0.0 0.0 7.46974677206807 0.0 53 2.51168351448153E-4 0.0 0.0 7.664737135575653 0.0 54 3.34891135264204E-4 0.0 0.0 7.86726254962668 0.0 55 3.34891135264204E-4 0.0 0.0 8.067694894082306 0.0 56 4.1861391908025496E-4 0.0 0.0 8.288555597789049 0.0 57 5.02336702896306E-4 0.0 0.0 8.492336853597317 0.0 58 5.02336702896306E-4 0.0 0.0 8.672926898288539 0.0 59 5.02336702896306E-4 0.0 0.0 8.870345222526787 0.0 60 5.02336702896306E-4 8.3722783816051E-5 0.0 9.073707864415974 0.0 61 5.02336702896306E-4 8.3722783816051E-5 0.0 9.297917479475359 0.0 62 5.02336702896306E-4 8.3722783816051E-5 0.0 9.549169553707328 0.0 63 5.02336702896306E-4 8.3722783816051E-5 0.0 9.815073115107106 0.0 64 5.02336702896306E-4 8.3722783816051E-5 0.0 10.076790537316082 0.0 65 5.02336702896306E-4 8.3722783816051E-5 0.0 10.2896975765603 0.0 66 5.02336702896306E-4 8.3722783816051E-5 0.0 10.495488179180153 0.0 67 5.02336702896306E-4 8.3722783816051E-5 0.0 10.71392092215623 0.0 68 5.02336702896306E-4 8.3722783816051E-5 0.0 10.956633272438962 0.0 69 5.02336702896306E-4 8.3722783816051E-5 0.0 11.223457784460717 0.0 70 5.02336702896306E-4 8.3722783816051E-5 0.0 11.449006964061159 0.0 71 5.02336702896306E-4 8.3722783816051E-5 0.0 11.675560817067392 0.0 72 5.02336702896306E-4 8.3722783816051E-5 0.0 11.912998631969712 0.0 73 5.02336702896306E-4 8.3722783816051E-5 0.0 12.151189951926378 0.0 74 5.02336702896306E-4 8.3722783816051E-5 0.0 12.42060987024643 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTGT 30 4.060348E-8 80.00001 80 CGGGTAG 40 4.1836756E-11 80.0 6 TAGGTCG 25 1.2848359E-6 80.0 1 AAGCGTA 25 1.2848359E-6 80.0 1 TCGCGAG 35 1.2896635E-9 80.0 1 CGTAAGG 205 0.0 78.04878 2 CTAGCGG 110 0.0 76.36363 2 GTATGCG 75 0.0 74.666664 1 CGTTTTT 4065 0.0 73.70234 1 GTTAGCG 60 0.0 73.333336 1 CGCTAGG 160 0.0 72.5 2 CGGGACG 105 0.0 72.38096 6 CGGGTTG 35 1.1815246E-7 68.57143 6 CTACGGG 435 0.0 68.045975 3 GCGATAA 100 0.0 68.0 9 CGAGGGA 825 0.0 67.393936 4 TAGCACG 30 3.795676E-6 66.66667 1 TATCGTG 30 3.795676E-6 66.66667 1 CGCGAGG 90 0.0 66.666664 2 GCTAGCG 90 0.0 66.666664 1 >>END_MODULE