##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547837_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1573606 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06787721958356 33.0 31.0 34.0 31.0 34.0 2 32.48894195878765 34.0 31.0 34.0 31.0 34.0 3 32.59278053083173 34.0 31.0 34.0 31.0 34.0 4 36.110916582676985 37.0 35.0 37.0 35.0 37.0 5 36.07906998321054 37.0 35.0 37.0 35.0 37.0 6 36.14184808649687 37.0 36.0 37.0 35.0 37.0 7 36.380517740781364 37.0 37.0 37.0 35.0 37.0 8 36.39669142085122 37.0 37.0 37.0 35.0 37.0 9 38.214795825638696 39.0 39.0 39.0 37.0 39.0 10-11 37.72369417757685 39.0 37.5 39.0 35.0 39.0 12-13 37.01766071049551 39.0 35.0 39.0 33.5 39.0 14-15 38.19833808462855 40.0 36.0 41.0 33.5 41.0 16-17 38.36479271177156 40.0 36.0 41.0 34.0 41.0 18-19 38.242416780312226 40.0 36.0 41.0 34.0 41.0 20-21 38.061531603209446 40.0 35.0 41.0 34.0 41.0 22-23 37.88408248316288 40.0 35.0 41.0 34.0 41.0 24-25 37.84460690922633 40.0 35.0 41.0 34.0 41.0 26-27 37.838450984553944 40.0 35.0 41.0 34.0 41.0 28-29 37.779834660010195 40.0 35.0 41.0 34.0 41.0 30-31 37.625763374059325 40.0 35.0 41.0 33.5 41.0 32-33 37.31778157937883 40.0 35.0 41.0 33.0 41.0 34-35 37.04786204424742 40.0 35.0 41.0 32.5 41.0 36-37 36.87260756504487 40.0 35.0 41.0 32.0 41.0 38-39 36.78745441997552 39.5 35.0 41.0 32.0 41.0 40-41 36.68105103818872 39.0 35.0 41.0 31.0 41.0 42-43 36.62821633877857 39.0 35.0 41.0 31.0 41.0 44-45 36.5110186412609 39.0 35.0 41.0 31.0 41.0 46-47 36.392818469172084 39.0 35.0 41.0 31.0 41.0 48-49 36.29918639100258 39.0 35.0 41.0 31.0 41.0 50-51 36.08773511285544 38.0 35.0 40.0 30.5 41.0 52-53 35.903498715688684 38.0 35.0 40.0 30.0 41.0 54-55 35.73591547058158 38.0 35.0 40.0 29.5 41.0 56-57 35.44659177710304 37.0 35.0 40.0 29.0 41.0 58-59 35.20301333370615 37.0 35.0 40.0 28.5 41.0 60-61 34.851269313919744 36.0 34.0 39.5 28.0 41.0 62-63 34.466229475484965 36.0 34.0 39.0 27.0 41.0 64-65 34.12279852771279 35.0 34.0 39.0 26.0 40.0 66-67 33.84089441702688 35.0 34.0 38.0 26.0 40.0 68-69 33.39604577003392 35.0 33.5 37.5 25.5 40.0 70-71 33.09877567828288 35.0 33.0 37.0 25.0 39.0 72-73 32.81710415440714 35.0 33.0 36.5 24.5 39.0 74-75 32.50913983551156 35.0 33.0 36.0 24.0 38.5 76-77 30.54669180214107 33.0 30.0 34.5 20.0 36.0 78-79 31.559269918899645 34.0 31.5 35.0 20.5 37.0 80-81 31.712069285450106 35.0 32.0 35.0 20.0 36.5 82-83 31.521241022212678 35.0 32.0 35.0 20.0 36.0 84-85 31.304438340982433 34.5 32.0 35.0 19.5 36.0 86 30.89933058211522 34.0 31.0 35.0 18.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 4.0 10 5.0 11 13.0 12 28.0 13 72.0 14 195.0 15 548.0 16 1402.0 17 3156.0 18 6955.0 19 11433.0 20 12871.0 21 12241.0 22 10688.0 23 9510.0 24 9649.0 25 10800.0 26 12597.0 27 15212.0 28 18814.0 29 23510.0 30 29807.0 31 37803.0 32 47974.0 33 63581.0 34 163829.0 35 152438.0 36 127406.0 37 241234.0 38 374594.0 39 174832.0 40 403.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.31978017369024 24.12586123845486 29.316232907093642 14.238125680761257 2 30.81476557664371 25.554808509881127 31.395724215591454 12.234701697883715 3 29.16657663989588 25.057670090225887 33.33826891864927 12.437484351228962 4 26.198235136368314 27.201027449056497 32.86121176457131 13.739525650003875 5 23.861436725584422 31.747845394590513 31.18207480144331 13.208643078381755 6 21.69329552632616 41.34255970045869 26.021761482861656 10.942383290353494 7 89.5504338443041 2.93809250854407 6.215278792785488 1.2961948543663406 8 90.89549734812907 2.2456701359806712 5.678104938593269 1.1807275772969854 9 87.03646274861687 4.824142765088593 6.620589906240825 1.5188045800537109 10-11 38.79541638758368 29.790652806356867 20.139030989968266 11.274899816091194 12-13 27.541265094312045 26.731119479717286 29.366658490117604 16.360956935853068 14-15 16.10307789878788 31.819400790286767 35.42707005438464 16.65045125654071 16-17 21.690054562577927 26.09245897638926 32.87674932607019 19.340737134962627 18-19 23.799921962676805 28.499192300995297 30.202700040543824 17.498185695784077 20-21 25.631098254582152 28.427541582835858 29.580562097500902 16.360798065081095 22-23 20.94564967342524 25.236367934540162 32.20723611882517 21.61074627320943 24-25 19.001230295258154 28.82208125795148 34.16983031330587 18.006858133484492 26-27 17.835976731151256 33.58486813090443 30.346192121789063 18.232963016155253 28-29 16.508611431323978 28.880069089721317 36.22485552291997 18.38646395603474 30-31 21.799389427849157 28.473868299942932 31.229100549947063 18.497641722260845 32-33 23.889588626377886 28.587016063741494 28.697399476107744 18.825995833772875 34-35 19.390590783207486 29.23479574938072 30.538044466022622 20.836569001389165 36-37 21.930076524873442 29.572936300446234 30.194692953636427 18.302294221043898 38-39 19.48445163528863 31.492031677560966 28.892175042545592 20.13134164460481 40-41 20.51749294296031 27.553116853901166 29.667941022085582 22.261449181052946 42-43 20.781250198588467 28.470627336194703 28.176652859737445 22.57146960547939 44-45 19.406509634559097 31.247688430267807 29.101916235703218 20.243885699469878 46-47 20.990292360349414 29.307780982024727 28.901230676548007 20.800695981077855 48-49 20.806955489493557 28.16629448540486 30.97122151288188 20.055528512219702 50-51 19.086099061645672 31.200630907609657 29.389440558818407 20.323829471926263 52-53 21.62212142048264 27.381059807855333 29.72116273069625 21.27565604096578 54-55 20.945395480190086 28.393956301640944 30.422259447409328 20.238388770759645 56-57 21.734252411340577 26.204272225703257 30.2598617442994 21.801613618656766 58-59 22.106041791909792 28.240487135915853 29.053333553634136 20.60013751854022 60-61 23.31533433400737 29.734094811534778 27.59092809763054 19.359642756827313 62-63 22.719219423413485 27.078410987248397 30.369196609570633 19.83317297976749 64-65 20.32973946464363 30.306823944494365 30.138452700358286 19.224983890503722 66-67 18.752375118040984 30.600480679407678 27.077807278314904 23.569336924236435 68-69 19.171762181893055 31.796269205887622 26.77588926325904 22.256079348960288 70-71 19.195592797688874 30.560953631341008 29.02025665890954 21.22319691206058 72-73 22.3113346034522 30.369959189276095 27.50335852811949 19.815347679152215 74-75 21.0896183669864 31.799065331474335 25.704369454615705 21.406946846923564 76-77 23.876783642156933 29.529373934771474 27.024299602314684 19.56954282075691 78-79 18.929706673716293 30.022667681744984 29.384928628894396 21.662697015644323 80-81 17.705607375670912 29.531185061571957 29.756559138691642 23.00664842406549 82-83 19.346106967055285 28.43278431831094 30.90560788405738 21.315500830576394 84-85 17.44305753790974 28.25297437859286 29.47338787472849 24.830580208768904 86 18.931295381436016 28.261013239654652 30.346859379031343 22.460831999877986 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 777.0 1 891.0 2 4342.0 3 4687.0 4 1822.5 5 2314.0 6 3031.0 7 3384.0 8 3698.5 9 4131.5 10 4068.5 11 3840.5 12 3767.0 13 3684.0 14 3628.0 15 3692.0 16 3728.5 17 4184.5 18 4357.5 19 4237.5 20 4738.0 21 5048.0 22 5313.5 23 5673.5 24 7012.0 25 8847.0 26 10306.0 27 12637.0 28 17290.0 29 20480.0 30 22264.0 31 26525.0 32 31855.5 33 35265.5 34 38718.5 35 43475.5 36 45336.0 37 45778.0 38 49546.0 39 54340.0 40 60747.5 41 70549.0 42 77039.0 43 78667.0 44 83074.5 45 89113.0 46 91556.0 47 90672.0 48 89504.5 49 82724.0 50 75415.0 51 65523.5 52 51949.5 53 45384.0 54 41084.0 55 37331.0 56 32241.0 57 29487.0 58 25860.0 59 19537.5 60 13549.0 61 8872.5 62 6175.0 63 3932.0 64 3003.0 65 2394.5 66 1437.5 67 1016.5 68 682.0 69 364.5 70 293.5 71 278.0 72 189.0 73 103.0 74 82.5 75 48.0 76 31.0 77 27.0 78 21.5 79 14.0 80 12.5 81 11.0 82 8.0 83 3.5 84 2.5 85 2.5 86 2.0 87 1.0 88 1.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1573606.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.11852951810853 #Duplication Level Percentage of deduplicated Percentage of total 1 78.53473717167894 15.014686908136394 2 7.97843849698354 3.0507202382598657 3 2.656208141495554 1.5234838127826884 4 1.3191158318992025 1.0087821987987677 5 0.8523629015424886 0.8147962646640351 6 0.598027824107134 0.6860047564705475 7 0.4542936746580327 0.6079798920187715 8 0.3664276051849339 0.5604445588782381 9 0.3106183409036989 0.5344709327489938 >10 4.069233114393078 18.785755319447627 >50 1.6252898641890154 22.546517001169207 >100 1.2302120586453222 33.327396544193135 >500 0.003020984591488985 0.36649887578322965 >1k 0.001678324773049436 0.37477734802557544 >5k 0.0 0.0 >10k+ 3.3566495460988724E-4 0.7976853486229285 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12430 0.7899054782455074 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03196479932079568 0.0 2 6.354830878885821E-5 0.0 0.0 0.09589439796238702 0.0 3 6.354830878885821E-5 0.0 0.0 0.14476304742101898 0.0 4 6.354830878885821E-5 0.0 0.0 0.23385777634299817 0.0 5 6.354830878885821E-5 0.0 0.0 0.45659459864794616 0.0 6 6.354830878885821E-5 0.0 0.0 0.6342121217128048 0.0 7 6.354830878885821E-5 0.0 0.0 0.7713493720791609 0.0 8 6.354830878885821E-5 0.0 0.0 1.0758093194865805 0.0 9 6.354830878885821E-5 0.0 0.0 1.1736101667126333 0.0 10 6.354830878885821E-5 0.0 0.0 1.3670512186659176 0.0 11 6.354830878885821E-5 0.0 0.0 1.7116736972278956 0.0 12 6.354830878885821E-5 0.0 0.0 1.9914133525164495 0.0 13 6.354830878885821E-5 0.0 0.0 2.0826687239372497 0.0 14 6.354830878885821E-5 0.0 0.0 2.1171754556096 0.0 15 6.354830878885821E-5 0.0 0.0 2.168141199258264 0.0 16 6.354830878885821E-5 0.0 0.0 2.2834178314012528 0.0 17 6.354830878885821E-5 0.0 0.0 2.442987634770076 0.0 18 6.354830878885821E-5 0.0 0.0 2.6234012834216442 0.0 19 6.354830878885821E-5 0.0 0.0 2.7565349903343024 0.0 20 6.354830878885821E-5 0.0 0.0 2.8940535305533914 0.0 21 6.354830878885821E-5 0.0 0.0 3.062901387005388 0.0 22 6.354830878885821E-5 0.0 0.0 3.2686072625549216 0.0 23 6.354830878885821E-5 0.0 0.0 3.4704366912683353 0.0 24 6.354830878885821E-5 0.0 0.0 3.61043361553019 0.0 25 6.354830878885821E-5 0.0 0.0 3.737657329725484 0.0 26 6.354830878885821E-5 0.0 0.0 3.860750403849502 0.0 27 6.354830878885821E-5 0.0 0.0 3.996362494804926 0.0 28 6.354830878885821E-5 0.0 0.0 4.138964899727124 0.0 29 6.354830878885821E-5 0.0 0.0 4.309210818972475 0.0 30 6.354830878885821E-5 0.0 0.0 4.511612182464988 0.0 31 6.354830878885821E-5 0.0 0.0 4.6800787490642515 0.0 32 6.354830878885821E-5 0.0 0.0 4.832975980010244 0.0 33 6.354830878885821E-5 0.0 0.0 4.9904486891890345 0.0 34 6.354830878885821E-5 0.0 0.0 5.172133304016381 0.0 35 6.354830878885821E-5 0.0 0.0 5.372691766554016 0.0 36 6.354830878885821E-5 0.0 0.0 5.543128330725734 0.0 37 6.354830878885821E-5 0.0 0.0 5.723986817538825 0.0 38 6.354830878885821E-5 0.0 0.0 5.934903654409045 0.0 39 6.354830878885821E-5 0.0 0.0 6.257093579968556 0.0 40 6.354830878885821E-5 0.0 0.0 6.460702361328058 0.0 41 6.354830878885821E-5 0.0 0.0 6.661578565409639 0.0 42 1.2709661757771641E-4 0.0 0.0 6.877897008526912 0.0 43 1.2709661757771641E-4 0.0 0.0 7.072545478347185 0.0 44 1.2709661757771641E-4 0.0 0.0 7.268020076181712 0.0 45 1.906449263665746E-4 0.0 0.0 7.463558222325029 0.0 46 1.906449263665746E-4 0.0 0.0 7.6724415133140065 0.0 47 1.906449263665746E-4 0.0 0.0 7.9045199370109165 0.0 48 1.906449263665746E-4 0.0 0.0 8.11969451056999 0.0 49 1.906449263665746E-4 0.0 0.0 8.337792306333352 0.0 50 1.906449263665746E-4 0.0 0.0 8.566502669664452 0.0 51 1.906449263665746E-4 0.0 0.0 8.7903833615276 0.0 52 2.5419323515543283E-4 0.0 0.0 9.068852050640377 0.0 53 2.5419323515543283E-4 0.0 0.0 9.30182015066033 0.0 54 2.5419323515543283E-4 0.0 0.0 9.540316953544915 0.0 55 2.5419323515543283E-4 0.0 0.0 9.785422780543541 0.0 56 2.5419323515543283E-4 0.0 0.0 10.025762484383003 0.0 57 2.5419323515543283E-4 0.0 0.0 10.264322835576376 0.0 58 2.5419323515543283E-4 0.0 0.0 10.500150609491829 0.0 59 2.5419323515543283E-4 0.0 0.0 10.749387076561732 0.0 60 3.812898527331492E-4 0.0 0.0 11.01660771501888 0.0 61 3.812898527331492E-4 0.0 0.0 11.278045457376242 0.0 62 3.812898527331492E-4 0.0 0.0 11.572782513538968 0.0 63 3.812898527331492E-4 0.0 0.0 11.878958265283686 0.0 64 4.4483816152200744E-4 0.0 0.0 12.160667918144695 0.0 65 4.4483816152200744E-4 0.0 0.0 12.430621133879765 0.0 66 4.4483816152200744E-4 0.0 0.0 12.691169199914082 0.0 67 4.4483816152200744E-4 0.0 0.0 12.959088869767909 0.0 68 4.4483816152200744E-4 0.0 0.0 13.267298167393871 0.0 69 4.4483816152200744E-4 0.0 0.0 13.647317053951243 0.0 70 4.4483816152200744E-4 0.0 0.0 13.934047023206572 0.0 71 4.4483816152200744E-4 0.0 0.0 14.20463572202953 0.0 72 5.083864703108657E-4 0.0 0.0 14.488378920771781 0.0 73 5.083864703108657E-4 0.0 0.0 14.759984392535362 0.0 74 5.083864703108657E-4 0.0 0.0 15.064444339942781 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCGAC 35 1.2914825E-9 80.0 9 CGTTTTT 5715 0.0 74.47069 1 TTCGTAG 125 0.0 70.4 1 CGAACGG 120 0.0 70.0 2 CGGGATA 585 0.0 69.05983 6 TTCGCGA 35 1.18176104E-7 68.57143 1 TAGGGAC 2105 0.0 68.21852 5 TTGCGAG 160 0.0 67.5 1 ACGTCGG 30 3.7962363E-6 66.666664 1 TACGGGA 945 0.0 66.031746 4 GGGCGAT 1085 0.0 65.62212 7 ACGGGAC 720 0.0 65.55556 5 GGCACCG 275 0.0 65.454544 8 GCGAACG 80 0.0 65.0 1 CCGACGG 50 3.0013325E-10 64.00001 2 TGGTACG 75 0.0 64.0 1 CCGATCC 1530 0.0 63.790848 80 ACGGGAT 1140 0.0 63.508774 5 GTAGGGA 2860 0.0 63.496502 4 TCGTAGG 265 0.0 63.39623 2 >>END_MODULE