##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547835_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2540484 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.047029621127315 33.0 31.0 34.0 31.0 34.0 2 32.47781210194593 34.0 31.0 34.0 31.0 34.0 3 32.60331968239123 34.0 31.0 34.0 31.0 34.0 4 36.12177836979095 37.0 35.0 37.0 35.0 37.0 5 36.08231226805601 37.0 35.0 37.0 35.0 37.0 6 36.13980682421145 37.0 36.0 37.0 35.0 37.0 7 36.352113612996575 37.0 37.0 37.0 35.0 37.0 8 36.355105562562095 37.0 37.0 37.0 35.0 37.0 9 38.14390368134576 39.0 39.0 39.0 37.0 39.0 10-11 37.735227814857325 39.0 37.5 39.0 35.0 39.0 12-13 37.12969280656756 39.0 35.0 39.0 34.0 39.0 14-15 38.29796999311942 40.0 37.0 41.0 33.5 41.0 16-17 38.45502254688476 40.0 37.0 41.0 34.0 41.0 18-19 38.36770316207463 40.0 36.0 41.0 34.0 41.0 20-21 38.221101569622164 40.0 35.5 41.0 34.0 41.0 22-23 38.021373092686275 40.0 35.0 41.0 34.0 41.0 24-25 38.01167257892591 40.0 35.0 41.0 34.0 41.0 26-27 38.01755452897952 40.0 35.0 41.0 34.0 41.0 28-29 37.94455328197304 40.0 36.0 41.0 34.0 41.0 30-31 37.818901437678804 40.0 35.5 41.0 34.0 41.0 32-33 37.55965949795393 40.0 35.0 41.0 33.0 41.0 34-35 37.324320483813324 40.0 35.0 41.0 33.0 41.0 36-37 37.158248585702566 40.0 35.0 41.0 32.5 41.0 38-39 37.06896599230698 40.0 35.0 41.0 32.0 41.0 40-41 36.96208379977988 40.0 35.0 41.0 32.0 41.0 42-43 36.91669894398075 40.0 35.0 41.0 32.0 41.0 44-45 36.79317051396505 39.0 35.0 41.0 31.5 41.0 46-47 36.68282835081819 39.0 35.0 41.0 31.0 41.0 48-49 36.590827180962364 39.0 35.0 41.0 31.0 41.0 50-51 36.37813404847265 39.0 35.0 40.5 31.0 41.0 52-53 36.20283930148743 38.5 35.0 40.0 31.0 41.0 54-55 36.04571746958454 38.0 35.0 40.0 30.5 41.0 56-57 35.75413818784138 38.0 35.0 40.0 29.5 41.0 58-59 35.508401351868386 37.0 35.0 40.0 29.0 41.0 60-61 35.139212252468425 36.5 34.5 40.0 28.5 41.0 62-63 34.73214001741401 36.0 34.0 39.5 27.5 41.0 64-65 34.2882257868973 35.5 34.0 39.0 26.5 40.5 66-67 33.9266899535679 35.0 34.0 38.5 26.0 40.0 68-69 33.42224709937162 35.0 33.5 38.0 24.5 40.0 70-71 33.078155973428686 35.0 33.0 37.0 24.0 39.5 72-73 32.76542560394003 35.0 33.0 37.0 23.0 39.0 74-75 32.42428745861025 35.0 33.0 36.0 22.5 39.0 76-77 30.45619673259111 33.0 30.0 34.5 19.5 36.0 78-79 31.43711473876631 34.5 31.5 35.0 20.0 37.0 80-81 31.5310745905111 35.0 32.0 35.0 19.5 37.0 82-83 31.28813663065778 35.0 32.0 35.0 18.5 36.0 84-85 31.026377847685715 34.0 32.0 35.0 17.5 36.0 86 30.608883582813355 34.0 31.0 35.0 15.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 16.0 10 21.0 11 16.0 12 38.0 13 84.0 14 228.0 15 751.0 16 1825.0 17 4096.0 18 8769.0 19 14374.0 20 17511.0 21 17536.0 22 15654.0 23 14283.0 24 14920.0 25 17080.0 26 20597.0 27 25510.0 28 32071.0 29 40982.0 30 53032.0 31 66699.0 32 81498.0 33 103573.0 34 242410.0 35 232088.0 36 211644.0 37 388829.0 38 603564.0 39 310018.0 40 760.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.255074229949884 24.16067174601375 30.483010324016995 13.101243700019365 2 30.416212028888985 25.6348790230523 30.82011144333127 13.128797504727446 3 29.223250372763616 25.121748454231557 32.12179254031909 13.533208632685739 4 26.920893813934665 26.85283591630571 31.553869262707423 14.6724010070522 5 23.969487703917835 31.530999604799714 29.794519469518406 14.704993221764044 6 22.064299558666775 41.22521535266508 26.149584094999224 10.560900993668923 7 88.73568973471197 3.4876818747923624 6.0703393526587845 1.7062890378368847 8 89.30798225849877 2.6138720023428608 5.924501000596736 2.1536447385616286 9 84.23875135604082 5.9956685418998905 7.0562932102701685 2.709286891789124 10-11 35.84226470231657 30.672915082322895 20.977518457112897 12.50730175824764 12-13 28.02780887421452 25.814470785881742 29.193708757858737 16.964011582044996 14-15 16.91902015521452 32.37721630996299 34.58598833922984 16.11777519559265 16-17 21.71743651997021 27.468525682507742 31.37843025187326 19.435607545648782 18-19 23.417624358193162 28.87003027769512 29.419827088066686 18.292518276045037 20-21 25.10511776496132 28.01192607392922 29.716246982858387 17.166709178251075 22-23 21.408046655676635 24.75437751231655 31.925530725641256 21.912045106365557 24-25 19.29028090710274 28.45853388566903 33.357206736983976 18.893978470244253 26-27 18.34611042620225 33.10790384824309 29.52882206697621 19.017163658578447 28-29 17.06235898356376 28.235387430111743 34.5817962246564 20.12045736166809 30-31 21.476694991977908 28.354262416138027 30.51351632208666 19.655526269797406 32-33 23.142066629823294 28.19309233988484 29.257672947359637 19.407168082932227 34-35 18.757350961470333 28.38455192002784 30.571792619044245 22.286304499457586 36-37 21.768430739969233 28.43761267537997 30.220639059328853 19.573317525321947 38-39 18.87423813729982 30.50271129438327 28.700672785185816 21.92237778313109 40-41 20.385347831358118 27.022626397174708 29.770409890398835 22.821615881068332 42-43 20.690880162992563 26.498060999400114 29.560036591452654 23.25102224615467 44-45 19.368179449270293 30.13443501317072 28.697386009909927 21.79999952764906 46-47 20.41788100220273 29.147930079465173 28.793017393536037 21.641171524796064 48-49 20.306642356338397 27.100544620631347 30.909562902187144 21.683250120843116 50-51 18.66455368347134 29.530770514594856 29.740120386509027 22.064555415424778 52-53 20.774781498328664 26.319532026180838 30.81269159734917 22.09299487814133 54-55 20.657795916053793 26.59627063189534 30.988465190097635 21.757468261953232 56-57 20.91022812975795 25.718701633232094 30.534968927180806 22.83610130982915 58-59 21.994765564357028 27.369666567472972 29.054365231192165 21.581202636977835 60-61 21.995080464982266 29.416343499900023 27.808382182292824 20.780193852824894 62-63 21.942964411505837 27.057757498177516 29.821404110397857 21.177873979918786 64-65 19.415768806258964 30.537704626362533 29.288651296367146 20.75787527101135 66-67 18.612693486752917 29.359779475092147 26.643033374742764 25.384493663412165 68-69 18.26193355281907 31.28311376887239 27.187240699016407 23.267711979292134 70-71 18.787286202156757 29.603473196446036 29.44472391874934 22.16451668264787 72-73 21.164667834947988 29.474206489786987 28.111414990214463 21.249710685050566 74-75 19.903057842521346 31.12442353504293 26.089123174954064 22.88339544748166 76-77 22.655820701882003 29.22216790186437 27.193853612146345 20.928157784107277 78-79 18.534204505913046 29.770744472313147 29.494871843318045 22.20017917845576 80-81 17.004141730473407 29.21260279537285 29.75877824855421 24.02447722559953 82-83 18.600491087525054 28.432515221508975 30.235951102230914 22.731042588735058 84-85 16.94606224640659 28.00310885642264 29.701466334761406 25.349362562409368 86 18.10076347656588 28.124876991943264 30.35205102649731 23.422308504993534 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 878.0 1 1135.0 2 3731.0 3 4051.5 4 2233.0 5 2620.5 6 3087.5 7 3367.0 8 3489.5 9 3729.5 10 3696.5 11 3739.0 12 4043.0 13 4136.5 14 4119.0 15 4215.0 16 4299.5 17 4394.0 18 4635.0 19 5122.0 20 6381.5 21 7289.0 22 7166.5 23 8604.0 24 11401.5 25 15298.5 26 18604.5 27 20921.0 28 26792.0 29 30993.0 30 38776.5 31 44996.0 32 48249.0 33 54759.5 34 61527.5 35 71006.0 36 75410.0 37 77022.5 38 83603.0 39 92659.0 40 106489.0 41 120536.5 42 129767.0 43 134692.0 44 139464.0 45 144210.5 46 141941.0 47 140555.5 48 140372.0 49 128772.5 50 118215.0 51 104931.5 52 87146.0 53 77136.5 54 66037.0 55 58407.0 56 51945.0 57 47521.0 58 42269.0 59 31381.5 60 22321.5 61 16724.5 62 12024.5 63 8017.5 64 6538.0 65 5104.0 66 3544.5 67 3269.0 68 2877.0 69 1994.0 70 1120.0 71 887.0 72 618.0 73 244.5 74 140.5 75 128.5 76 118.5 77 131.0 78 92.5 79 44.0 80 32.5 81 17.5 82 14.0 83 9.5 84 5.0 85 3.5 86 2.0 87 2.0 88 1.0 89 0.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2540484.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.809359402706956 #Duplication Level Percentage of deduplicated Percentage of total 1 77.79930228367353 13.855557356497819 2 9.51466745655159 3.3890026466193395 3 3.2341850249122435 1.7279629045054472 4 1.6190114069740473 1.1533422409553227 5 0.9207806094646634 0.8199256402499874 6 0.6316301148745123 0.6749356635223963 7 0.42772626232448774 0.5332271512199322 8 0.36809283770929674 0.524439811226172 9 0.2665315102698555 0.42720799126879233 >10 2.667484719727473 10.718379961216339 >50 0.9504572760451879 12.415709134093285 >100 1.5918778033180023 52.033112604544804 >500 0.005576144699395014 0.6688563120104309 >1k 0.0024535036677338063 0.6014860598920267 >5k 0.0 0.0 >10k+ 2.2304578797580055E-4 0.4568545221779289 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11501 0.452709011353742 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.872515630879786E-5 0.0 0.0 0.06813662278526454 0.0 2 7.872515630879786E-5 0.0 0.0 0.23302646267404165 0.0 3 7.872515630879786E-5 0.0 0.0 0.33899052306568356 0.0 4 7.872515630879786E-5 0.0 0.0 0.5705605703480124 0.0 5 7.872515630879786E-5 0.0 0.0 1.0782197408052954 0.0 6 7.872515630879786E-5 0.0 0.0 1.465390059531963 0.0 7 7.872515630879786E-5 0.0 0.0 1.7086507925261485 0.0 8 7.872515630879786E-5 0.0 0.0 2.1925349657781745 0.0 9 7.872515630879786E-5 0.0 0.0 2.328532673301623 0.0 10 7.872515630879786E-5 0.0 0.0 2.6202093774257187 0.0 11 7.872515630879786E-5 0.0 0.0 3.0872070046495077 0.0 12 7.872515630879786E-5 0.0 0.0 3.4789433824420857 0.0 13 7.872515630879786E-5 0.0 0.0 3.6046280944890814 0.0 14 7.872515630879786E-5 0.0 0.0 3.6580824756227552 0.0 15 7.872515630879786E-5 0.0 0.0 3.746372738423072 0.0 16 7.872515630879786E-5 0.0 0.0 3.9373206050500613 0.0 17 7.872515630879786E-5 0.0 0.0 4.191563497349324 0.0 18 7.872515630879786E-5 0.0 0.0 4.505204520083574 0.0 19 7.872515630879786E-5 0.0 0.0 4.699183305228453 0.0 20 7.872515630879786E-5 0.0 0.0 4.9044591503036425 0.0 21 7.872515630879786E-5 0.0 0.0 5.171770418550166 0.0 22 7.872515630879786E-5 0.0 0.0 5.449158506804215 0.0 23 7.872515630879786E-5 0.0 0.0 5.738040467879349 0.0 24 7.872515630879786E-5 0.0 0.0 5.94851217327092 0.0 25 7.872515630879786E-5 0.0 0.0 6.139263227007137 0.0 26 7.872515630879786E-5 0.0 0.0 6.321630051596467 0.0 27 7.872515630879786E-5 0.0 0.0 6.542217939573719 0.0 28 7.872515630879786E-5 0.0 0.0 6.749028925196931 0.0 29 7.872515630879786E-5 0.0 0.0 6.995911015381321 0.0 30 7.872515630879786E-5 0.0 0.0 7.253735902292634 0.0 31 7.872515630879786E-5 0.0 0.0 7.495697670207724 0.0 32 7.872515630879786E-5 0.0 0.0 7.70451614731681 0.0 33 7.872515630879786E-5 0.0 0.0 7.9113271329400225 0.0 34 7.872515630879786E-5 0.0 0.0 8.129513903649856 0.0 35 7.872515630879786E-5 0.0 0.0 8.381276953525392 0.0 36 7.872515630879786E-5 0.0 0.0 8.6063915379904 0.0 37 7.872515630879786E-5 0.0 0.0 8.838985012304741 0.0 38 7.872515630879786E-5 0.0 0.0 9.103462174924148 0.0 39 7.872515630879786E-5 0.0 0.0 9.521689567814636 0.0 40 7.872515630879786E-5 0.0 0.0 9.79482649762801 0.0 41 1.1808773446319677E-4 0.0 0.0 10.040212809842535 0.0 42 1.1808773446319677E-4 0.0 0.0 10.305595311759491 0.0 43 1.1808773446319677E-4 0.0 0.0 10.540550540763098 0.0 44 1.1808773446319677E-4 0.0 0.0 10.7768047348458 0.0 45 1.1808773446319677E-4 0.0 0.0 11.01463343205468 0.0 46 1.1808773446319677E-4 0.0 0.0 11.26305066278709 0.0 47 1.1808773446319677E-4 0.0 0.0 11.544965447528895 0.0 48 1.1808773446319677E-4 0.0 0.0 11.802908422174673 0.0 49 1.1808773446319677E-4 0.0 0.0 12.073644234720629 0.0 50 1.1808773446319677E-4 0.0 0.0 12.34201829257732 0.0 51 1.1808773446319677E-4 0.0 0.0 12.601653858083735 0.0 52 1.1808773446319677E-4 0.0 0.0 12.915294880817985 0.0 53 1.1808773446319677E-4 0.0 0.0 13.179968856328165 0.0 54 1.9681289077199462E-4 0.0 0.0 13.457002681378825 0.0 55 1.9681289077199462E-4 0.0 0.0 13.724628850250582 0.0 56 1.9681289077199462E-4 0.0 0.0 14.008826664525342 0.0 57 1.9681289077199462E-4 0.0 0.0 14.289993560282214 0.0 58 2.3617546892639355E-4 0.0 0.0 14.560847460562632 0.0 59 2.3617546892639355E-4 0.0 0.0 14.836385507643426 0.0 60 2.3617546892639355E-4 0.0 0.0 15.141366763183708 0.0 61 2.755380470807925E-4 0.0 0.0 15.442451123486705 0.0 62 2.755380470807925E-4 0.0 0.0 15.79147910398176 0.0 63 2.755380470807925E-4 0.0 0.0 16.11763742656911 0.0 64 2.755380470807925E-4 0.0 0.0 16.435135981962492 0.0 65 2.755380470807925E-4 0.0 0.0 16.729922329760786 0.0 66 2.755380470807925E-4 0.0 0.0 17.024393776933845 0.0 67 2.755380470807925E-4 0.0 0.0 17.327918617082414 0.0 68 2.755380470807925E-4 0.0 0.0 17.65120347146449 0.0 69 2.755380470807925E-4 0.0 0.0 18.076988479360626 0.0 70 3.1490062523519143E-4 0.0 0.0 18.39059013951672 3.936257815439893E-5 71 3.1490062523519143E-4 0.0 0.0 18.693052190055123 3.936257815439893E-5 72 3.1490062523519143E-4 0.0 0.0 18.992916310435334 3.936257815439893E-5 73 3.1490062523519143E-4 0.0 0.0 19.30356577722985 3.936257815439893E-5 74 3.5426320338959033E-4 0.0 0.0 19.638029603807777 3.936257815439893E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTTCG 90 0.0 75.55556 1 TATAGCG 330 0.0 75.15151 1 CGAACGG 75 0.0 74.666664 2 CGTTTTT 6700 0.0 70.50746 1 TAACGCG 110 0.0 69.090904 1 ATAGGGA 3840 0.0 68.333336 4 ACGGGAT 1485 0.0 68.14815 5 CGTAAGG 485 0.0 67.62887 2 AGGGATT 5360 0.0 66.19403 6 TACGGGA 1345 0.0 66.0223 4 TAGGGAC 3575 0.0 65.79021 5 TAGCGGG 1870 0.0 65.66845 3 CCGTAAG 80 0.0 65.00001 1 TAGGGAT 4460 0.0 63.8565 5 AACGGGA 1050 0.0 63.61905 4 TTAGCGG 750 0.0 62.933334 2 AGTACGG 325 0.0 62.76923 2 TAGGGTA 2175 0.0 62.16092 5 CGGGATT 1770 0.0 61.920902 6 CGGGATA 795 0.0 61.88679 6 >>END_MODULE