##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547828_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2844177 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.0264927253121 33.0 31.0 34.0 31.0 34.0 2 32.44768029556529 34.0 31.0 34.0 31.0 34.0 3 32.55195474824527 34.0 31.0 34.0 31.0 34.0 4 36.10044135790424 37.0 35.0 37.0 35.0 37.0 5 36.058945346931644 37.0 35.0 37.0 35.0 37.0 6 36.11720121497361 37.0 36.0 37.0 35.0 37.0 7 36.33941980404173 37.0 37.0 37.0 35.0 37.0 8 36.33774902194906 37.0 37.0 37.0 35.0 37.0 9 38.13745100955391 39.0 39.0 39.0 37.0 39.0 10-11 37.69230624535675 39.0 37.5 39.0 35.0 39.0 12-13 37.18331102459516 39.0 37.0 39.0 34.0 39.0 14-15 38.43412804477359 40.0 37.0 41.0 34.0 41.0 16-17 38.52855694283443 40.0 37.0 41.0 34.0 41.0 18-19 38.3600157444491 40.0 37.0 41.0 34.0 41.0 20-21 38.147817101396996 40.0 35.5 41.0 34.0 41.0 22-23 37.95404312038245 40.0 35.0 41.0 34.0 41.0 24-25 37.931832828969505 40.0 35.0 41.0 34.0 41.0 26-27 37.9205924947709 40.0 35.0 41.0 34.0 41.0 28-29 37.82644434576329 40.0 35.0 41.0 34.0 41.0 30-31 37.65333240512106 40.0 35.5 41.0 33.0 41.0 32-33 37.27116420672834 40.0 35.0 41.0 32.5 41.0 34-35 36.910689102682426 40.0 35.0 41.0 31.5 41.0 36-37 36.70567689704262 40.0 35.0 41.0 31.0 41.0 38-39 36.593768601602505 40.0 35.0 41.0 31.0 41.0 40-41 36.50398533565246 40.0 35.0 41.0 30.0 41.0 42-43 36.448716799270926 39.5 35.0 41.0 30.0 41.0 44-45 36.32536986973736 39.0 35.0 41.0 30.0 41.0 46-47 36.18754089495837 39.0 35.0 41.0 30.0 41.0 48-49 36.073093200598976 39.0 35.0 41.0 29.5 41.0 50-51 35.84925217382744 38.5 35.0 40.5 29.0 41.0 52-53 35.65914480709182 38.0 35.0 40.0 28.0 41.0 54-55 35.47582991494552 38.0 35.0 40.0 28.0 41.0 56-57 35.20396796683188 37.5 35.0 40.0 27.5 41.0 58-59 34.94385669386962 37.0 34.5 40.0 27.0 41.0 60-61 34.59542848423287 36.5 34.0 40.0 26.0 41.0 62-63 34.22762560136026 36.0 34.0 39.0 26.0 41.0 64-65 33.863704860843754 35.0 34.0 39.0 25.0 40.0 66-67 33.528385539999796 35.0 34.0 38.5 24.5 40.0 68-69 33.04357042476611 35.0 33.0 37.5 22.5 40.0 70-71 32.72757444420653 35.0 33.0 37.0 22.0 39.0 72-73 32.45053824006031 35.0 33.0 36.5 21.0 39.0 74-75 32.133719350096705 35.0 33.0 36.0 20.0 38.5 76-77 30.18505036782169 33.0 30.0 34.5 18.5 36.0 78-79 31.219637877670763 34.0 31.5 35.0 19.0 37.0 80-81 31.318495649180765 35.0 32.0 35.0 18.5 36.5 82-83 31.090303451578436 34.5 32.0 35.0 17.5 36.0 84-85 30.850653106329176 34.0 31.5 35.0 16.0 36.0 86 30.424999920891 34.0 31.0 35.0 15.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 7.0 11 13.0 12 37.0 13 122.0 14 340.0 15 1133.0 16 3061.0 17 7608.0 18 17383.0 19 27836.0 20 30954.0 21 28000.0 22 23457.0 23 19819.0 24 19047.0 25 20276.0 26 23309.0 27 28374.0 28 34954.0 29 43743.0 30 55120.0 31 68506.0 32 83580.0 33 108738.0 34 246584.0 35 245639.0 36 245935.0 37 463380.0 38 690642.0 39 305921.0 40 654.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.821120837416238 23.767297182981228 29.957734697946016 14.45384728165652 2 31.406554514715506 25.02347779340034 30.421243122351388 13.148724569532769 3 28.580710694165656 25.140981028958464 33.5645777319766 12.71373054489928 4 26.17516420391558 26.481052339569583 33.03036344081258 14.313420015702258 5 23.871369468215235 30.490085532651452 31.696023137800495 13.942521861332821 6 21.347897827737164 40.76898167730067 27.230935346147582 10.652185148814578 7 86.94008846847436 3.496617826527674 8.010788358108515 1.5525053468894519 8 88.03762916302325 2.8867050116782464 7.534692812718759 1.5409730125797374 9 83.89375907336287 5.359652370439673 8.271848060089088 2.4747404961083648 10-11 35.76027441330128 28.825895856692462 22.08656493600785 13.327264793998406 12-13 26.533809253080943 24.640783608052523 30.456894911955196 18.368512226911335 14-15 18.075580387577848 30.63181370217114 33.29052657411968 18.00207933613133 16-17 22.22249177881686 27.68424749936449 31.979567375729427 18.11369334608922 18-19 23.548270729986214 28.829904046056203 29.767134745833328 17.85469047812425 20-21 25.828121808171574 27.708384534436497 29.75586610819228 16.707627549199646 22-23 22.128510286103854 25.083055660741227 32.0678178608434 20.72061619231152 24-25 20.120618372203978 27.98452768586484 33.301847951094466 18.593005990836716 26-27 18.92394531001411 31.834059553958845 30.248486644818517 18.99350849120853 28-29 18.195843648268024 28.06987750762347 34.671031373926446 19.06324747018206 30-31 21.59223916092423 28.075503036555038 31.11778908274696 19.21446871977377 32-33 23.24987157972236 27.977372716255 29.578503728846695 19.194251975175945 34-35 19.9032268385547 28.569653013859547 30.43826034736938 21.088859800216373 36-37 21.960975002610596 29.257725521301943 29.620185382274027 19.16111409381343 38-39 20.667226406795358 30.200423532009435 28.78224526813908 20.35010479305613 40-41 20.784729642353483 27.774502079160335 29.116788441788255 22.323979836697927 42-43 20.862010346050898 27.51899758699968 29.042127124999606 22.576864941949815 44-45 20.392507217377823 29.781743541277493 28.807208552772913 21.018540688571775 46-47 20.935652035720704 29.260801982436398 29.081523407298494 20.72202257454441 48-49 21.07905028414195 27.58820917263588 30.639179629115908 20.69356091410626 50-51 19.32884275486371 29.556423527790287 30.1382438575377 20.976489859808304 52-53 21.496148094861887 26.374677103429217 30.538377182573377 21.590797619135518 54-55 20.91481999889599 27.35840631578133 30.624219238113522 21.102554447209158 56-57 21.42672555189076 27.02185904745028 29.41745538340265 22.13396001725631 58-59 21.959902636158017 28.024767797503458 29.170283705971883 20.845045860366636 60-61 22.563662528738544 29.477630963192514 27.515393732527897 20.443312775541045 62-63 21.80186043273678 27.490430447894067 29.68489654476497 21.02281257460418 64-65 20.744102775600815 29.738057793168288 29.37735590998732 20.14048352124358 66-67 19.634871528741 29.765851422045813 27.570980990282955 23.028296058930227 68-69 19.31706430366324 30.776407375490344 27.70372589329004 22.202802427556374 70-71 19.67319544458731 29.657542410335218 29.20616403268854 21.463098112388927 72-73 21.32555393001209 29.791078403348315 28.164069957671412 20.71929770896818 74-75 20.448112054910787 30.421981473023656 27.31969564482098 21.81021082724458 76-77 22.286148154633135 28.978330110960044 27.90519014815182 20.830331586255006 78-79 19.393589076910473 29.31642439974727 29.37740864932105 21.912577874021203 80-81 18.40678340342391 28.955458819897633 29.495650235551444 23.14210754112701 82-83 19.501124578392975 28.83032596072607 29.47615426184798 22.192395199032973 84-85 18.063503080152888 28.539925609411792 28.892154039639586 24.504417270795734 86 19.057112127691067 28.007258338703956 29.893709146793608 23.04192038681137 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 920.0 1 1131.5 2 6265.0 3 7313.0 4 3736.0 5 4602.5 6 5538.0 7 5904.0 8 6182.0 9 6593.5 10 6661.5 11 6686.5 12 6864.5 13 7036.5 14 7121.0 15 7209.0 16 7545.5 17 7873.5 18 8246.5 19 9007.0 20 9569.5 21 9665.0 22 10335.5 23 12386.0 24 14003.5 25 16400.0 26 21340.0 27 25242.5 28 28471.0 29 30578.0 30 36069.5 31 44089.0 32 49634.0 33 56718.0 34 63986.0 35 73752.5 36 80318.0 37 81618.5 38 90383.5 39 99013.0 40 107080.0 41 118748.0 42 129709.0 43 135904.0 44 140400.0 45 146918.0 46 153314.0 47 160873.5 48 161420.5 49 147714.5 50 136647.0 51 123706.5 52 106978.5 53 97667.5 54 85339.0 55 76071.5 56 65697.0 57 57785.0 58 51523.5 59 37761.5 60 26373.5 61 19910.0 62 15555.0 63 10693.5 64 7611.0 65 6347.5 66 4278.5 67 2957.0 68 2000.0 69 1183.5 70 738.5 71 669.0 72 456.5 73 223.5 74 213.5 75 153.0 76 71.0 77 37.5 78 17.5 79 20.0 80 23.0 81 15.5 82 11.5 83 10.5 84 5.5 85 6.5 86 5.0 87 3.5 88 1.5 89 1.0 90 0.5 91 0.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2844177.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.332078665796143 #Duplication Level Percentage of deduplicated Percentage of total 1 78.920564591569 15.25698563033258 2 8.279706240206606 3.201278647307146 3 2.8191075085325723 1.634976243668648 4 1.438752994865057 1.1125634430952431 5 0.8908320880303278 0.8610818001908864 6 0.6076981039715382 0.7048840530619764 7 0.46105700880577777 0.6239233254554973 8 0.35302748968572084 0.5459804161434313 9 0.3011626872919226 0.523989068573701 >10 3.3579963586591335 15.389458679812154 >50 1.2401706398772505 17.379677531474506 >100 1.3240200803577975 40.94818955523273 >500 0.00442815611043344 0.595921024236262 >1k 0.0012915455322097533 0.3945698431855828 >5k 0.0 0.0 >10k+ 1.8450650460139336E-4 0.8265207382296441 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23172 0.8147172275143213 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.515955582229939E-5 0.0 0.0 0.02633450731090224 0.0 2 3.515955582229939E-5 0.0 0.0 0.09036005846330943 0.0 3 3.515955582229939E-5 0.0 0.0 0.1370871081511453 0.0 4 3.515955582229939E-5 0.0 0.0 0.24921093166845804 0.0 5 3.515955582229939E-5 0.0 0.0 0.5240883390871947 0.0 6 3.515955582229939E-5 0.0 0.0 0.7600441182106458 0.0 7 3.515955582229939E-5 0.0 0.0 0.9227273830004251 0.0 8 3.515955582229939E-5 0.0 0.0 1.2063595198189143 0.0 9 3.515955582229939E-5 0.0 0.0 1.2971766525079136 0.0 10 3.515955582229939E-5 0.0 0.0 1.5260653609110826 0.0 11 3.515955582229939E-5 0.0 0.0 1.7956336754006519 0.0 12 3.515955582229939E-5 0.0 0.0 2.022412810454483 0.0 13 3.515955582229939E-5 0.0 0.0 2.106655106204712 0.0 14 3.515955582229939E-5 0.0 0.0 2.1392128548961615 0.0 15 3.515955582229939E-5 0.0 0.0 2.190088732171029 0.0 16 7.031911164459877E-5 0.0 0.0 2.3040760121469233 0.0 17 7.031911164459877E-5 0.0 0.0 2.4563872079691245 0.0 18 7.031911164459877E-5 0.0 0.0 2.6460026925187847 0.0 19 7.031911164459877E-5 0.0 0.0 2.783511715339798 1.0547866746689815E-4 20 7.031911164459877E-5 0.0 0.0 2.921055897716633 1.0547866746689815E-4 21 7.031911164459877E-5 0.0 0.0 3.1185119632146665 1.0547866746689815E-4 22 1.0547866746689815E-4 0.0 0.0 3.3274300439107694 1.0547866746689815E-4 23 1.0547866746689815E-4 0.0 0.0 3.554842050969402 1.0547866746689815E-4 24 1.0547866746689815E-4 0.0 0.0 3.7259987687123552 1.0547866746689815E-4 25 1.0547866746689815E-4 0.0 0.0 3.879575708544159 1.0547866746689815E-4 26 1.0547866746689815E-4 0.0 0.0 4.018420794486419 1.0547866746689815E-4 27 1.0547866746689815E-4 0.0 0.0 4.167251194282213 1.0547866746689815E-4 28 1.0547866746689815E-4 0.0 0.0 4.3342942439939565 1.0547866746689815E-4 29 1.0547866746689815E-4 0.0 0.0 4.521096964077834 1.0547866746689815E-4 30 1.0547866746689815E-4 0.0 0.0 4.725655259851972 1.0547866746689815E-4 31 1.0547866746689815E-4 0.0 0.0 4.932569245866203 1.0547866746689815E-4 32 1.0547866746689815E-4 0.0 0.0 5.113465160571933 1.0547866746689815E-4 33 1.0547866746689815E-4 0.0 0.0 5.304311229575375 1.0547866746689815E-4 34 1.0547866746689815E-4 0.0 0.0 5.500009317282293 1.0547866746689815E-4 35 1.0547866746689815E-4 0.0 0.0 5.715924149587034 1.0547866746689815E-4 36 1.0547866746689815E-4 0.0 0.0 5.913520853308356 1.0547866746689815E-4 37 1.0547866746689815E-4 0.0 0.0 6.1227553700068595 1.0547866746689815E-4 38 1.0547866746689815E-4 0.0 0.0 6.355546789106304 1.0547866746689815E-4 39 1.0547866746689815E-4 0.0 0.0 6.680632042239284 1.0547866746689815E-4 40 1.0547866746689815E-4 0.0 0.0 6.92629185876969 1.0547866746689815E-4 41 1.0547866746689815E-4 0.0 0.0 7.162106999669851 1.0547866746689815E-4 42 1.0547866746689815E-4 0.0 0.0 7.395918045888143 1.0547866746689815E-4 43 1.0547866746689815E-4 0.0 0.0 7.6254044667402905 1.0547866746689815E-4 44 1.0547866746689815E-4 0.0 0.0 7.852992271578035 1.0547866746689815E-4 45 1.0547866746689815E-4 0.0 0.0 8.082373213762716 1.0547866746689815E-4 46 1.0547866746689815E-4 0.0 0.0 8.331127071205485 1.0547866746689815E-4 47 1.0547866746689815E-4 0.0 0.0 8.582588214446568 1.0547866746689815E-4 48 1.0547866746689815E-4 0.0 0.0 8.834365793690056 1.0547866746689815E-4 49 1.0547866746689815E-4 0.0 0.0 9.090538317411328 1.0547866746689815E-4 50 1.0547866746689815E-4 0.0 0.0 9.360423067903298 1.0547866746689815E-4 51 1.4063822328919755E-4 3.515955582229939E-5 0.0 9.622010163221207 1.0547866746689815E-4 52 1.4063822328919755E-4 3.515955582229939E-5 0.0 9.91963580325697 1.0547866746689815E-4 53 1.4063822328919755E-4 3.515955582229939E-5 0.0 10.190680819091076 1.0547866746689815E-4 54 1.4063822328919755E-4 3.515955582229939E-5 0.0 10.469601575429378 1.0547866746689815E-4 55 1.4063822328919755E-4 3.515955582229939E-5 0.0 10.739310528142235 1.0547866746689815E-4 56 1.4063822328919755E-4 3.515955582229939E-5 0.0 11.02712665210358 1.0547866746689815E-4 57 1.4063822328919755E-4 3.515955582229939E-5 0.0 11.296941083483905 1.0547866746689815E-4 58 1.4063822328919755E-4 3.515955582229939E-5 0.0 11.570447268225571 1.0547866746689815E-4 59 1.4063822328919755E-4 3.515955582229939E-5 0.0 11.855802223279353 1.0547866746689815E-4 60 1.4063822328919755E-4 3.515955582229939E-5 0.0 12.15666254245077 1.0547866746689815E-4 61 1.7579777911149694E-4 3.515955582229939E-5 0.0 12.464836049233222 1.0547866746689815E-4 62 2.109573349337963E-4 3.515955582229939E-5 0.0 12.782924550757565 1.0547866746689815E-4 63 2.109573349337963E-4 3.515955582229939E-5 0.0 13.110752249244685 1.0547866746689815E-4 64 2.109573349337963E-4 3.515955582229939E-5 0.0 13.426168624526532 1.0547866746689815E-4 65 2.109573349337963E-4 3.515955582229939E-5 0.0 13.734306971753165 1.0547866746689815E-4 66 2.109573349337963E-4 3.515955582229939E-5 0.0 14.03822617228112 1.0547866746689815E-4 67 2.109573349337963E-4 3.515955582229939E-5 0.0 14.33026144294114 1.0547866746689815E-4 68 2.109573349337963E-4 3.515955582229939E-5 0.0 14.666773551716366 1.0547866746689815E-4 69 2.109573349337963E-4 3.515955582229939E-5 0.0 15.057431376457934 1.0547866746689815E-4 70 2.812764465783951E-4 3.515955582229939E-5 0.0 15.384169128714563 1.0547866746689815E-4 71 3.1643600240069446E-4 3.515955582229939E-5 0.0 15.688510243912386 1.0547866746689815E-4 72 3.1643600240069446E-4 3.515955582229939E-5 0.0 15.996086038245862 1.0547866746689815E-4 73 3.1643600240069446E-4 3.515955582229939E-5 0.0 16.308970925508504 1.0547866746689815E-4 74 3.1643600240069446E-4 3.515955582229939E-5 0.0 16.64361957782515 1.0547866746689815E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 13840 0.0 74.24855 1 CGAACGG 115 0.0 66.08696 2 CCGATCC 1875 0.0 65.28 80 GGGCGAT 2130 0.0 64.22536 7 GCTAGCG 95 0.0 63.157894 1 GCGAACG 90 0.0 62.222225 1 TAGGGAT 4990 0.0 61.80361 5 ATACGCG 175 0.0 61.714287 1 AGGGATT 5960 0.0 61.677853 6 TAGGGCG 500 0.0 61.6 5 TAGGGTA 2015 0.0 61.538464 5 TTTCGCG 85 0.0 61.176468 1 TAGGGAC 3665 0.0 61.118694 5 TACGGGA 1200 0.0 61.0 4 TAACGGG 765 0.0 60.6536 3 TTAGGGA 4420 0.0 60.542984 4 GAGGGAT 4830 0.0 60.041405 5 GTAGGGA 4820 0.0 60.0 4 AGCGGGA 2355 0.0 58.93843 4 TTACGGG 905 0.0 58.78453 3 >>END_MODULE