##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547825_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2103828 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.1205431242478 33.0 31.0 34.0 31.0 34.0 2 32.56017459602211 34.0 31.0 34.0 31.0 34.0 3 32.67986641493506 34.0 31.0 34.0 31.0 34.0 4 36.19758601938942 37.0 35.0 37.0 35.0 37.0 5 36.16519363750268 37.0 35.0 37.0 35.0 37.0 6 36.22413952091141 37.0 37.0 37.0 35.0 37.0 7 36.40793924218139 37.0 37.0 37.0 35.0 37.0 8 36.41674937304761 37.0 37.0 37.0 35.0 37.0 9 38.23196430506676 39.0 39.0 39.0 37.0 39.0 10-11 37.8186679234234 39.0 37.5 39.0 35.0 39.0 12-13 37.27099363636191 39.0 37.0 39.0 34.5 39.0 14-15 38.55350461159372 40.0 38.0 41.0 34.5 41.0 16-17 38.65660714659183 40.0 37.5 41.0 35.0 41.0 18-19 38.522054321931265 40.0 37.0 41.0 35.0 41.0 20-21 38.353671735522106 40.0 36.0 41.0 34.0 41.0 22-23 38.159382563593596 40.0 35.5 41.0 34.0 41.0 24-25 38.147548896582805 40.0 35.0 41.0 34.0 41.0 26-27 38.142779495281935 40.0 35.0 41.0 34.0 41.0 28-29 38.06193899881549 40.0 36.0 41.0 34.0 41.0 30-31 37.92810462642383 40.0 36.0 41.0 34.0 41.0 32-33 37.64993288424719 40.0 35.0 41.0 33.5 41.0 34-35 37.374029625996045 40.0 35.0 41.0 33.0 41.0 36-37 37.201042575723875 40.0 35.0 41.0 33.0 41.0 38-39 37.116375720828884 40.0 35.0 41.0 33.0 41.0 40-41 37.01862462140441 40.0 35.0 41.0 32.0 41.0 42-43 36.9618336194784 40.0 35.0 41.0 32.0 41.0 44-45 36.837582967809155 40.0 35.0 41.0 32.0 41.0 46-47 36.71946613506427 39.0 35.0 41.0 31.5 41.0 48-49 36.63890893171875 39.0 35.0 41.0 31.0 41.0 50-51 36.41878661183328 39.0 35.0 41.0 31.0 41.0 52-53 36.242614652908884 38.5 35.0 40.0 31.0 41.0 54-55 36.06986645296098 38.0 35.0 40.0 31.0 41.0 56-57 35.80323415222157 38.0 35.0 40.0 30.0 41.0 58-59 35.57597816931802 37.0 35.0 40.0 29.5 41.0 60-61 35.24203499525626 37.0 35.0 40.0 29.0 41.0 62-63 34.880370210872755 36.0 34.0 39.5 28.0 41.0 64-65 34.532671159429384 36.0 34.0 39.0 28.0 40.5 66-67 34.22282334867679 35.0 34.0 39.0 27.5 40.0 68-69 33.767961782046825 35.0 34.0 38.0 26.0 40.0 70-71 33.45367563317914 35.0 34.0 37.0 26.0 39.5 72-73 33.15865959574642 35.0 33.5 37.0 25.5 39.0 74-75 32.839549858638634 35.0 33.0 36.0 25.0 39.0 76-77 30.84726008970315 33.5 30.0 34.5 21.5 36.0 78-79 31.87251286702145 34.5 32.0 35.0 23.0 37.0 80-81 31.98816181741093 35.0 33.0 35.0 23.0 37.0 82-83 31.76905740393226 35.0 33.0 35.0 22.0 36.0 84-85 31.543360008517805 35.0 32.0 35.0 20.0 36.0 86 31.121004663879365 34.0 32.0 35.0 19.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 13.0 11 13.0 12 29.0 13 49.0 14 213.0 15 530.0 16 1517.0 17 3570.0 18 8474.0 19 14339.0 20 17102.0 21 16448.0 22 13813.0 23 11625.0 24 10873.0 25 11648.0 26 13709.0 27 16858.0 28 20907.0 29 27098.0 30 35012.0 31 45018.0 32 57081.0 33 77801.0 34 193699.0 35 187795.0 36 177162.0 37 341325.0 38 537009.0 39 262503.0 40 588.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.301893500799494 24.155254136745018 31.316628545679592 13.226223816775896 2 30.342499481896805 25.94717819137306 31.0640888893959 12.646233437334232 3 28.51811079612972 25.253680433951825 33.104845072886185 13.123363697032268 4 26.735503092458128 27.39525284386366 31.821565261038447 14.04767880263976 5 23.434757974511225 32.43402027161916 30.24776740303865 13.883454350830963 6 21.96206153735001 41.23203037510671 25.949935070737723 10.855973016805557 7 89.09654211275827 3.579094868972178 5.920826227239108 1.4035367910304455 8 90.35748169527167 2.4075162037961277 5.936131660953272 1.2988704399789335 9 86.05784313166286 5.629832857058656 6.338018126957147 1.974305884321342 10-11 36.52354184847811 30.255847911521283 20.715856999716706 12.504753240283902 12-13 26.885230161401026 25.264731717611895 30.170384651216736 17.679653469770344 14-15 17.226622138311686 31.769493513728307 33.77526584872908 17.228618499230926 16-17 21.73438132775113 27.174559897482116 32.03451042575724 19.05654834900952 18-19 23.042259158068052 29.000231958125855 30.025529653564835 17.931979230241254 20-21 26.31721794747479 27.646746787284894 29.488223371872607 16.547811893367708 22-23 21.666409991691335 25.19654648573933 31.881527387219865 21.255516135349467 24-25 19.655955715010922 28.307708614962817 33.0895158729706 18.946819797055653 26-27 18.878610798981665 33.26291407852733 29.37497742210865 18.48349770038235 28-29 17.747458442420196 28.88270809210639 34.529319887367215 18.840513578106194 30-31 20.917418153955552 28.797339896607514 30.86908720674884 19.41615474268809 32-33 23.198117906977185 28.473549168468143 29.478978319520415 18.84935460503425 34-35 20.082202537469794 28.408976399211344 30.588265770775934 20.92055529254293 36-37 21.302882174778546 29.828626674804216 29.791979192215333 19.076511958201905 38-39 19.873701652416454 30.824929604511397 29.003464161518906 20.297904581553244 40-41 20.382203297988237 28.02294198955428 29.269027696180487 22.325827016276996 42-43 20.41927857220267 27.630657068923885 28.80708403918952 23.14298031968393 44-45 19.786455927005438 30.529895980089627 28.718150913477718 20.965497179427214 46-47 20.86634458710503 29.597001275769692 28.908161693826685 20.628492443298597 48-49 20.470138243240417 27.686911667683862 30.890761982443433 20.952188106632292 50-51 19.299629057128247 29.83297588966398 29.970605962084353 20.89678909112342 52-53 21.17338014324365 26.87641290067439 30.60830067857258 21.341906277509377 54-55 21.05811406635904 27.890469182841944 30.430767153968862 20.62064959683016 56-57 21.44849769087587 26.95904798301002 29.813962928528376 21.778491397585732 58-59 22.055629072338615 27.906131109577398 29.32380879045245 20.714431027631537 60-61 22.91843724867242 29.35884017134481 28.01666771237953 19.706054867603246 62-63 21.90045954327065 27.592464783242736 29.975882058799485 20.531193614687133 64-65 20.072553459693474 30.172333479733133 29.918724344385566 19.836388716187827 66-67 18.566679405350627 29.67074779877443 27.810947472892273 23.95162532298268 68-69 19.29979542053818 31.19501689301597 26.986878204872262 22.51830948157359 70-71 19.297133605979198 30.148781174126405 29.111719208984766 21.442366010909637 72-73 21.50477605583726 29.814176824341153 27.92336160560654 20.75768551421504 74-75 20.482496667978562 31.36865276058689 26.72956154210325 21.419289029331296 76-77 22.56170656536561 29.407798546268992 27.46001574273182 20.570479145633577 78-79 19.141702648695617 29.73767342197176 29.685150116834645 21.43547381249798 80-81 18.032938053871327 29.24611707801208 29.43886097152429 23.282083896592308 82-83 19.063987170053824 29.165240694581495 29.891131784537517 21.87964035082716 84-85 17.92601391368496 28.617691180077458 28.878549006857973 24.577745899379607 86 18.733708268926925 28.68390381723221 29.906817477474394 22.67557043636647 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 603.0 1 844.5 2 3595.5 3 4011.0 4 2028.5 5 2573.0 6 3215.0 7 3424.0 8 3640.0 9 3888.5 10 3918.5 11 3894.0 12 3854.0 13 4017.5 14 4199.0 15 4138.0 16 4290.0 17 4540.5 18 4628.5 19 5223.5 20 5917.0 21 6066.0 22 6862.5 23 8315.5 24 10360.0 25 13126.0 26 16512.5 27 20478.0 28 25996.5 29 29558.0 30 30451.5 31 34900.0 32 40698.5 33 46755.0 34 52910.5 35 60090.5 36 64928.0 37 64588.5 38 69869.5 39 80396.0 40 89321.0 41 96089.0 42 104275.5 43 109713.0 44 111469.0 45 112590.5 46 112819.0 47 113962.0 48 111970.5 49 103732.5 50 97766.0 51 87591.0 52 71736.0 53 62972.0 54 55619.5 55 48799.0 56 43094.5 57 39942.0 58 37000.0 59 28658.0 60 18905.5 61 12923.5 62 9800.5 63 7195.5 64 6084.0 65 4842.0 66 2807.0 67 1645.5 68 1179.5 69 799.5 70 468.0 71 419.0 72 289.5 73 176.5 74 124.5 75 46.0 76 32.0 77 19.0 78 8.5 79 7.0 80 6.5 81 6.5 82 4.5 83 4.0 84 3.5 85 1.5 86 2.0 87 2.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.5 95 0.5 96 0.0 97 0.0 98 2.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2103828.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.127958191306075 #Duplication Level Percentage of deduplicated Percentage of total 1 79.46609729034657 14.405580893056635 2 8.047961369752684 2.91786214472246 3 2.5675003865655186 1.396306189914657 4 1.2859547665057451 0.9324693697250764 5 0.7323057203249643 0.6637603740652616 6 0.5356129888004825 0.5825741920617381 7 0.390925434576823 0.4960675953748763 8 0.31180231662137015 0.4521871487731662 9 0.2525101798851608 0.41197445854536335 >10 3.497164347207381 15.38089435451027 >50 1.3889485818492997 18.36002763125784 >100 1.5184681071535042 42.87670211823317 >500 0.003693285874894983 0.43174302560838546 >1k 7.914184017632106E-4 0.17335716302950788 >5k 0.0 0.0 >10k+ 2.638061339210702E-4 0.5184933411216344 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10842 0.5153463115806045 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.029137362940316415 0.0 2 0.0 0.0 0.0 0.08622377874997386 0.0 3 0.0 0.0 0.0 0.1333759223662771 0.0 4 0.0 0.0 0.0 0.22121580281277747 0.0 5 0.0 0.0 0.0 0.45046458170534853 0.0 6 0.0 0.0 0.0 0.6381700405166202 0.0 7 0.0 0.0 0.0 0.7655568801251813 0.0 8 0.0 0.0 0.0 1.0109191435801785 0.0 9 0.0 0.0 0.0 1.0874938445538322 0.0 10 0.0 0.0 0.0 1.2604167260821701 0.0 11 0.0 0.0 0.0 1.5973739298079501 0.0 12 0.0 0.0 0.0 1.8235806349188242 0.0 13 0.0 0.0 0.0 1.9101846728915102 0.0 14 0.0 0.0 0.0 1.9386090497892414 0.0 15 0.0 0.0 0.0 1.9850482073629594 0.0 16 0.0 0.0 0.0 2.0962264976034164 0.0 17 0.0 0.0 0.0 2.2497086263705968 0.0 18 0.0 0.0 0.0 2.426956956557285 0.0 19 0.0 0.0 0.0 2.5586217124213575 0.0 20 0.0 0.0 0.0 2.69223529680183 0.0 21 0.0 0.0 0.0 2.8610228592831732 0.0 22 0.0 0.0 0.0 3.0441652074218997 0.0 23 0.0 0.0 0.0 3.2453698686394516 0.0 24 0.0 0.0 0.0 3.3855904570145468 0.0 25 0.0 0.0 0.0 3.5090321071874695 0.0 26 0.0 0.0 0.0 3.630049604815603 0.0 27 0.0 0.0 0.0 3.7528733337516185 0.0 28 0.0 0.0 0.0 3.8926185980983234 0.0 29 0.0 0.0 0.0 4.044056833543427 0.0 30 0.0 0.0 0.0 4.223919445886261 0.0 31 0.0 0.0 0.0 4.399123882750871 0.0 32 0.0 0.0 0.0 4.553128867949281 0.0 33 0.0 0.0 0.0 4.712267352654305 0.0 34 0.0 0.0 0.0 4.878440632979502 0.0 35 0.0 0.0 0.0 5.064767652108443 0.0 36 0.0 0.0 0.0 5.24396481081153 0.0 37 4.753240283901536E-5 0.0 0.0 5.429246117078012 0.0 38 4.753240283901536E-5 0.0 0.0 5.618234950765937 0.0 39 4.753240283901536E-5 0.0 0.0 5.851856710719698 0.0 40 4.753240283901536E-5 0.0 0.0 6.054297214411064 0.0 41 4.753240283901536E-5 0.0 0.0 6.253077723083826 0.0 42 4.753240283901536E-5 0.0 0.0 6.466926003456557 0.0 43 4.753240283901536E-5 0.0 0.0 6.656247563964355 0.0 44 4.753240283901536E-5 0.0 0.0 6.850655091575927 0.0 45 4.753240283901536E-5 0.0 0.0 7.0470114477039 0.0 46 9.506480567803072E-5 0.0 0.0 7.260574533659596 0.0 47 9.506480567803072E-5 0.0 0.0 7.481980466083729 0.0 48 9.506480567803072E-5 0.0 0.0 7.687795770376666 0.0 49 9.506480567803072E-5 0.0 0.0 7.909867156440545 0.0 50 9.506480567803072E-5 0.0 0.0 8.131082959253323 0.0 51 9.506480567803072E-5 0.0 0.0 8.362755890690684 0.0 52 9.506480567803072E-5 0.0 0.0 8.605361274781018 0.0 53 9.506480567803072E-5 0.0 0.0 8.833659405616809 0.0 54 9.506480567803072E-5 0.0 0.0 9.075979595290109 0.0 55 9.506480567803072E-5 0.0 0.0 9.305038244571325 0.0 56 1.4259720851704608E-4 0.0 0.0 9.545076878908352 0.0 57 1.9012961135606143E-4 0.0 0.0 9.784925383634024 0.0 58 1.9012961135606143E-4 0.0 0.0 10.033900109704787 0.0 59 1.9012961135606143E-4 0.0 0.0 10.292666510760386 0.0 60 1.9012961135606143E-4 0.0 0.0 10.547250060366151 0.0 61 1.9012961135606143E-4 0.0 0.0 10.811054896122688 0.0 62 1.9012961135606143E-4 0.0 0.0 11.086267508560585 4.753240283901536E-5 63 1.9012961135606143E-4 0.0 0.0 11.370986601566289 4.753240283901536E-5 64 1.9012961135606143E-4 0.0 0.0 11.644440515099143 4.753240283901536E-5 65 1.9012961135606143E-4 0.0 0.0 11.909718855343687 4.753240283901536E-5 66 1.9012961135606143E-4 0.0 0.0 12.171764992195179 4.753240283901536E-5 67 1.9012961135606143E-4 0.0 0.0 12.426871398232175 4.753240283901536E-5 68 1.9012961135606143E-4 0.0 0.0 12.706219329717069 4.753240283901536E-5 69 1.9012961135606143E-4 0.0 0.0 13.002678926224007 4.753240283901536E-5 70 1.9012961135606143E-4 0.0 0.0 13.286304773964412 4.753240283901536E-5 71 1.9012961135606143E-4 0.0 0.0 13.560424141137013 4.753240283901536E-5 72 1.9012961135606143E-4 0.0 0.0 13.842719081597926 4.753240283901536E-5 73 1.9012961135606143E-4 0.0 0.0 14.128626484674603 4.753240283901536E-5 74 1.9012961135606143E-4 0.0 0.0 14.42803309015756 4.753240283901536E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTACGCG 65 0.0 73.84615 1 CGTTTTT 6575 0.0 73.79468 1 GGGCGAT 1820 0.0 72.30769 7 CGTAAGG 220 0.0 70.90909 2 ACGTGCG 70 0.0 68.57143 1 ACGGGAT 1070 0.0 68.037384 5 ACGTAGG 450 0.0 67.55556 2 TACGGGA 1055 0.0 65.21327 4 ATTAGCG 215 0.0 65.11628 1 CGGGATC 740 0.0 64.324326 6 TATAGCG 200 0.0 64.0 1 GGCGATT 725 0.0 64.0 8 AGGGATT 5080 0.0 63.54331 6 TAGGGAT 4330 0.0 63.4642 5 ATAGGGA 3605 0.0 63.02358 4 TACGCGG 185 0.0 62.7027 2 TTAGGGA 3715 0.0 62.34186 4 CGAGGGA 1500 0.0 62.133335 4 ACGGGAC 955 0.0 61.57068 5 GCGGGAT 1690 0.0 61.538464 5 >>END_MODULE