##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547824_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4367780 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06011818360815 33.0 31.0 34.0 31.0 34.0 2 32.49626812705768 34.0 31.0 34.0 31.0 34.0 3 32.52966541355105 34.0 31.0 34.0 31.0 34.0 4 36.11159673793094 37.0 35.0 37.0 35.0 37.0 5 36.08898937217534 37.0 35.0 37.0 35.0 37.0 6 36.14785589017762 37.0 36.0 37.0 35.0 37.0 7 36.36180462385926 37.0 37.0 37.0 35.0 37.0 8 36.36663797169271 37.0 37.0 37.0 35.0 37.0 9 38.153721570225606 39.0 39.0 39.0 37.0 39.0 10-11 37.75867225455495 39.0 37.5 39.0 35.0 39.0 12-13 37.35889227479406 39.0 37.0 39.0 34.5 39.0 14-15 38.638223994798274 40.0 38.0 41.0 34.5 41.0 16-17 38.7354906840546 40.0 38.0 41.0 35.0 41.0 18-19 38.429257425969254 40.0 37.5 41.0 34.5 41.0 20-21 38.11016969719171 40.0 35.0 41.0 34.0 41.0 22-23 37.93198890511884 40.0 35.0 41.0 34.0 41.0 24-25 37.880478412374245 40.0 35.0 41.0 34.0 41.0 26-27 37.867148757492366 40.0 35.0 41.0 34.0 41.0 28-29 37.72845461538814 40.0 35.0 41.0 33.5 41.0 30-31 37.438126118989516 40.0 35.0 41.0 33.0 41.0 32-33 36.82105302922766 40.0 35.0 41.0 31.0 41.0 34-35 36.218661081831044 40.0 35.0 41.0 29.0 41.0 36-37 35.93755088397309 40.0 35.0 41.0 26.5 41.0 38-39 35.79538793162659 40.0 35.0 41.0 25.0 41.0 40-41 35.664079234759996 39.0 35.0 41.0 24.0 41.0 42-43 35.5822242649584 39.0 35.0 41.0 23.5 41.0 44-45 35.438576004285935 39.0 35.0 41.0 23.0 41.0 46-47 35.32365332045112 39.0 35.0 41.0 23.0 41.0 48-49 35.20574158954892 39.0 35.0 41.0 23.0 41.0 50-51 34.98555353062655 38.5 35.0 40.5 23.0 41.0 52-53 34.77699288883598 38.0 34.5 40.0 22.5 41.0 54-55 34.560475802352684 38.0 34.0 40.0 22.0 41.0 56-57 34.281047122336744 37.0 34.0 40.0 20.5 41.0 58-59 34.02700502314677 37.0 34.0 40.0 20.0 41.0 60-61 33.67427995457646 36.0 34.0 39.5 19.5 41.0 62-63 33.328544020074276 36.0 33.0 39.0 18.0 41.0 64-65 32.97416307597911 35.0 33.0 39.0 18.0 40.0 66-67 32.6316984829822 35.0 33.0 38.0 17.5 40.0 68-69 32.14821190627733 35.0 32.5 37.5 14.0 40.0 70-71 31.85124193526231 35.0 32.0 37.0 12.5 39.0 72-73 31.588736612192005 35.0 32.0 36.5 11.0 39.0 74-75 31.29017372669869 35.0 32.0 36.0 10.5 38.5 76-77 29.397601642024092 33.0 29.0 34.5 10.0 36.0 78-79 30.474811918182695 34.0 30.5 35.0 10.0 37.0 80-81 30.55921864196457 34.5 31.0 35.0 10.0 36.5 82-83 30.369122071166586 34.0 31.0 35.0 10.0 36.0 84-85 30.15826083273425 34.0 31.0 35.0 10.0 36.0 86 29.74861920701134 34.0 30.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 10.0 9 17.0 10 17.0 11 33.0 12 76.0 13 215.0 14 770.0 15 2598.0 16 7024.0 17 17952.0 18 42928.0 19 70050.0 20 80586.0 21 74512.0 22 59550.0 23 45357.0 24 37261.0 25 35173.0 26 37239.0 27 42148.0 28 50148.0 29 62251.0 30 78441.0 31 97566.0 32 118415.0 33 150170.0 34 327802.0 35 334933.0 36 368289.0 37 699359.0 38 1063389.0 39 462460.0 40 1041.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.720585743787463 23.141779118911668 28.96666040872022 19.170974728580653 2 36.48439252892774 23.22005687099625 28.633516340108706 11.662034259967307 3 27.32346867287272 23.670560330419573 36.89439486421019 12.111576132497516 4 25.430905402744642 25.639203439733688 35.95664158909103 12.973249568430646 5 22.79670679384035 30.104492442384917 34.12346775707567 12.975333006699055 6 21.216727948752 38.27159334948188 30.621597241619313 9.890081460146801 7 83.03163162979821 3.1337658948023943 12.245740399012771 1.5888620763866312 8 84.00757364152956 2.5861879490267365 12.049942991634193 1.356295417809505 9 79.16181675817006 5.222492891125468 13.3250072119017 2.2906831388027786 10-11 31.05481503189263 27.798858916886836 27.42187106493459 13.724454986285938 12-13 26.26507058505694 22.572989024172465 33.567132502094886 17.59480788867571 14-15 17.931512118284346 28.282319622325303 36.56301370490272 17.223154554487635 16-17 23.02083667217671 26.139228624152317 34.152624445370414 16.687310258300556 18-19 22.614142653705084 27.425522805635815 33.14200806817193 16.818326472487165 20-21 24.420483632417383 26.328329265668142 34.02300482167142 15.228182280243052 22-23 21.833013567533165 22.79931681540737 36.600412566566995 18.767257050492468 24-25 19.715954100252304 27.413022176025347 35.77835880012272 17.09266492359963 26-27 19.281591563677658 29.636840683367755 33.22763509151102 17.85393266144357 28-29 18.130915476512097 27.258824849236913 36.37055895672401 18.239700717526983 30-31 20.766190146939635 26.492199698702773 34.45467720443795 18.28693294991964 32-33 22.489949127474368 26.987508528359943 32.509169417873615 18.013372926292075 34-35 20.578520438300462 27.92926841553375 32.19973304516253 19.292478101003255 36-37 21.546758307423907 28.833675230895327 31.088459125688566 18.531107335992196 38-39 20.473570097395015 29.267900397913817 30.308589260448098 19.94994024424307 40-41 20.750049224090958 27.68109886486957 30.965650742482453 20.603201168557025 42-43 20.88293137474873 28.04852808520576 30.1684265233139 20.90011401673161 44-45 20.503963111695185 28.79296805242022 30.51395674690575 20.189112088978842 46-47 20.697516816323166 28.68225963761911 30.566901263342018 20.053322282715705 48-49 20.76021457124672 28.044315418816883 31.172082843000332 20.023387166936065 50-51 19.75761141815751 28.692905778221427 31.465756059142176 20.083726744478888 52-53 20.993697026864908 27.415952726556743 31.00939149865607 20.580958747922285 54-55 20.846471205051536 27.651552962832376 31.317076409526123 20.184899422589968 56-57 20.89745820531254 27.32143102445636 31.165489104304704 20.615621665926398 58-59 21.497992114987476 28.284380165667685 29.990601632866127 20.227026086478713 60-61 21.827060886766276 29.297068533671567 29.053020069692153 19.82285050987 62-63 21.619712989207333 28.36739716743975 30.0101081098407 20.00278173351222 64-65 21.24762465142475 29.65986153148739 29.483147044951895 19.609366772135957 66-67 20.421358218591596 29.695245639661337 28.543573623213625 21.339822518533445 68-69 19.832386246560038 30.75700928160301 28.535812243290643 20.87479222854631 70-71 20.300644721116907 29.85982581540279 29.109284350402266 20.730245113078038 72-73 21.526942748947977 29.860650032739745 28.589661109304952 20.022746109007322 74-75 20.853442710026606 30.26634812192922 27.713781371772388 21.16642779627179 76-77 21.752583692402087 29.48760010806405 28.49858509357156 20.261231105962295 78-79 20.10435507282876 29.589677135753174 29.0655893840807 21.240378407337364 80-81 19.37778459537797 29.424089583266554 28.989841521322045 22.208284300033426 82-83 20.54969572643311 29.315682108531107 29.0133088204992 21.12131334453658 84-85 19.708101140625214 28.988238876500187 28.774411714875747 22.529248267998845 86 19.81336056303202 29.255067791875966 29.10602182344349 21.825549821648526 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1716.0 1 1862.5 2 18015.0 3 21986.5 4 10568.0 5 12359.5 6 14403.5 7 15272.0 8 15756.0 9 16636.5 10 17413.0 11 18042.5 12 18674.5 13 19349.0 14 19641.0 15 19793.0 16 20343.0 17 20890.5 18 20871.0 19 21454.5 20 22941.5 21 23676.0 22 23940.0 23 25027.0 24 28471.0 25 32886.0 26 36962.0 27 43400.5 28 51462.0 29 55367.0 30 62303.0 31 73088.0 32 79807.0 33 88116.0 34 100129.0 35 113580.0 36 120457.0 37 122686.0 38 132843.5 39 144662.0 40 156821.0 41 174223.5 42 188406.0 43 193455.0 44 197819.5 45 202188.5 46 205672.0 47 211700.5 48 212486.0 49 205837.0 50 200952.0 51 184723.0 52 159601.0 53 141443.0 54 125784.0 55 111093.0 56 96885.0 57 90974.0 58 80353.5 59 61362.0 60 46624.0 61 36063.5 62 29619.0 63 21963.0 64 16558.0 65 14535.0 66 10471.0 67 6951.5 68 4626.5 69 3126.0 70 2316.5 71 2161.0 72 1595.0 73 843.5 74 458.5 75 207.0 76 128.0 77 79.0 78 52.5 79 48.0 80 35.0 81 28.5 82 23.5 83 13.0 84 11.5 85 7.0 86 5.0 87 5.0 88 5.0 89 5.5 90 3.0 91 0.5 92 2.0 93 3.0 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 4367780.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.317098797924643 #Duplication Level Percentage of deduplicated Percentage of total 1 80.00515239635814 15.454674331834681 2 7.270076162249777 2.8087355898923154 3 2.4017003377948507 1.3918164812457636 4 1.2550847482404934 0.9697838432611997 5 0.7988586831829224 0.7715816054312248 6 0.6197641980064739 0.7183227746584553 7 0.4644959402350833 0.6280899778129203 8 0.37070498292927406 0.5728755824102204 9 0.2974591310798651 0.5171442681073115 >10 3.88263607511979 17.906399579984303 >50 1.4256578905976107 19.81197505586561 >100 1.2020301894943657 35.40928829838224 >500 0.0037312680387212205 0.5046106656186222 >1k 0.0025276331875207537 0.834724577541067 >5k 0.0 0.0 >10k+ 1.203634851200359E-4 1.6999773679539598 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 73115 1.6739625164271095 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.289492602649401E-5 0.0 0.0 0.01918594801020198 0.0 2 2.289492602649401E-5 0.0 0.0 0.05796995269908283 0.0 3 2.289492602649401E-5 0.0 0.0 0.10923169207240291 0.0 4 2.289492602649401E-5 0.0 0.0 0.1753293435108911 0.0 5 2.289492602649401E-5 0.0 0.0 0.35200948765734535 0.0 6 2.289492602649401E-5 0.0 0.0 0.6075626519650715 0.0 7 2.289492602649401E-5 0.0 0.0 0.787539665459341 0.0 8 2.289492602649401E-5 0.0 0.0 1.024227410721236 0.0 9 2.289492602649401E-5 0.0 0.0 1.1558732353735766 0.0 10 2.289492602649401E-5 0.0 0.0 1.3342476040459914 0.0 11 2.289492602649401E-5 0.0 0.0 1.5638608171656998 0.0 12 2.289492602649401E-5 0.0 0.0 1.7350461790657954 0.0 13 2.289492602649401E-5 0.0 0.0 1.813163666668193 0.0 14 2.289492602649401E-5 0.0 0.0 1.8551758559268094 0.0 15 2.289492602649401E-5 0.0 0.0 1.9015838709825128 0.0 16 2.289492602649401E-5 0.0 0.0 1.9870277349133885 0.0 17 2.289492602649401E-5 0.0 0.0 2.0940386191612217 0.0 18 2.289492602649401E-5 0.0 0.0 2.2201438717151505 0.0 19 2.289492602649401E-5 0.0 0.0 2.307144590615828 0.0 20 2.289492602649401E-5 0.0 0.0 2.401700635105248 0.0 21 2.289492602649401E-5 0.0 0.0 2.516175265237718 0.0 22 2.289492602649401E-5 0.0 0.0 2.646859502996946 0.0 23 2.289492602649401E-5 0.0 0.0 2.781641932514916 0.0 24 4.578985205298802E-5 0.0 0.0 2.886157269825861 0.0 25 4.578985205298802E-5 0.0 0.0 2.983323335882302 0.0 26 4.578985205298802E-5 0.0 0.0 3.0754983080649665 0.0 27 4.578985205298802E-5 0.0 0.0 3.1780904715896865 0.0 28 4.578985205298802E-5 0.0 0.0 3.2815755372294393 0.0 29 4.578985205298802E-5 0.0 0.0 3.4025981162054864 0.0 30 4.578985205298802E-5 0.0 0.0 3.5371973863152446 0.0 31 4.578985205298802E-5 0.0 0.0 3.6544194075708942 0.0 32 4.578985205298802E-5 0.0 0.0 3.7678408711061455 0.0 33 6.868477807948202E-5 0.0 0.0 3.883299983057755 0.0 34 6.868477807948202E-5 0.0 0.0 4.007298902417246 0.0 35 6.868477807948202E-5 0.0 0.0 4.147736378663761 0.0 36 6.868477807948202E-5 0.0 0.0 4.277596399086034 0.0 37 6.868477807948202E-5 0.0 0.0 4.412768042346455 0.0 38 6.868477807948202E-5 0.0 0.0 4.565500093869197 0.0 39 6.868477807948202E-5 0.0 0.0 4.780597923888108 0.0 40 6.868477807948202E-5 0.0 0.0 4.944777438424096 0.0 41 9.157970410597604E-5 0.0 0.0 5.105980612576641 0.0 42 9.157970410597604E-5 0.0 0.0 5.270915659671504 0.0 43 9.157970410597604E-5 0.0 0.0 5.4283869608817295 0.0 44 9.157970410597604E-5 0.0 0.0 5.5753952808978475 0.0 45 9.157970410597604E-5 0.0 0.0 5.724372564552244 0.0 46 9.157970410597604E-5 0.0 0.0 5.8904294630224046 0.0 47 1.1447463013247004E-4 0.0 0.0 6.054929506522765 0.0 48 1.3736955615896405E-4 0.0 0.0 6.220391136916237 0.0 49 1.3736955615896405E-4 0.0 0.0 6.386081716569974 0.0 50 1.3736955615896405E-4 0.0 0.0 6.557518922656361 0.0 51 1.3736955615896405E-4 0.0 0.0 6.731131146715265 0.0 52 1.3736955615896405E-4 0.0 0.0 6.924089583266556 0.0 53 1.6026448218545806E-4 0.0 0.0 7.101799999084203 0.0 54 1.6026448218545806E-4 0.0 0.0 7.280311737312776 0.0 55 1.6026448218545806E-4 0.0 0.0 7.457632939387973 0.0 56 1.6026448218545806E-4 0.0 0.0 7.637838902142507 0.0 57 1.6026448218545806E-4 0.0 0.0 7.8288970598336 0.0 58 1.8315940821195207E-4 0.0 0.0 8.008896968253895 0.0 59 2.060543342384461E-4 0.0 0.0 8.197276419599888 0.0 60 2.060543342384461E-4 0.0 0.0 8.389983011964889 0.0 61 2.060543342384461E-4 0.0 0.0 8.5924657377432 0.0 62 2.060543342384461E-4 0.0 0.0 8.830916392309136 0.0 63 2.2894926026494007E-4 0.0 0.0 9.056019305001625 0.0 64 2.2894926026494007E-4 0.0 0.0 9.267362367152192 0.0 65 2.2894926026494007E-4 0.0 0.0 9.475912248327525 0.0 66 2.747391123179281E-4 0.0 0.0 9.692910357206635 0.0 67 2.976340383444221E-4 0.0 0.0 9.903864205614752 0.0 68 3.205289643709161E-4 0.0 0.0 10.136774288082275 0.0 69 3.4342389039741014E-4 0.0 0.0 10.428478540585836 0.0 70 3.4342389039741014E-4 0.0 0.0 10.651246170823622 0.0 71 3.6631881642390415E-4 0.0 0.0 10.872594315647767 0.0 72 3.6631881642390415E-4 0.0 0.0 11.103627014181118 0.0 73 3.6631881642390415E-4 0.0 0.0 11.326188590084666 0.0 74 4.121086684768922E-4 0.0 0.0 11.566493733658746 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 42560 0.0 76.8515 1 TACGGGA 1920 0.0 70.00001 4 TATCGCG 175 0.0 66.28571 1 CCGATCC 2910 0.0 64.467354 80 GCGGGAT 3070 0.0 62.9316 5 TAGGGTA 2570 0.0 62.879375 5 CGAGGGA 3310 0.0 62.477345 4 ACGGGAT 2515 0.0 61.2326 5 GCGAGGG 3415 0.0 60.907764 3 TAAGGGA 6095 0.0 59.72108 4 GTACGGG 1720 0.0 59.53488 3 TAGGGAT 7540 0.0 59.416443 5 TAGGGAC 4725 0.0 59.34392 5 ATTAGCG 385 0.0 59.220776 1 TAGCGGG 2960 0.0 59.189194 3 GTAGGGA 6995 0.0 59.185135 4 CGATAGG 690 0.0 59.130432 2 AGGGATT 8220 0.0 58.929443 6 CGGGATA 1275 0.0 58.666668 6 GGGCGAT 2515 0.0 58.369778 7 >>END_MODULE