##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547820_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1310864 Sequences flagged as poor quality 0 Sequence length 86 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09794685032162 33.0 31.0 34.0 31.0 34.0 2 32.53006948089199 34.0 31.0 34.0 31.0 34.0 3 32.59770121080448 34.0 31.0 34.0 31.0 34.0 4 36.14958836309488 37.0 35.0 37.0 35.0 37.0 5 36.11913211439173 37.0 35.0 37.0 35.0 37.0 6 36.17906739371895 37.0 36.0 37.0 35.0 37.0 7 36.37791258284612 37.0 37.0 37.0 35.0 37.0 8 36.37581472982705 37.0 37.0 37.0 35.0 37.0 9 38.167630661914586 39.0 39.0 39.0 37.0 39.0 10-11 37.78664605939289 39.0 37.5 39.0 35.0 39.0 12-13 37.22565803927791 39.0 37.0 39.0 34.5 39.0 14-15 38.49158799082132 40.0 37.0 41.0 34.0 41.0 16-17 38.60177333422842 40.0 37.0 41.0 35.0 41.0 18-19 38.38196029488948 40.0 37.0 41.0 35.0 41.0 20-21 38.11406065007506 40.0 35.0 41.0 34.0 41.0 22-23 37.90590442639359 40.0 35.0 41.0 34.0 41.0 24-25 37.8426137265193 40.0 35.0 41.0 34.0 41.0 26-27 37.79483417044026 40.0 35.0 41.0 34.0 41.0 28-29 37.689265629386426 40.0 35.0 41.0 34.0 41.0 30-31 37.49123669579758 40.0 35.0 41.0 33.5 41.0 32-33 37.07353089260213 40.0 35.0 41.0 33.0 41.0 34-35 36.67774116918308 40.0 35.0 41.0 31.5 41.0 36-37 36.45945803683677 39.0 35.0 41.0 31.0 41.0 38-39 36.359845109790186 39.0 35.0 41.0 31.0 41.0 40-41 36.222392635696764 39.0 35.0 41.0 30.0 41.0 42-43 36.161294001513504 39.0 35.0 41.0 30.0 41.0 44-45 36.02370879053815 39.0 35.0 41.0 30.0 41.0 46-47 35.8886112518156 38.5 35.0 41.0 29.0 41.0 48-49 35.76986971951324 38.0 35.0 40.5 29.0 41.0 50-51 35.54720398149617 38.0 35.0 40.0 28.5 41.0 52-53 35.34927803341918 38.0 35.0 40.0 27.5 41.0 54-55 35.16873527688608 37.0 35.0 40.0 27.5 41.0 56-57 34.8847759950689 37.0 34.5 40.0 26.5 41.0 58-59 34.63118942926192 36.0 34.0 40.0 26.0 41.0 60-61 34.26418453783154 36.0 34.0 39.0 25.5 41.0 62-63 33.847537196841174 35.0 33.5 39.0 24.5 40.5 64-65 33.44896915316921 35.0 33.0 38.5 23.0 40.0 66-67 33.12466243637784 35.0 33.0 37.5 22.5 40.0 68-69 32.655365850309416 35.0 33.0 37.0 19.5 39.5 70-71 32.3333045991041 35.0 33.0 36.5 19.5 39.0 72-73 32.050104740079824 35.0 33.0 36.0 19.0 39.0 74-75 31.752676097596698 35.0 32.5 36.0 18.0 38.0 76-77 29.837661649110814 33.0 29.5 34.5 14.0 36.0 78-79 30.852672359604046 34.0 31.0 35.0 15.0 36.5 80-81 30.987036031197743 35.0 32.0 35.0 15.0 36.0 82-83 30.798951302347156 34.5 31.5 35.0 12.0 36.0 84-85 30.578271277569606 34.0 31.0 35.0 10.5 36.0 86 30.151610693405267 34.0 31.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 14.0 12 21.0 13 43.0 14 200.0 15 509.0 16 1359.0 17 3589.0 18 7972.0 19 13090.0 20 15671.0 21 14787.0 22 12479.0 23 10118.0 24 9413.0 25 10021.0 26 11168.0 27 13676.0 28 16856.0 29 20803.0 30 26371.0 31 32863.0 32 39605.0 33 50398.0 34 121320.0 35 134833.0 36 114089.0 37 200940.0 38 299354.0 39 129002.0 40 296.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.20008177812496 23.52784117955791 29.08829596357822 17.183781078738907 2 32.51977321827436 25.67596638552893 29.43821784716035 12.36604254903636 3 27.35585079764186 25.020978530190774 35.55891381562084 12.064256856546523 4 26.079974734221096 25.76529678135947 34.48229564623027 13.672432838189163 5 23.651500079336987 30.277435340355673 32.62771729180144 13.443347288505903 6 20.938556555065972 39.58343504741911 29.051755178264106 10.426253219250816 7 85.26109497247617 3.5179850846464618 9.645623039460997 1.5752969034163726 8 85.8658106409208 3.3721270856473287 9.31957853751419 1.442483735917685 9 81.72968362850762 5.396288249581955 10.401612981972196 2.472415139938239 10-11 35.789639504937206 28.373576511369603 22.53738755507818 13.29939642861502 12-13 26.708758498211864 26.658562596882668 29.724364998962514 16.90831390594295 14-15 16.30714551623967 32.01037636246018 34.53706868141928 17.145409439880872 16-17 20.44479823993946 27.913917843498638 33.03279363839422 18.608490278167682 18-19 22.577971475301787 30.545006957243466 29.737676829938113 17.13934473751663 20-21 24.857460423049226 29.047330615532964 30.064255330835238 16.03095363058258 22-23 21.030061089479915 26.549817524930123 32.400882166265916 20.01923921932405 24-25 18.780704939642863 29.57721014536977 33.92682230956072 17.71526260542665 26-27 18.223095607172063 34.23429127659315 30.177386822736764 17.36522629349803 28-29 16.837826044501945 29.867820002685253 34.96068242014427 18.33367153266853 30-31 21.404813924251485 29.719749722320543 31.226351475057673 17.649084878370296 32-33 23.247453587862662 29.679165802096936 29.256314919015246 17.817065691025157 34-35 20.01683622404765 29.433449999389715 30.611833111596624 19.937880664966006 36-37 21.6209690707808 30.59482143075102 30.25489295609613 17.529316542372054 38-39 19.980486152644364 31.777667248471236 28.778157001794234 19.463689597090163 40-41 20.53626463157124 28.713810128281803 29.624316481343605 21.125608758803356 42-43 20.75981947784057 29.76349949346385 28.20792240842681 21.26875862026877 44-45 19.524069621257432 32.06061040657154 28.345045710310146 20.07027426186088 46-47 21.137280450145855 30.856023203017248 28.616279034285785 19.39041731255111 48-49 20.765922322986977 29.214281573069368 30.413566929902718 19.606229174040937 50-51 19.35917837395794 30.962746707515045 29.81503039216883 19.86304452635819 52-53 20.938747268976794 28.766790452709053 29.909967776977624 20.384494501336523 54-55 21.025789097877432 29.004076700557803 30.239406986537126 19.730727215027645 56-57 21.470724651832683 28.033381037239565 29.8125511113281 20.683343199599655 58-59 21.706752187869984 29.704683323365355 28.91180931050056 19.67675517826411 60-61 22.421929353464584 31.52298789195523 27.200609674230126 18.854473080350058 62-63 22.044468381159295 29.40045649281695 29.908213208998035 18.646861917025717 64-65 20.295469247763307 31.860437085769384 29.006594124180694 18.837499542286615 66-67 19.016846904026657 31.710459666296426 26.854883496686156 22.41780993299076 68-69 18.372272028219555 34.02793882508025 26.238648708027686 21.36114043867251 70-71 19.046254989075905 32.16538862917893 28.55235173137717 20.236004650368 72-73 21.556927339525686 31.990160687912706 27.05868038179399 19.394231590767617 74-75 20.228032808895506 33.16434809408146 25.854703462754337 20.752915634268696 76-77 22.97000299039412 30.955080008299866 26.972630265229654 19.10228673607636 78-79 19.149736357089676 30.93204176787218 28.79711396453026 21.121107910507877 80-81 17.874470578183548 30.62750979506646 29.39885449596602 22.09916513078397 82-83 19.5686203908262 29.900966080386677 29.78955101368258 20.740862515104542 84-85 18.07052447851188 30.088781139767363 28.79814381964872 23.042550562072037 86 19.133182389630047 30.173076688352108 29.111181632877248 21.582559289140598 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 720.0 1 999.5 2 9215.5 3 10075.0 4 3391.0 5 5090.0 6 7417.5 7 8439.0 8 8787.0 9 8387.0 10 7082.0 11 6039.5 12 5340.5 13 4947.0 14 4767.0 15 4876.0 16 5166.5 17 5082.5 18 4904.5 19 5000.0 20 5041.0 21 5074.0 22 5174.0 23 5682.0 24 6673.5 25 7914.0 26 8845.5 27 10757.5 28 14289.0 29 16183.0 30 18478.5 31 20961.5 32 22701.5 33 24211.0 34 27313.0 35 31541.0 36 32624.0 37 35311.0 38 39380.5 39 41579.5 40 46938.5 41 53455.5 42 58898.5 43 62367.0 44 63197.5 45 65940.0 46 66879.0 47 67062.5 48 69434.0 49 65555.0 50 60461.0 51 53938.0 52 45480.0 53 42152.5 54 36652.0 55 31022.0 56 27041.5 57 24583.0 58 22673.0 59 18351.0 60 13443.0 61 9661.0 62 7283.5 63 5416.5 64 4641.0 65 3821.5 66 2472.0 67 1733.5 68 1286.5 69 946.5 70 745.0 71 645.0 72 511.5 73 286.0 74 199.5 75 132.0 76 59.5 77 66.5 78 49.5 79 26.0 80 25.5 81 17.5 82 5.5 83 3.0 84 5.0 85 3.0 86 1.0 87 2.0 88 2.0 89 0.5 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1310864.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.676771794940898 #Duplication Level Percentage of deduplicated Percentage of total 1 77.4478607758462 16.01371743268526 2 7.786903821047976 3.220160665939246 3 2.919796136294957 1.811158751937629 4 1.5540124440983798 1.285278426924822 5 0.9831985644509459 1.0164686173132849 6 0.7044242114282575 0.8739131199919968 7 0.5233262804946206 0.7574488653257749 8 0.41555002827675624 0.687378648324778 9 0.34338224075478235 0.639003260746988 >10 4.690200755611254 23.726014468395977 >50 1.9242941171867862 28.62441348910715 >100 0.7018407778021917 18.562487088807483 >500 0.0037213190763636804 0.505681654870764 >1k 0.0011163957229091042 0.2824646005828628 >5k 0.0 0.0 >10k+ 3.721319076363681E-4 1.9944109090459832 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25920 1.9773218274359505 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03577792967081253 0.0 2 0.0 0.0 0.0 0.14639199794944402 0.0 3 0.0 0.0 0.0 0.23495953813667933 0.0 4 0.0 0.0 0.0 0.35068473922542687 0.0 5 0.0 0.0 0.0 0.6950377766114563 0.0 6 0.0 0.0 0.0 1.0179545704207302 0.0 7 0.0 0.0 0.0 1.2397167059283039 0.0 8 0.0 0.0 0.0 1.5397478304385503 0.0 9 0.0 0.0 0.0 1.6932343858706929 0.0 10 0.0 0.0 0.0 1.9495538820197977 0.0 11 0.0 0.0 0.0 2.325260286345494 0.0 12 0.0 0.0 0.0 2.5947008995593746 0.0 13 0.0 0.0 0.0 2.689294999328687 0.0 14 0.0 0.0 0.0 2.7323963431751883 0.0 15 0.0 0.0 0.0 2.7940350791539017 0.0 16 0.0 0.0 0.0 2.9187619768335997 0.0 17 0.0 0.0 0.0 3.0697311086428494 0.0 18 7.628556433009069E-5 0.0 0.0 3.229473080350059 0.0 19 7.628556433009069E-5 0.0 0.0 3.3448168536171563 0.0 20 7.628556433009069E-5 0.0 0.0 3.44871779223474 0.0 21 7.628556433009069E-5 0.0 0.0 3.5821412442480685 0.0 22 7.628556433009069E-5 0.0 0.0 3.7252529629313185 0.0 23 7.628556433009069E-5 0.0 0.0 3.8731706721673644 0.0 24 7.628556433009069E-5 0.0 0.0 3.9901164422853936 0.0 25 7.628556433009069E-5 0.0 0.0 4.0879908213209 0.0 26 7.628556433009069E-5 0.0 0.0 4.187467197207338 0.0 27 7.628556433009069E-5 0.0 0.0 4.287325000915427 0.0 28 7.628556433009069E-5 0.0 0.0 4.390157941632389 0.0 29 7.628556433009069E-5 0.0 0.0 4.51717340624199 0.0 30 7.628556433009069E-5 0.0 0.0 4.658759413638639 0.0 31 7.628556433009069E-5 0.0 0.0 4.780358603180803 0.0 32 7.628556433009069E-5 0.0 0.0 4.89600751870522 0.0 33 7.628556433009069E-5 0.0 0.0 5.015775854703462 0.0 34 7.628556433009069E-5 0.0 0.0 5.146453026400908 0.0 35 7.628556433009069E-5 0.0 0.0 5.29139559862808 0.0 36 7.628556433009069E-5 0.0 0.0 5.422377912582846 0.0 37 7.628556433009069E-5 0.0 0.0 5.554199367745243 0.0 38 7.628556433009069E-5 0.0 0.0 5.697158515299833 0.0 39 7.628556433009069E-5 0.0 0.0 5.880396440820711 0.0 40 7.628556433009069E-5 0.0 0.0 6.036247848747086 0.0 41 7.628556433009069E-5 0.0 0.0 6.19110754433717 0.0 42 7.628556433009069E-5 0.0 0.0 6.351841228380671 0.0 43 7.628556433009069E-5 0.0 0.0 6.504336071476522 0.0 44 7.628556433009069E-5 0.0 0.0 6.650499212732976 0.0 45 7.628556433009069E-5 0.0 0.0 6.802536342442846 0.0 46 7.628556433009069E-5 0.0 0.0 6.959684604962834 0.0 47 7.628556433009069E-5 0.0 0.0 7.1142391582955975 0.0 48 7.628556433009069E-5 0.0 0.0 7.271387420815584 0.0 49 7.628556433009069E-5 0.0 0.0 7.431510820344444 0.0 50 7.628556433009069E-5 0.0 0.0 7.604907908066741 0.0 51 7.628556433009069E-5 0.0 0.0 7.777694711274396 0.0 52 7.628556433009069E-5 0.0 0.0 7.967569480891992 0.0 53 7.628556433009069E-5 0.0 0.0 8.146916842632034 0.0 54 7.628556433009069E-5 0.0 0.0 8.320237644790001 0.0 55 7.628556433009069E-5 0.0 0.0 8.511104126743888 0.0 56 7.628556433009069E-5 0.0 0.0 8.69815633048127 0.0 57 7.628556433009069E-5 0.0 0.0 8.881546827130808 0.0 58 7.628556433009069E-5 0.0 0.0 9.063335326929414 0.0 59 7.628556433009069E-5 0.0 0.0 9.247336108093593 0.0 60 7.628556433009069E-5 0.0 0.0 9.448424855667712 0.0 61 7.628556433009069E-5 0.0 0.0 9.661185294584335 0.0 62 7.628556433009069E-5 0.0 0.0 9.896449974978335 0.0 63 7.628556433009069E-5 0.0 0.0 10.124620097889636 0.0 64 2.2885669299027207E-4 0.0 0.0 10.349662512663404 0.0 65 2.2885669299027207E-4 0.0 0.0 10.559066386749503 0.0 66 2.2885669299027207E-4 0.0 0.0 10.766944549549 0.0 67 2.2885669299027207E-4 0.0 0.0 10.984968692404399 0.0 68 2.2885669299027207E-4 0.0 0.0 11.214435669909312 0.0 69 2.2885669299027207E-4 0.0 0.0 11.470068595979445 0.0 70 2.2885669299027207E-4 0.0 0.0 11.687940167706184 0.0 71 2.2885669299027207E-4 0.0 0.0 11.897038899534964 0.0 72 3.0514225732036277E-4 0.0 0.0 12.115063042390362 0.0 73 3.0514225732036277E-4 0.0 0.0 12.34018174272846 0.0 74 3.0514225732036277E-4 0.0 0.0 12.586660401078984 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 8680 0.0 76.26728 1 CTAGCGG 155 0.0 67.09678 2 ACGGGAT 715 0.0 65.454544 5 TTACGGG 555 0.0 64.86487 3 TACGGGA 590 0.0 64.40678 4 TAGCGGG 820 0.0 64.39024 3 TAGACGG 250 0.0 64.0 2 GTACGCG 25 1.235591E-4 64.0 1 CGAACGG 70 0.0 62.857143 2 TATGGGA 1330 0.0 62.857143 4 TTAGGGA 1770 0.0 62.824856 4 CGGGATT 815 0.0 62.331284 6 CGGGACT 435 0.0 61.609196 6 CGGGTAC 65 0.0 61.538464 6 TAGGGAT 2005 0.0 61.44639 5 ATAGGGA 1910 0.0 61.361256 4 TTATGGG 1690 0.0 61.30177 3 GCGGGAT 950 0.0 61.05263 5 TATCGGG 105 0.0 60.952385 3 AGGGTAA 1265 0.0 60.71146 6 >>END_MODULE