##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547819_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 852556 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.27713252853771 33.0 31.0 34.0 31.0 34.0 2 32.71961959097115 34.0 31.0 34.0 31.0 34.0 3 32.81260468520543 34.0 31.0 34.0 31.0 34.0 4 36.307393297331785 37.0 37.0 37.0 35.0 37.0 5 36.29545038683676 37.0 37.0 37.0 35.0 37.0 6 36.34791849450359 37.0 37.0 37.0 35.0 37.0 7 36.48665073027461 37.0 37.0 37.0 35.0 37.0 8 36.50140635923036 37.0 37.0 37.0 35.0 37.0 9 38.37034986558068 39.0 39.0 39.0 37.0 39.0 10-11 37.96032870568033 39.0 38.5 39.0 35.0 39.0 12-13 36.598855676342666 39.0 35.0 39.0 34.0 39.0 14-15 37.55833693036 39.0 35.0 41.0 33.0 41.0 16-17 37.834407358578204 39.5 35.0 41.0 35.0 41.0 18-19 37.75658490468661 38.5 35.0 41.0 35.0 41.0 20-21 37.47127696010585 38.0 35.0 41.0 34.0 41.0 22-23 37.30480167871671 38.0 35.0 41.0 34.0 41.0 24-25 37.28846081665017 38.0 35.0 41.0 34.0 41.0 26-27 37.27262373380752 38.0 35.0 41.0 34.0 41.0 28-29 37.309960870605565 38.0 35.0 41.0 34.0 41.0 30-31 37.164995613191394 38.0 35.0 41.0 34.0 41.0 32-33 36.70476367534802 38.0 35.0 41.0 33.5 41.0 34-35 36.371820150230604 38.0 35.0 41.0 33.0 41.0 36-37 36.14930749417047 37.0 35.0 41.0 32.5 41.0 38-39 36.11656770933522 37.0 35.0 41.0 32.0 41.0 40-41 36.04229458240866 37.0 35.0 41.0 31.5 41.0 42-43 35.976927028840336 37.0 35.0 41.0 32.0 41.0 44-45 35.81265043000108 36.0 35.0 40.0 32.0 41.0 46-47 35.692637785670385 36.0 35.0 40.0 31.0 41.0 48-49 35.66169788260244 36.0 35.0 40.0 31.0 41.0 50-51 35.43027730729712 35.5 35.0 40.0 31.0 41.0 52-53 35.26180860846678 35.5 35.0 40.0 30.5 41.0 54-55 35.111287117796365 35.5 35.0 40.0 31.0 41.0 56-57 34.85364890986634 35.0 34.5 39.5 30.0 41.0 58-59 34.64200064277303 35.0 35.0 39.0 29.0 41.0 60-61 34.284537320715586 35.0 34.0 38.5 28.5 40.0 62-63 33.7480095149175 35.0 33.5 37.5 26.5 40.0 64-65 33.47072509019935 35.0 33.5 37.0 26.5 40.0 66-67 33.27019163550547 35.0 34.0 36.5 26.0 39.5 68-69 33.00054014047171 35.0 34.0 36.0 25.5 39.0 70-71 32.76868381666424 35.0 33.5 35.5 25.0 39.0 72-73 32.54634475623889 35.0 33.5 35.0 25.0 37.5 74-75 32.310271114155555 35.0 33.0 35.0 24.5 37.0 76-77 30.377831485556374 33.0 30.0 34.5 20.0 35.5 78-79 31.22459697662089 34.0 31.5 35.0 20.0 36.0 80-81 31.680895448510128 35.0 33.0 35.0 20.0 36.0 82-83 31.57295239257011 35.0 33.0 35.0 20.0 36.0 84-85 31.438553596479295 35.0 33.0 35.0 19.5 35.0 86 31.053265709232004 34.0 32.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 3.0 11 2.0 12 12.0 13 15.0 14 49.0 15 206.0 16 576.0 17 1398.0 18 3572.0 19 6907.0 20 8620.0 21 8597.0 22 6591.0 23 4739.0 24 4197.0 25 4421.0 26 4951.0 27 6158.0 28 8003.0 29 10624.0 30 14506.0 31 19033.0 32 25633.0 33 38114.0 34 151872.0 35 131863.0 36 59918.0 37 115339.0 38 155473.0 39 61100.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.638404984540607 24.67919995871239 29.639812516714443 16.04258254003256 2 28.433088266342622 26.631681672523566 32.35670149526835 12.578528565865469 3 27.82116365376585 25.704704441702365 34.108609874307376 12.365522030224408 4 25.02287239782489 27.567455979431266 33.6628913525915 13.746780270152342 5 23.634576497027762 30.659921459704698 31.596047649655855 14.109454393611681 6 21.2069353801979 39.9172605670478 28.2226622063536 10.653141846400706 7 88.09403722453423 3.2680551189599276 7.183105860494794 1.4548017960110537 8 90.35875649224215 2.1695935516259346 6.16065103054814 1.310998925583774 9 87.57970150934366 3.338666316347548 7.08927038223882 1.9923617920699637 10-11 52.889370317023165 20.91862587325642 16.755321644560592 9.436682165159825 12-13 33.029208638494126 32.38045360070189 21.577233636265536 13.013104124538447 14-15 12.475778717175178 35.48195074575746 38.76408118645578 13.278189350611571 16-17 15.588594766795378 20.472496821323176 38.51236751603413 25.42654089584731 18-19 25.32320457541792 24.467718249592988 31.23935553793534 18.969721637053755 20-21 27.30594823096665 26.513331675573216 28.416021938734815 17.76469815472532 22-23 19.76667808331652 25.64922421518352 28.2678791774382 26.316218524061764 24-25 16.466425665880013 24.541144511328287 40.296649135071476 18.69578068772022 26-27 14.378293038815047 38.769594020803325 29.29361824912381 17.558494691257817 28-29 12.471966650871028 26.881225397510544 43.139688184705754 17.50711976691267 30-31 23.52578598942474 30.063714289735806 30.100310126255636 16.310189594583814 32-33 29.594478251282023 28.581876146552247 26.207779899502203 15.61586570266352 34-35 18.989661676183147 28.428337845255914 29.406279470204886 23.17572100835605 36-37 24.850039176312173 28.885023388492954 29.944543232350718 16.320394202844156 38-39 18.643408761418605 32.6836594898165 28.26307010917758 20.409861639587312 40-41 20.76631916261219 25.669164254312914 27.946727253107127 25.617789329967767 42-43 22.260004034925565 25.011788081955906 25.942049554516068 26.78615832860246 44-45 16.992197579983014 36.493555848530775 26.19464293254637 20.319603638939846 46-47 21.866246909293935 31.859666696381232 25.95981964821079 20.314266746114036 48-49 21.961959097115027 24.32491238112218 32.79127705394133 20.92185146782147 50-51 18.185667569051184 34.690624428190056 26.957584017941343 20.166123984817418 52-53 24.85496553892061 24.742069729143893 30.079549026691506 20.323415705243995 54-55 24.705239303928423 27.503002735304193 29.535479194328584 18.2562787664388 56-57 24.868219800224267 21.650777192348656 28.97328738522748 24.507715622199598 58-59 26.890550298162232 25.92773964408203 26.5831218125261 20.59858824522964 60-61 28.498773101121806 29.75904222127344 24.03865552526755 17.703529152337207 62-63 25.93055470842971 23.74981819376088 31.0640591351184 19.255567962691014 64-65 17.76452221320359 31.962181956375886 31.746184414865414 18.527111415555105 66-67 16.711981383041113 28.78831419871539 23.251082626830378 31.248621791413118 68-69 16.47498815327087 34.485652555374664 21.724203454083955 27.315155837270517 70-71 19.3030721735581 30.27191175711625 28.290868869610915 22.13414719971474 72-73 25.24960237216089 31.111446051637664 24.266147912864376 19.37280366333707 74-75 25.277166543898584 33.40126630977907 21.080785309117527 20.24078183720483 76-77 33.178289754573306 26.612621341002818 23.159006563791703 17.05008234063217 78-79 18.823807468365715 29.87463580105002 31.55581568835361 19.74574104223066 80-81 14.759558316403847 28.597534941986215 33.02879810827676 23.614108633333178 82-83 18.857822829233506 25.155825541078826 33.73004236671843 22.256309262969236 84-85 15.234893660944266 25.792675202567338 29.584273643021692 29.388157493466704 86 18.16232599383501 24.75673152262139 33.74499739606548 23.335945087478123 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 743.0 1 672.0 2 1874.0 3 2051.5 4 975.0 5 1172.5 6 1443.5 7 1536.0 8 1608.5 9 1674.5 10 1631.0 11 1641.5 12 1765.5 13 1943.5 14 2045.0 15 2082.0 16 2106.5 17 2172.5 18 2362.0 19 2522.0 20 2673.0 21 2775.0 22 2900.0 23 2780.5 24 2781.5 25 3494.0 26 4085.0 27 5264.0 28 7550.5 29 8782.0 30 10079.5 31 10880.5 32 10221.5 33 11500.5 34 12667.5 35 13493.0 36 14593.0 37 15823.0 38 17825.5 39 22587.0 40 30138.5 41 36851.0 42 45330.5 43 50660.0 44 54230.5 45 58054.5 46 63686.0 47 69767.5 48 65855.5 49 51808.0 50 42376.0 51 36077.0 52 26096.0 53 20133.0 54 16960.0 55 17906.5 56 19313.5 57 18882.0 58 16246.5 59 11331.0 60 7409.5 61 5053.0 62 4171.5 63 3131.5 64 2258.0 65 2102.0 66 1500.0 67 898.0 68 706.0 69 481.5 70 198.5 71 104.0 72 131.5 73 114.5 74 55.0 75 29.0 76 19.5 77 16.5 78 16.0 79 20.0 80 12.0 81 7.0 82 10.5 83 11.5 84 10.5 85 6.0 86 3.0 87 2.5 88 1.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 852556.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.970780449529084 #Duplication Level Percentage of deduplicated Percentage of total 1 80.79329240502517 13.711252272002875 2 8.253817407842465 2.8014744619799146 3 2.466193834445527 1.2555970233107192 4 1.1188065004432504 0.7594807793811346 5 0.7228644257634577 0.6133786732203277 6 0.46117800461918423 0.46959303987264506 7 0.34311802273180647 0.4076086442440612 8 0.28670468902499757 0.38924818650349957 9 0.20613747750027797 0.3148482485769262 >10 2.3422220669772007 9.585514334383184 >50 1.1332835870395748 14.13939619901601 >100 1.8668296687914612 54.31349417704217 >500 0.004163932346746754 0.44330623963463334 >1k 6.939887244577924E-4 0.11812862868053592 >5k 6.939887244577924E-4 0.6776790921513496 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5754 0.6749116773560915 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1003 0.11764623086342714 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 968 0.1135409286897283 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05278245651898526 0.0 2 0.0 0.0 0.0 0.19259731912038622 0.0 3 0.0 0.0 0.0 0.2683694678120851 0.0 4 0.0 0.0 0.0 0.4396192156292373 0.0 5 0.0 0.0 0.0 0.7423559273525727 0.0 6 0.0 0.0 0.0 0.9853898160355449 0.0 7 0.0 0.0 0.0 1.1218031425501669 0.0 8 0.0 0.0 0.0 1.3703498655806774 0.0 9 0.0 0.0 0.0 1.4514002599242748 0.0 10 0.0 0.0 0.0 1.6751978755647723 0.0 11 0.0 0.0 0.0 1.9617479672889522 0.0 12 0.0 0.0 0.0 2.203374323798085 0.0 13 0.0 0.0 0.0 2.289820258141401 0.0 14 0.0 0.0 0.0 2.3238356190091913 0.0 15 0.0 0.0 0.0 2.3842422081364743 0.0 16 0.0 0.0 0.0 2.520890123346736 0.0 17 0.0 0.0 0.0 2.696245173337587 0.0 18 0.0 0.0 0.0 2.939396356368379 0.0 19 0.0 0.0 0.0 3.065839663318304 0.0 20 0.0 0.0 0.0 3.183720482877371 0.0 21 0.0 0.0 0.0 3.3567296459118228 0.0 22 0.0 0.0 0.0 3.5271583332942353 0.0 23 0.0 0.0 0.0 3.7310159098053384 0.0 24 0.0 0.0 0.0 3.863910405885361 0.0 25 0.0 0.0 0.0 3.978389689357649 0.0 26 0.0 0.0 0.0 4.093690033264677 0.0 27 0.0 0.0 0.0 4.199020357607008 0.0 28 0.0 0.0 0.0 4.318191414992095 0.0 29 0.0 0.0 0.0 4.44181965759434 0.0 30 0.0 0.0 0.0 4.593950426716837 0.0 31 0.0 0.0 0.0 4.749365437578294 0.0 32 0.0 0.0 0.0 4.880735107136657 0.0 33 0.0 0.0 0.0 5.000961813652124 0.0 34 0.0 0.0 0.0 5.132214188862667 0.0 35 0.0 0.0 0.0 5.312378307114137 0.0 36 0.0 0.0 0.0 5.456063883193597 0.0 37 0.0 0.0 0.0 5.616991728402592 0.0 38 0.0 0.0 0.0 5.764430723612291 0.0 39 0.0 0.0 0.0 5.913511839691469 0.0 40 0.0 0.0 0.0 6.081125462726202 0.0 41 0.0 0.0 0.0 6.23055846184884 0.0 42 0.0 0.0 0.0 6.380343344014938 0.0 43 0.0 0.0 0.0 6.5199236179207 0.0 44 0.0 0.0 0.0 6.676042394869076 0.0 45 0.0 0.0 0.0 6.839550715730111 0.0 46 0.0 0.0 0.0 7.0233509587639995 0.0 47 0.0 0.0 0.0 7.195656355711531 0.0 48 1.1729434781996725E-4 0.0 0.0 7.371128700050202 0.0 49 1.1729434781996725E-4 0.0 0.0 7.563139547431488 0.0 50 1.1729434781996725E-4 0.0 0.0 7.768521950464251 0.0 51 1.1729434781996725E-4 0.0 0.0 7.947278536541881 0.0 52 1.1729434781996725E-4 0.0 0.0 8.140579621749188 0.0 53 1.1729434781996725E-4 0.0 0.0 8.332355880434834 0.0 54 1.1729434781996725E-4 0.0 0.0 8.533515686946078 0.0 55 1.1729434781996725E-4 0.0 0.0 8.7386635012832 0.0 56 1.1729434781996725E-4 0.0 0.0 8.936304477359846 0.0 57 1.1729434781996725E-4 0.0 0.0 9.138285344305828 0.0 58 1.1729434781996725E-4 0.0 0.0 9.31047344690554 0.0 59 1.1729434781996725E-4 0.0 0.0 9.506003124721426 0.0 60 1.1729434781996725E-4 0.0 0.0 9.70739751992831 0.0 61 1.1729434781996725E-4 0.0 0.0 9.92157699904757 0.0 62 1.1729434781996725E-4 0.0 0.0 10.154758162513664 0.0 63 1.1729434781996725E-4 0.0 0.0 10.483065042061753 0.0 64 1.1729434781996725E-4 0.0 0.0 10.728444817701124 0.0 65 1.1729434781996725E-4 0.0 0.0 10.942155119429104 0.0 66 1.1729434781996725E-4 0.0 0.0 11.150352586809547 0.0 67 1.1729434781996725E-4 0.0 0.0 11.360192175059469 0.0 68 1.1729434781996725E-4 0.0 0.0 11.588564270264945 0.0 69 1.1729434781996725E-4 0.0 0.0 11.831715453295736 0.0 70 1.1729434781996725E-4 0.0 0.0 12.049179174153956 0.0 71 1.1729434781996725E-4 0.0 0.0 12.266173717620894 0.0 72 1.1729434781996725E-4 0.0 0.0 12.485514148044235 0.0 73 1.1729434781996725E-4 0.0 0.0 12.71529377542355 0.0 74 1.1729434781996725E-4 0.0 0.0 12.96947062714942 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 55 0.0 80.0 1 AATCCGG 20 4.0902938E-5 80.0 2 TGTTACG 15 0.0013096746 80.0 1 ACGTAAG 20 4.0902938E-5 80.0 1 TATCGTG 50 0.0 80.0 1 TACGTTG 40 4.1836756E-11 80.0 2 CGGGATC 220 0.0 78.181816 6 TACGCGG 130 0.0 76.92307 2 CGCTAGG 70 0.0 74.28571 2 ACCTCCG 65 0.0 73.84615 80 TGATGCG 60 0.0 73.33333 1 GCATAGG 310 0.0 72.258064 2 CGCATGG 45 1.1823431E-10 71.111115 2 GCGATAT 45 1.1823431E-10 71.111115 9 TTACGTT 45 1.1823431E-10 71.111115 1 GTACGGG 385 0.0 70.64935 3 CGTTTTT 3895 0.0 70.03851 1 TCGATAG 40 3.7125574E-9 70.0 1 ACGGGGC 160 0.0 70.0 5 TATAGCG 40 3.7125574E-9 70.0 1 >>END_MODULE