##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547817_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3026461 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.010702269085904 33.0 31.0 34.0 31.0 34.0 2 32.44996548774294 34.0 31.0 34.0 31.0 34.0 3 32.55604516298079 34.0 31.0 34.0 31.0 34.0 4 36.10113660807127 37.0 35.0 37.0 35.0 37.0 5 36.05998028720674 37.0 35.0 37.0 35.0 37.0 6 36.11268508003242 37.0 36.0 37.0 35.0 37.0 7 36.33851287031288 37.0 37.0 37.0 35.0 37.0 8 36.34624566449064 37.0 37.0 37.0 35.0 37.0 9 38.16022212082032 39.0 39.0 39.0 37.0 39.0 10-11 37.68112128324138 39.0 37.5 39.0 35.0 39.0 12-13 37.13123232052222 39.0 37.0 39.0 33.5 39.0 14-15 38.32904388987666 40.0 37.0 41.0 33.5 41.0 16-17 38.45499545508764 40.0 37.0 41.0 34.0 41.0 18-19 38.27396487184207 40.0 37.0 41.0 34.0 41.0 20-21 38.07418169274278 40.0 35.0 41.0 34.0 41.0 22-23 37.890670819812314 40.0 35.0 41.0 34.0 41.0 24-25 37.85985991559118 40.0 35.0 41.0 34.0 41.0 26-27 37.84535535068848 40.0 35.0 41.0 34.0 41.0 28-29 37.75296063620182 40.0 35.0 41.0 34.0 41.0 30-31 37.574098757591784 40.0 35.0 41.0 33.0 41.0 32-33 37.19820228973709 40.0 35.0 41.0 32.5 41.0 34-35 36.826463813675446 40.0 35.0 41.0 31.0 41.0 36-37 36.61576871468028 40.0 35.0 41.0 31.0 41.0 38-39 36.509336482446 39.5 35.0 41.0 30.5 41.0 40-41 36.38460928457363 39.0 35.0 41.0 30.0 41.0 42-43 36.320570792090166 39.0 35.0 41.0 30.0 41.0 44-45 36.16838892026033 39.0 35.0 41.0 30.0 41.0 46-47 36.01700567098007 39.0 35.0 41.0 29.0 41.0 48-49 35.907099579343665 39.0 35.0 41.0 29.0 41.0 50-51 35.66310188698945 38.0 35.0 40.0 28.5 41.0 52-53 35.45886928660241 38.0 35.0 40.0 28.0 41.0 54-55 35.25320811997908 37.5 35.0 40.0 27.5 41.0 56-57 34.953860796488044 37.0 34.5 40.0 26.5 41.0 58-59 34.68076740456923 36.5 34.0 40.0 26.0 41.0 60-61 34.32443305894244 36.0 34.0 39.0 26.0 41.0 62-63 33.94652384418633 35.5 33.5 39.0 25.5 40.5 64-65 33.58669482276494 35.0 33.0 38.5 24.5 40.0 66-67 33.27718183052747 35.0 33.0 38.0 23.5 40.0 68-69 32.809594936131674 35.0 33.0 37.0 21.5 39.5 70-71 32.50521450631612 35.0 33.0 36.5 20.5 39.0 72-73 32.25303844985942 35.0 33.0 36.0 20.0 39.0 74-75 31.95210924574941 35.0 32.5 36.0 20.0 37.5 76-77 30.03833107381856 33.0 29.5 34.5 17.5 36.0 78-79 31.090391714943625 34.0 31.5 35.0 18.5 36.0 80-81 31.226698609365855 35.0 32.0 35.0 18.5 36.0 82-83 31.042398365615814 34.5 32.0 35.0 18.0 36.0 84-85 30.83805870949601 34.0 31.5 35.0 17.0 36.0 86 30.43590451025141 34.0 31.0 35.0 15.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 6.0 10 11.0 11 21.0 12 38.0 13 130.0 14 486.0 15 1342.0 16 3653.0 17 8796.0 18 19052.0 19 29413.0 20 32901.0 21 30966.0 22 26123.0 23 22310.0 24 21371.0 25 22916.0 26 26508.0 27 31636.0 28 38219.0 29 47491.0 30 58927.0 31 74084.0 32 90846.0 33 117980.0 34 281654.0 35 268210.0 36 267585.0 37 503087.0 38 716261.0 39 283839.0 40 593.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.923960692042623 24.05872733863083 30.443280121567735 15.574031847758818 2 31.6981451272625 25.414502285012098 30.034221488398494 12.853131099326903 3 28.098660448622997 23.89982887603706 34.90314264746844 13.098368027871498 4 26.123713472600507 26.54070216004766 33.41080555804288 13.924778809308958 5 24.34615876431251 30.39527025129351 31.7580500789536 13.50052090544038 6 21.784685148759557 39.787725663737284 27.88150912897936 10.5460800585238 7 87.30874113362108 3.405660935330077 7.768776799040198 1.5168211320086398 8 88.55128151329225 2.5557573680942856 7.440274300577474 1.4526868180359833 9 84.57055947524188 4.818730523869299 8.58553934777286 2.0251706531159663 10-11 36.11234375727954 28.465375896137434 21.78038970269235 13.641890643890669 12-13 27.83779470477234 24.264165307268126 29.61857099761074 18.279468990348793 14-15 18.48399830693341 30.179985798594466 33.469884462413354 17.866131432058765 16-17 23.731463911149028 26.225614670071746 31.63757933771491 18.40534208106432 18-19 24.19897365272508 28.53560643933624 29.681961868994843 17.583458038943835 20-21 26.568226056770598 27.468055924064444 29.797261554006475 16.16645646515848 22-23 22.88058560807491 23.96383102243842 32.20517297265684 20.95041039682983 24-25 20.682655418325233 27.487616724616636 32.77316311031267 19.056564746745455 26-27 20.079326976293434 31.73199654646136 29.3407051999018 18.847971277343404 28-29 18.753521026704128 28.128464235950833 33.6878453084312 19.43016942891384 30-31 22.336765615020315 27.426059678284304 31.10487794159581 19.132296765099564 32-33 24.354848782125394 27.64076589785892 29.018067637415452 18.986317682600237 34-35 21.328806153457787 27.79249426970974 29.940316428990826 20.938383147841655 36-37 22.42635870741437 29.17645395067044 29.140140910456143 19.257046431459056 38-39 21.3106000705114 29.909934408538554 27.846782099620647 20.9326834213294 40-41 21.501251792109663 27.139834281690728 29.135415919782215 22.223498006417397 42-43 21.218974901708627 27.312808590627803 28.30543661391969 23.16277989374388 44-45 20.826040712237827 29.360645982221477 28.305981805151298 21.507331500389398 46-47 21.598461040799798 29.005197820160245 27.88154217087218 21.51479896816777 48-49 21.57249011303962 27.12539497452635 30.38620025171314 20.915914660720887 50-51 20.291753305263143 28.927764144325668 29.43439548700611 21.34608706340508 52-53 22.01493757890817 26.584697440343692 29.502709600421085 21.897655380327055 54-55 21.741036808338187 27.132713753787012 30.028059175386694 21.0981902624881 56-57 22.09251994326046 26.657703502539764 28.99279058940459 22.256985964795184 58-59 22.953542107431748 27.304548117421636 28.566930153734017 21.1749796214126 60-61 23.16172255317349 29.207893311693095 27.31759966508737 20.31278447004604 62-63 23.136015960555913 26.906277662259647 29.249839994633998 20.707866382550442 64-65 21.3356623462189 29.10044107622732 29.30634163136416 20.257554946189625 66-67 20.119951983521347 28.97299849560262 27.118175320944164 23.78887419993187 68-69 20.134622583935492 30.60530104303343 26.87287230861392 22.38720406441715 70-71 20.675171429600447 29.09102413677229 28.66770792684921 21.56609650677805 72-73 22.159776716105046 29.581151053986822 27.20776841333822 21.051303816569913 74-75 21.16518270019009 30.219536944305574 26.414333440939764 22.200946914564568 76-77 23.078572629880245 28.263159512050546 27.301078718675047 21.357189139394166 78-79 19.879208752400906 28.866223618939745 28.968141337357395 22.286426291301954 80-81 19.148669022994184 28.329061567289322 28.934108187748 23.588161221968498 82-83 20.5996541835497 28.371404752944112 28.81553735534672 22.213403708159465 84-85 18.99560245448397 27.996643604526874 28.53869585631535 24.469058084673815 86 20.00359495793932 28.488587825846757 28.745191165523032 22.76262605069089 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1122.0 1 1226.5 2 6674.5 3 7874.0 4 3929.0 5 4513.0 6 5410.5 7 5923.0 8 5983.0 9 6287.0 10 6546.0 11 6723.0 12 7083.0 13 7589.5 14 7898.0 15 8061.5 16 8212.0 17 8333.5 18 8942.5 19 9451.0 20 9480.0 21 9475.0 22 10051.0 23 11238.5 24 13423.5 25 16332.5 26 18660.0 27 21979.5 28 27614.5 29 30922.0 30 35293.5 31 44554.0 32 50330.5 33 55663.5 34 64817.0 35 72912.0 36 76299.0 37 76979.0 38 86970.0 39 99341.5 40 107163.5 41 120113.5 42 131394.5 43 134487.0 44 139167.0 45 148602.0 46 160402.0 47 168595.0 48 169945.0 49 160638.0 50 151129.0 51 136851.5 52 116650.0 53 109744.5 54 101373.0 55 87430.5 56 76941.0 57 73004.0 58 63694.5 59 48438.5 60 36756.5 61 28767.5 62 23455.0 63 17104.0 64 13812.0 65 12104.0 66 9114.0 67 6740.5 68 4942.5 69 3613.0 70 2301.0 71 1612.0 72 1639.5 73 1297.0 74 800.0 75 630.0 76 435.0 77 232.0 78 147.5 79 114.0 80 89.0 81 46.5 82 22.0 83 9.0 84 4.5 85 7.5 86 9.0 87 6.5 88 2.0 89 1.5 90 2.0 91 1.5 92 1.0 93 0.0 94 1.5 95 1.5 96 0.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 3026461.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.047876534363063 #Duplication Level Percentage of deduplicated Percentage of total 1 79.78873065307161 14.400171596601854 2 8.080685335558 2.916784224983779 3 2.6074354695430064 1.4117602027689347 4 1.2636053095780835 0.9122157046172344 5 0.7902403763453331 0.7131080372374585 6 0.5296872850633965 0.5735838433587689 7 0.4122421349250267 0.5208066607372385 8 0.3152140227007747 0.45511550108827975 9 0.28144849419371987 0.457159290659159 >10 3.138825656647859 13.573221848769201 >50 1.2623154858039107 16.492129031054866 >100 1.5208590377280073 45.52268362254034 >500 0.007598729627548154 0.898440363632401 >1k 9.266743448229456E-4 0.2963916627753799 >5k 0.0 0.0 >10k+ 1.853348689645891E-4 0.8564284091751301 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25604 0.8460046238824818 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.3041892824655595E-5 0.0 0.0 0.02018859651586457 0.0 2 3.3041892824655595E-5 0.0 0.0 0.08068830227780896 0.0 3 3.3041892824655595E-5 0.0 0.0 0.13986633232676715 0.0 4 3.3041892824655595E-5 0.0 0.0 0.24807853132751423 0.0 5 3.3041892824655595E-5 0.0 0.0 0.4907051503389603 0.0 6 3.3041892824655595E-5 0.0 0.0 0.7322413868871926 0.0 7 3.3041892824655595E-5 0.0 0.0 0.8913381008379093 0.0 8 3.3041892824655595E-5 0.0 0.0 1.1516421325105461 0.0 9 3.3041892824655595E-5 0.0 0.0 1.2575083571207426 0.0 10 3.3041892824655595E-5 0.0 0.0 1.4359345783738828 0.0 11 3.3041892824655595E-5 0.0 0.0 1.7162950389910856 0.0 12 3.3041892824655595E-5 0.0 0.0 1.9192053028272957 0.0 13 3.3041892824655595E-5 0.0 0.0 1.9999596888907538 0.0 14 3.3041892824655595E-5 0.0 0.0 2.0364379385691738 0.0 15 3.3041892824655595E-5 0.0 0.0 2.0877850400186886 0.0 16 3.3041892824655595E-5 0.0 0.0 2.19510510791317 0.0 17 3.3041892824655595E-5 0.0 0.0 2.3293543184597456 0.0 18 3.3041892824655595E-5 0.0 0.0 2.4926143109063688 0.0 19 3.3041892824655595E-5 0.0 0.0 2.6035689870115624 0.0 20 3.3041892824655595E-5 0.0 0.0 2.7230815133583417 0.0 21 3.3041892824655595E-5 0.0 0.0 2.874149047352667 0.0 22 6.608378564931119E-5 0.0 0.0 3.0425635750799365 0.0 23 6.608378564931119E-5 0.0 0.0 3.222774058545608 0.0 24 6.608378564931119E-5 0.0 0.0 3.355569425807899 0.0 25 6.608378564931119E-5 0.0 0.0 3.4814920793626616 0.0 26 6.608378564931119E-5 0.0 0.0 3.5970395785704823 0.0 27 6.608378564931119E-5 0.0 0.0 3.7246473686593022 0.0 28 6.608378564931119E-5 0.0 0.0 3.8572114426718205 0.0 29 6.608378564931119E-5 0.0 0.0 4.0158125282301675 0.0 30 6.608378564931119E-5 0.0 0.0 4.179336855819388 0.0 31 6.608378564931119E-5 0.0 0.0 4.3357241345584825 0.0 32 6.608378564931119E-5 0.0 0.0 4.478894656167715 0.0 33 6.608378564931119E-5 0.0 0.0 4.632341206445416 0.0 34 6.608378564931119E-5 0.0 0.0 4.789058904112758 0.0 35 6.608378564931119E-5 0.0 0.0 4.9694015551497275 0.0 36 6.608378564931119E-5 0.0 0.0 5.131835500275734 0.0 37 9.912567847396678E-5 0.0 0.0 5.307618370102903 0.0 38 1.3216757129862238E-4 0.0 0.0 5.493941603741136 0.0 39 1.3216757129862238E-4 0.0 0.0 5.730851975293916 0.0 40 1.3216757129862238E-4 0.0 0.0 5.932704898559737 0.0 41 1.3216757129862238E-4 0.0 0.0 6.135218659682051 0.0 42 1.3216757129862238E-4 0.0 0.0 6.33819500730391 0.0 43 1.3216757129862238E-4 0.0 0.0 6.533406510111976 0.0 44 1.65209464123278E-4 0.0 0.0 6.7187054450726444 0.0 45 1.9825135694793357E-4 0.0 0.0 6.899741975858932 0.0 46 1.9825135694793357E-4 0.0 0.0 7.103544370801408 0.0 47 2.3129324977258918E-4 0.0 0.0 7.3164663281634885 0.0 48 2.3129324977258918E-4 0.0 0.0 7.523440744817131 0.0 49 2.6433514259724476E-4 0.0 0.0 7.72839960600847 0.0 50 2.6433514259724476E-4 0.0 0.0 7.941189395799252 0.0 51 2.6433514259724476E-4 0.0 0.0 8.151236708485587 0.0 52 2.6433514259724476E-4 0.0 0.0 8.394325913996578 0.0 53 2.9737703542190037E-4 0.0 0.0 8.610816395783722 0.0 54 2.9737703542190037E-4 0.0 0.0 8.828066841105834 0.0 55 3.30418928246556E-4 0.0 0.0 9.044524281000152 0.0 56 3.30418928246556E-4 0.0 0.0 9.274991483452125 0.0 57 3.634608210712116E-4 0.0 0.0 9.49951114519566 0.0 58 3.634608210712116E-4 0.0 0.0 9.718942355444197 0.0 59 4.2954460672052275E-4 0.0 0.0 9.957273528388438 0.0 60 4.2954460672052275E-4 0.0 0.0 10.192928308013881 0.0 61 4.2954460672052275E-4 0.0 0.0 10.44097379744857 0.0 62 4.6258649954517835E-4 0.0 0.0 10.71251207268159 0.0 63 4.956283923698339E-4 0.0 0.0 10.972485685425982 0.0 64 4.956283923698339E-4 0.0 0.0 11.228659480495535 0.0 65 4.956283923698339E-4 0.0 0.0 11.473764241468832 0.0 66 4.956283923698339E-4 0.0 0.0 11.709749440022522 0.0 67 4.956283923698339E-4 0.0 0.0 11.95601066724468 0.0 68 4.956283923698339E-4 0.0 0.0 12.241889123963599 0.0 69 4.956283923698339E-4 0.0 0.0 12.603268305786859 0.0 70 5.947540708438007E-4 0.0 0.0 12.874277910734683 0.0 71 5.947540708438007E-4 0.0 0.0 13.132136842338296 0.0 72 5.947540708438007E-4 0.0 0.0 13.390028815834732 0.0 73 5.947540708438007E-4 0.0 0.0 13.64699561633208 0.0 74 6.277959636684563E-4 0.0 0.0 13.93039593108915 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 14900 0.0 74.657715 1 CGTAAGG 615 0.0 65.691055 2 TACGGGA 1340 0.0 65.37314 4 CCGATCC 2290 0.0 65.15284 80 GCGTAAG 300 0.0 64.0 1 TAGGGCG 775 0.0 63.999996 5 TAAGGGA 4410 0.0 63.764175 4 CGAGGGA 2305 0.0 63.687637 4 GGGCGAT 2180 0.0 63.486237 7 TTGCGGG 2285 0.0 62.14442 3 GTACGGG 1105 0.0 61.53846 3 TATGGGA 3680 0.0 60.76087 4 TGCGGGA 2445 0.0 60.2045 4 AGGGATC 3880 0.0 60.103092 6 TAACGGG 1045 0.0 59.71292 3 TAGGGAT 4980 0.0 59.678715 5 GTAGGGA 5480 0.0 59.635036 4 ACGGGAT 1620 0.0 59.50617 5 TAGGGAC 3500 0.0 59.42857 5 GGCGATA 540 0.0 59.25926 8 >>END_MODULE