##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547810_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1528190 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.760273918818996 31.0 31.0 33.0 30.0 34.0 2 32.19287981206525 33.0 31.0 34.0 30.0 34.0 3 32.34707660696641 34.0 31.0 34.0 30.0 34.0 4 35.95093672907165 37.0 35.0 37.0 35.0 37.0 5 35.89998233203986 37.0 35.0 37.0 35.0 37.0 6 35.9476485253797 37.0 35.0 37.0 35.0 37.0 7 36.20939411984112 37.0 35.0 37.0 35.0 37.0 8 36.1555807851118 37.0 35.0 37.0 35.0 37.0 9 38.022255086082225 39.0 39.0 39.0 35.0 39.0 10-11 37.49765147003972 39.0 37.0 39.0 35.0 39.0 12-13 36.547241835112125 39.0 35.0 39.0 33.0 39.0 14-15 37.50003664465806 40.0 35.0 41.0 33.0 41.0 16-17 37.723669504446434 40.0 35.0 41.0 33.0 41.0 18-19 37.63088130402633 39.0 35.5 41.0 33.0 41.0 20-21 37.41764080382675 39.0 35.0 41.0 33.0 41.0 22-23 37.21888933967635 39.0 35.0 41.0 33.0 41.0 24-25 37.13114010692388 39.0 35.0 41.0 33.0 41.0 26-27 37.10006510970494 39.0 35.0 41.0 33.0 41.0 28-29 37.106493956903265 39.0 35.0 41.0 33.0 41.0 30-31 36.94699644677691 39.0 35.0 41.0 32.5 41.0 32-33 36.632715500035985 38.0 35.0 41.0 31.5 41.0 34-35 36.35663104718654 38.0 35.0 41.0 31.0 41.0 36-37 36.166685425241624 38.0 35.0 41.0 30.0 41.0 38-39 36.088381025919546 38.0 35.0 41.0 30.0 41.0 40-41 35.93872980454002 38.0 35.0 40.5 30.0 41.0 42-43 35.89764492635078 38.0 35.0 41.0 30.0 41.0 44-45 35.82009959494566 38.0 35.0 40.0 30.0 41.0 46-47 35.73931939091344 38.0 35.0 40.0 30.0 41.0 48-49 35.64050118113585 37.0 35.0 40.0 29.5 41.0 50-51 35.448699114638885 37.0 35.0 40.0 29.0 41.0 52-53 35.28382956307789 36.5 34.5 40.0 29.0 41.0 54-55 35.08153403699802 36.0 34.0 40.0 28.5 41.0 56-57 34.75874138686943 36.0 34.0 40.0 27.5 41.0 58-59 34.46118283721265 35.0 34.0 39.0 26.0 41.0 60-61 34.16459962439225 35.0 34.0 39.0 26.0 41.0 62-63 33.72908342549029 35.0 33.0 39.0 25.5 40.0 64-65 33.46814990282622 35.0 33.0 38.0 25.0 40.0 66-67 33.22151205020318 35.0 33.0 37.0 25.0 40.0 68-69 32.83203593793965 35.0 33.0 37.0 23.5 39.5 70-71 32.59478893331327 35.0 33.0 36.0 23.5 39.0 72-73 32.37235225986298 35.0 33.0 36.0 23.0 39.0 74-75 32.073541902512126 35.0 32.0 35.5 21.5 37.5 76-77 30.04797407390442 33.0 29.5 34.5 18.5 36.0 78-79 31.111826736204268 34.0 30.5 35.0 19.5 36.0 80-81 31.420209201735386 35.0 32.0 35.0 20.0 36.0 82-83 31.281998311728252 35.0 32.0 35.0 19.5 36.0 84-85 31.07986441476518 34.0 32.0 35.0 19.0 36.0 86 30.662470635195884 34.0 31.0 35.0 18.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 8.0 10 9.0 11 10.0 12 31.0 13 78.0 14 241.0 15 716.0 16 1779.0 17 3840.0 18 7119.0 19 10470.0 20 12508.0 21 12684.0 22 11632.0 23 10868.0 24 11626.0 25 13328.0 26 15892.0 27 19301.0 28 23434.0 29 29647.0 30 36493.0 31 44486.0 32 56282.0 33 75653.0 34 190882.0 35 175933.0 36 129218.0 37 219043.0 38 281643.0 39 132616.0 40 718.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.261505441077354 23.437596110431294 29.273061595743982 14.027836852747368 2 30.23230095734169 25.075677762581876 31.195662842971096 13.496358437105332 3 29.15946315575943 25.071031743435046 32.34879170783738 13.420713392968153 4 25.733972869865656 27.63262421557529 31.989412311296373 14.643990603262683 5 24.69948108546712 31.858080474286577 29.230265870081602 14.212172570164705 6 22.526125678089766 40.76325587786859 25.98629751536131 10.724320928680333 7 87.81453876808511 3.712692793435371 6.860141736302423 1.6126267021770853 8 87.95843448785818 3.3368233007675747 6.608275149032515 2.0964670623417248 9 83.57841629640293 5.950896158200224 7.806882652026253 2.663804893370589 10-11 41.76813746981723 27.060771239178372 19.40782886944686 11.763262421557528 12-13 32.33020763125004 26.282497595194314 25.432505120436595 15.95478965311905 14-15 15.54119579371675 33.401671258155076 34.56144196729464 16.495690980833537 16-17 20.534488512554066 25.736524908551946 33.40919650043516 20.31979007845883 18-19 24.102434906654278 28.043404288733733 29.571617403595102 18.28254340101689 20-21 26.812012904154585 28.654486680321163 28.599748722344735 15.933751693179513 22-23 22.132653662175514 25.495422689587027 30.09288766449198 22.279035983745477 24-25 19.528003716815316 26.99458182555834 35.18894901811947 18.28846543950687 26-27 17.290454720944386 35.75566519869911 28.77145512010941 18.18242496024709 28-29 15.992710330521728 29.651973903768507 35.57119860750299 18.78411715820677 30-31 21.974198234512723 30.016457377682094 29.631426720499416 18.37791766730577 32-33 26.398419044752288 28.59062027627455 27.367702968871672 17.643257710101494 34-35 19.545148181836026 28.765762110732307 30.019990969709266 21.669098737722404 36-37 23.07628632565322 30.168434553295075 29.380345375902213 17.37493374514949 38-39 19.583723228132627 31.767581256257404 28.010849436261196 20.637846079348773 40-41 20.56203744298811 27.419136363933806 28.677651339165944 23.341174853912143 42-43 20.095930479848708 26.484599428081584 28.98199831172825 24.43747178034145 44-45 18.863688415707472 32.33537714551201 27.453719759977492 21.347214678803027 46-47 20.456553177288164 31.804749409432077 26.844011543067285 20.894685870212474 48-49 20.909703636327944 27.69760304674157 31.178845562397346 20.21384775453314 50-51 18.885544336764408 31.819014651319534 28.00374953376216 21.291691478153897 52-53 21.520818746360074 28.069480889156452 29.414208966162587 20.99549139832089 54-55 22.968511768824555 27.254824334670424 30.139053389958054 19.63761050654696 56-57 22.699500716533937 26.207179735504095 28.604231149268088 22.48908839869388 58-59 23.934687440697818 27.727834889640686 27.57723188870494 20.760245780956556 60-61 24.61909186684902 29.751012635863344 26.427505742087043 19.202389755200596 62-63 23.24710932541111 26.470203312415343 30.794861895444935 19.487825466728616 64-65 19.321386738559994 31.149955175730764 29.891407482053932 19.637250603655303 66-67 18.375398347064174 29.70932933732062 25.068479704748754 26.846792610866448 68-69 17.648394505918766 33.063722442889954 24.714531570027287 24.57335148116399 70-71 18.818046185356533 30.446443177877097 28.929027149765407 21.806483487000964 72-73 21.988986971515324 31.139223525870474 26.2448713837939 20.626918118820303 74-75 21.59378087803218 32.61184800319332 23.879458706050947 21.91491241272355 76-77 25.804971894856006 29.682205746667627 24.798748846674826 19.714073511801544 78-79 18.94106753741354 30.270123479410284 29.599657110699585 21.18915187247659 80-81 16.418475451350943 29.166693932037248 30.52182647445671 23.8930041421551 82-83 18.39273912275306 27.57746091781781 31.448510983581883 22.581288975847244 84-85 16.466669720388172 28.015004678737593 29.04079335684699 26.477532244027245 86 18.113781663274857 27.62588421596791 30.609610061576113 23.650724059181123 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1450.0 1 1660.0 2 3987.0 3 3963.5 4 2079.5 5 2875.5 6 3725.5 7 4036.0 8 4331.5 9 4459.0 10 4164.0 11 3738.0 12 3540.5 13 3570.0 14 3498.0 15 3490.5 16 3555.5 17 3635.5 18 3983.5 19 4391.5 20 4742.5 21 5026.0 22 5393.0 23 5763.5 24 6298.5 25 7516.0 26 8858.0 27 11944.5 28 15506.0 29 16637.0 30 18397.5 31 20983.5 32 24575.0 33 28351.5 34 33488.5 35 37701.0 36 37787.0 37 39749.5 38 45440.0 39 50279.5 40 57460.5 41 67012.5 42 75163.0 43 79831.0 44 80668.0 45 83499.5 46 88052.0 47 92244.0 48 89814.0 49 79857.5 50 73965.0 51 64818.5 52 50744.5 53 43188.5 54 39465.0 55 37625.5 56 34994.5 57 33108.0 58 29432.0 59 21525.0 60 15495.5 61 13275.0 62 11185.0 63 8160.5 64 6804.0 65 5524.5 66 3605.5 67 2680.0 68 1948.5 69 1224.5 70 792.0 71 638.0 72 541.5 73 424.5 74 381.5 75 226.0 76 109.5 77 82.0 78 35.5 79 33.0 80 25.0 81 12.0 82 6.5 83 5.5 84 6.0 85 7.0 86 7.0 87 4.0 88 1.0 89 1.0 90 1.0 91 0.5 92 0.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1528190.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.01773486969811 #Duplication Level Percentage of deduplicated Percentage of total 1 80.5827395770365 14.519184367729727 2 8.484146679418918 3.0573021093079933 3 2.456072889118173 1.3275861041035406 4 1.1393449497360328 0.8211366091789343 5 0.6927601039785505 0.6240983940895009 6 0.4906478179709272 0.5304217379157641 7 0.3887346986754235 0.49028831147700364 8 0.2985083821699102 0.43027559090559686 9 0.2558846244871394 0.41494151891173847 >10 2.423671449705829 10.248146789262297 >50 1.1111224987915775 14.559168901014566 >100 1.6679625744287028 51.17717178556242 >500 0.006576851334001457 0.8026397535418262 >1k 0.0014615225186669905 0.4013857100840316 >5k 3.653806296667476E-4 0.5962523169150524 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9057 0.5926619072235783 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2018 0.1320516427931082 No Hit AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAAAGGAAAGGAAAGGAAAGG 1579 0.10332484835000884 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.543688939202586E-5 0.0 0.0 0.05261125907118879 0.0 2 6.543688939202586E-5 0.0 0.0 0.1860370765415295 0.0 3 6.543688939202586E-5 0.0 0.0 0.2674405669452097 0.0 4 6.543688939202586E-5 0.0 0.0 0.4008009475261584 0.0 5 6.543688939202586E-5 0.0 0.0 0.6724294753924578 0.0 6 6.543688939202586E-5 0.0 0.0 0.9001498504767077 0.0 7 6.543688939202586E-5 0.0 0.0 1.0468593564936297 0.0 8 6.543688939202586E-5 0.0 0.0 1.343353902328899 0.0 9 6.543688939202586E-5 0.0 0.0 1.4356199163716554 0.0 10 6.543688939202586E-5 0.0 0.0 1.6009789358653046 0.0 11 6.543688939202586E-5 0.0 0.0 1.9159921213985172 0.0 12 6.543688939202586E-5 0.0 0.0 2.1242777403333357 0.0 13 6.543688939202586E-5 0.0 0.0 2.203783560944647 0.0 14 6.543688939202586E-5 0.0 0.0 2.2383996754330284 0.0 15 6.543688939202586E-5 0.0 0.0 2.294871710978347 0.0 16 6.543688939202586E-5 0.0 0.0 2.411741995432505 0.0 17 6.543688939202586E-5 0.0 0.0 2.5524313076253606 0.0 18 6.543688939202586E-5 0.0 0.0 2.712359065299472 0.0 19 6.543688939202586E-5 0.0 0.0 2.8220312919205073 0.0 20 6.543688939202586E-5 0.0 0.0 2.9419771101760905 0.0 21 6.543688939202586E-5 0.0 0.0 3.0977823438185044 0.0 22 6.543688939202586E-5 0.0 0.0 3.2552234996957186 0.0 23 6.543688939202586E-5 0.0 0.0 3.4228073734286966 0.0 24 6.543688939202586E-5 0.0 0.0 3.550605618411323 0.0 25 6.543688939202586E-5 0.0 0.0 3.6625026992716876 0.0 26 6.543688939202586E-5 0.0 0.0 3.7827757019742307 0.0 27 6.543688939202586E-5 0.0 0.0 3.9029178308979904 0.0 28 6.543688939202586E-5 0.0 0.0 4.037717823045564 0.0 29 6.543688939202586E-5 0.0 0.0 4.194046551803114 0.0 30 6.543688939202586E-5 0.0 0.0 4.371773143391856 0.0 31 6.543688939202586E-5 0.0 0.0 4.535234493093136 0.0 32 6.543688939202586E-5 0.0 0.0 4.6799154555389055 0.0 33 6.543688939202586E-5 0.0 0.0 4.832056223375366 0.0 34 6.543688939202586E-5 0.0 0.0 4.998135048652327 0.0 35 6.543688939202586E-5 0.0 0.0 5.176777756692558 0.0 36 6.543688939202586E-5 0.0 0.0 5.33997735883627 0.0 37 6.543688939202586E-5 0.0 0.0 5.510702203260066 0.0 38 6.543688939202586E-5 0.0 0.0 5.705704133648303 0.0 39 6.543688939202586E-5 0.0 0.0 6.006321203515269 0.0 40 6.543688939202586E-5 0.0 0.0 6.213298084662248 0.0 41 6.543688939202586E-5 0.0 0.0 6.423088752053083 0.0 42 6.543688939202586E-5 0.0 0.0 6.627513594513771 0.0 43 6.543688939202586E-5 0.0 0.0 6.8037351376464965 0.0 44 6.543688939202586E-5 0.0 0.0 6.996970272021149 0.0 45 6.543688939202586E-5 0.0 0.0 7.196421910888044 0.0 46 6.543688939202586E-5 0.0 0.0 7.410727723646929 0.0 47 6.543688939202586E-5 0.0 0.0 7.637270234722123 0.0 48 6.543688939202586E-5 0.0 0.0 7.85262303771128 0.0 49 6.543688939202586E-5 0.0 0.0 8.0674523455853 0.0 50 6.543688939202586E-5 0.0 0.0 8.305642622972274 0.0 51 6.543688939202586E-5 0.0 0.0 8.545599696372832 0.0 52 6.543688939202586E-5 0.0 0.0 8.82455715585104 0.0 53 1.3087377878405172E-4 0.0 0.0 9.061765879897132 0.0 54 1.963106681760776E-4 0.0 0.0 9.31906372898658 0.0 55 1.963106681760776E-4 0.0 0.0 9.561834588630996 0.0 56 1.963106681760776E-4 0.0 0.0 9.804081953160274 0.0 57 1.963106681760776E-4 0.0 0.0 10.054116307527206 0.0 58 1.963106681760776E-4 0.0 0.0 10.284388721297745 0.0 59 1.963106681760776E-4 0.0 0.0 10.534161328107107 0.0 60 1.963106681760776E-4 0.0 0.0 10.815474515603427 0.0 61 1.963106681760776E-4 0.0 0.0 11.084878189230396 0.0 62 1.963106681760776E-4 0.0 0.0 11.390206715133589 0.0 63 2.6174755756810345E-4 0.0 0.0 11.726421452829818 0.0 64 3.271844469601293E-4 0.0 0.0 12.025860658687728 0.0 65 3.926213363521552E-4 0.0 0.0 12.323794816089622 0.0 66 3.926213363521552E-4 0.0 0.0 12.58665480077739 0.0 67 3.926213363521552E-4 0.0 0.0 12.858675949980041 0.0 68 3.926213363521552E-4 0.0 0.0 13.197050105026207 0.0 69 3.926213363521552E-4 0.0 0.0 13.655959010332484 0.0 70 3.926213363521552E-4 0.0 0.0 13.958277439323645 0.0 71 3.926213363521552E-4 0.0 0.0 14.250714898016607 0.0 72 3.926213363521552E-4 0.0 0.0 14.53889895889909 0.0 73 3.926213363521552E-4 0.0 0.0 14.833037776716246 0.0 74 3.926213363521552E-4 0.0 0.0 15.166307854389833 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGGG 440 0.0 73.63636 3 CGTTTTT 4380 0.0 72.42009 1 TAGTGCG 50 3.6379788E-12 72.0 1 TGTTGCG 140 0.0 68.57143 1 TGTTCGG 70 0.0 68.57143 2 TTGCGGG 1240 0.0 68.06452 3 TTAGGGA 2090 0.0 67.94258 4 CTAACGG 130 0.0 67.69231 2 GACGGGT 255 0.0 67.45097 4 AGGGATT 2725 0.0 66.642204 6 TACGGGA 535 0.0 66.54206 4 GTATGCG 55 9.094947E-12 65.454544 1 GCGATGA 215 0.0 65.11628 9 AACGGGA 590 0.0 65.08475 4 CTATGCG 80 0.0 65.0 1 CTTGCGG 260 0.0 64.61539 2 GTACGGG 585 0.0 64.2735 3 ATGGGAC 1090 0.0 64.220184 5 GCGCGAC 50 3.0013325E-10 64.0 9 CGTTAGG 175 0.0 64.0 2 >>END_MODULE