##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547809_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1297654 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.655915213146184 31.0 31.0 33.0 30.0 34.0 2 32.08237172620745 33.0 31.0 34.0 30.0 34.0 3 32.230154571249344 33.0 31.0 34.0 30.0 34.0 4 35.8556217605001 37.0 35.0 37.0 35.0 37.0 5 35.78021876401568 37.0 35.0 37.0 35.0 37.0 6 35.85824880900456 37.0 35.0 37.0 35.0 37.0 7 36.186565910481534 37.0 35.0 37.0 35.0 37.0 8 36.132616244391805 37.0 35.0 37.0 35.0 37.0 9 37.975155935249305 39.0 39.0 39.0 35.0 39.0 10-11 37.37026780636441 39.0 37.0 39.0 34.5 39.0 12-13 36.630721671570385 39.0 35.0 39.0 33.0 39.0 14-15 37.58435646173787 40.0 35.0 41.0 33.0 41.0 16-17 37.78149529843857 40.0 35.0 41.0 33.0 41.0 18-19 37.712973566143205 39.0 36.0 41.0 33.0 41.0 20-21 37.49819751644121 39.0 35.0 41.0 33.0 41.0 22-23 37.316727725572456 39.0 35.0 41.0 32.5 41.0 24-25 37.21365017177152 39.0 35.0 41.0 32.5 41.0 26-27 37.18318635013648 39.0 35.0 41.0 33.0 41.0 28-29 37.16726068736351 39.0 35.0 41.0 33.0 41.0 30-31 36.96992071846579 39.0 35.0 41.0 32.0 41.0 32-33 36.68399781451758 39.0 35.0 41.0 31.0 41.0 34-35 36.412903208405325 38.0 35.0 41.0 31.0 41.0 36-37 36.218742052966356 38.0 35.0 41.0 30.0 41.0 38-39 36.131505778890215 38.0 35.0 41.0 30.0 41.0 40-41 35.96290074241669 38.0 35.0 41.0 30.0 41.0 42-43 35.9134565146025 38.0 35.0 41.0 30.0 41.0 44-45 35.76958804118817 38.0 35.0 40.0 29.5 41.0 46-47 35.68274748122381 38.0 35.0 40.0 29.0 41.0 48-49 35.559958586803575 37.5 35.0 40.0 29.0 41.0 50-51 35.34920595166354 37.0 34.5 40.0 28.0 41.0 52-53 35.17235064200472 37.0 34.0 40.0 28.0 41.0 54-55 34.952952790189066 36.5 34.0 40.0 27.0 41.0 56-57 34.583602023343666 36.0 34.0 40.0 26.0 41.0 58-59 34.217713273337885 35.5 34.0 39.0 25.5 41.0 60-61 33.83712376334523 35.0 33.0 39.0 24.5 40.5 62-63 33.32910275003969 35.0 32.5 38.5 22.5 40.0 64-65 32.81450872112289 35.0 32.0 37.5 21.5 40.0 66-67 32.398044856333044 35.0 32.0 37.0 19.5 40.0 68-69 31.856020942408378 35.0 31.5 36.5 17.5 39.0 70-71 31.489395478301613 35.0 31.0 36.0 16.0 39.0 72-73 31.15185904717282 35.0 31.0 35.5 13.0 38.5 74-75 30.81894095036119 35.0 31.0 35.0 11.5 37.0 76-77 28.828860389595377 32.5 27.5 34.5 10.0 35.5 78-79 29.84751212572843 34.0 29.0 35.0 10.0 36.0 80-81 29.986696762002815 34.0 30.0 35.0 10.0 36.0 82-83 29.73915273254658 34.0 29.0 35.0 10.0 36.0 84-85 29.50232612083036 34.0 29.0 35.0 10.0 35.0 86 29.109225571685517 34.0 29.0 35.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 7.0 11 13.0 12 14.0 13 53.0 14 209.0 15 548.0 16 1401.0 17 3347.0 18 6085.0 19 8559.0 20 9895.0 21 10530.0 22 10250.0 23 10653.0 24 12179.0 25 14801.0 26 17818.0 27 21939.0 28 26791.0 29 33202.0 30 40830.0 31 48662.0 32 55813.0 33 67894.0 34 143499.0 35 134900.0 36 113913.0 37 180228.0 38 225616.0 39 97695.0 40 307.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.329804400864944 24.583825888873307 28.939147107010033 14.147222603251713 2 29.8935617660794 25.643045064400834 31.315435393409953 13.147957776109811 3 30.000446960437838 24.04169370263568 32.687295688989515 13.270563647936969 4 28.493342601340572 26.157974313646008 31.830749953377403 13.517933131636015 5 22.935235432557523 32.4141103868982 30.05462164798937 14.596032532554904 6 22.017502354248514 41.26192344030073 25.960232850975686 10.760341354475075 7 87.10696379774578 3.6565987543674967 7.153987118291933 2.0824503295947916 8 86.6650894614435 3.3487354872716457 7.393033890389889 2.593141160894969 9 81.35735719999322 5.599412478210679 9.616045571469744 3.4271847503263584 10-11 38.60451245093068 24.57927922235049 21.925181905191984 14.891026421526849 12-13 29.285772632766516 26.42842390960919 27.177583546923913 17.108219910700388 14-15 16.13742954593443 32.19629423559747 34.702817546125544 16.96345867234255 16-17 21.298820795065556 27.1981976705655 31.507397195246188 19.995584339122754 18-19 23.49570840917533 29.166711619584262 29.033663827183513 18.30391614405689 20-21 24.362888720722164 30.09022435872736 28.380061248992412 17.16682567155806 22-23 20.17224930528477 26.94212016454309 30.95370568734038 21.93192484283176 24-25 19.318131027222975 29.56431375389742 32.93139003154924 18.186165187330367 26-27 17.22897629106064 34.22927066845246 28.98769625801639 19.554056782470518 28-29 16.500469308459728 29.978869559990567 34.4294395886731 19.091221542876607 30-31 22.264717713658648 29.773229227513653 29.61710132284877 18.344951735978928 32-33 24.43521154329274 28.816926545905147 28.350700571955233 18.397161338846875 34-35 18.55583229427875 28.295485545453563 30.87132625491849 22.277355905349193 36-37 21.723394679937797 29.20031071456644 29.819697700619734 19.25659690487603 38-39 18.559454215068115 31.357280137848765 28.67066259573045 21.412603051352672 40-41 19.87660038808496 26.92401056059628 29.33120076692246 23.868188284396304 42-43 20.387445343674045 26.978840276375678 28.76279038942584 23.87092399052444 44-45 19.81992118083865 30.627231912358766 28.02330205124016 21.52954485556242 46-47 20.49741302381066 29.99197012454784 28.320338087040152 21.19027876460135 48-49 20.85968216489141 27.861201830380054 30.573981970540682 20.70513403418785 50-51 18.4022859714531 30.29104830717587 29.450685621899215 21.855980099471818 52-53 21.24957808475911 26.447805038939503 30.41477158009762 21.887845296203764 54-55 20.68286307444049 27.275259815020032 30.501967396547926 21.539909713991555 56-57 21.026714362996607 26.38338108617551 30.3655674008634 22.224337149964473 58-59 21.68328383374921 28.491994013812622 29.40911059496599 20.415611557472175 60-61 22.602365499586178 30.429798698266257 27.250638459866806 19.717197342280762 62-63 22.232736923710018 27.55091110573389 29.955250012715258 20.26110195784084 64-65 19.856833948032374 31.50481561340696 29.31644336625942 19.321907072301244 66-67 17.27898962281163 31.499999229378556 27.11828422676615 24.10272692104367 68-69 17.113151887945477 33.90075474664279 26.14206098081615 22.844032384595586 70-71 18.314011284980435 31.279062061227414 28.447644749679036 21.959281904113116 72-73 21.14311673219518 31.25995064940269 27.56747946679161 20.02945315161052 74-75 19.50966898726471 33.46284911077991 24.886988365157432 22.140493536797944 76-77 22.89119441700176 30.3888786995609 26.618459157834064 20.101467725603282 78-79 17.651392435888148 31.508899907063054 28.80058937128079 22.03911828576801 80-81 15.943155879764559 30.313666046573278 29.907047641358947 23.836130432303218 82-83 18.26053015672899 29.18416619530322 30.693736543023025 21.861567104944772 84-85 16.087840055977942 28.524128928050157 29.64630787559704 25.741723140374862 86 17.203199003740597 28.93668111838749 30.147096221334806 23.713023656537104 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 822.0 1 1306.5 2 5317.0 3 5362.5 4 2206.0 5 3241.5 6 4789.0 7 5625.0 8 5977.0 9 6016.0 10 5349.5 11 4713.0 12 4237.0 13 3931.5 14 3819.0 15 3820.5 16 3927.5 17 3930.0 18 4158.5 19 4214.0 20 4079.5 21 4221.0 22 4414.5 23 4929.0 24 5578.5 25 6521.5 26 6892.5 27 7585.0 28 10220.5 29 11920.0 30 14312.0 31 17019.5 32 19054.5 33 21999.5 34 25691.5 35 28477.5 36 28797.0 37 31437.0 38 38176.0 39 43227.5 40 48088.0 41 58432.5 42 67424.0 43 69979.0 44 70986.0 45 74337.0 46 77086.5 47 77838.5 48 75104.5 49 70098.5 50 68173.0 51 58123.0 52 43663.0 53 37457.0 54 34321.0 55 31087.5 56 28110.5 57 27027.0 58 23983.5 59 18063.0 60 13027.5 61 9380.0 62 6162.0 63 3573.5 64 2714.0 65 2354.5 66 1662.5 67 1203.0 68 1040.5 69 883.0 70 596.0 71 431.0 72 348.5 73 217.0 74 173.5 75 145.5 76 70.0 77 26.0 78 15.5 79 7.0 80 12.5 81 14.0 82 6.0 83 2.0 84 2.0 85 3.0 86 4.0 87 3.5 88 1.5 89 0.5 90 1.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1297654.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.78123779564754 #Duplication Level Percentage of deduplicated Percentage of total 1 76.53242506546655 15.90438524363037 2 10.204438896932476 4.241217425766181 3 3.6110136086679803 2.2512399745514595 4 1.7853844443002223 1.4840999477461183 5 1.0201832899845438 1.060033577215743 6 0.7516109818046057 0.9371643925620976 7 0.5385526777993791 0.7834253883982154 8 0.4626817437312184 0.7692079472146643 9 0.35402563412733684 0.6621381799699589 >10 2.9151173657010316 12.613430608506546 >50 0.7246081473721167 10.95945007916406 >100 1.0850485115254538 44.21115810176692 >500 0.00820029792289934 1.142847127748036 >1k 0.006336593849513127 1.9723679282803472 >5k 0.0 0.0 >10k+ 3.7274081467724275E-4 1.007834077479307 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13011 1.0026555614979031 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAG 2799 0.2156969423282323 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2361 0.18194372305714773 No Hit CTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC 2203 0.16976790423333185 Illumina PCR Primer Index 10 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTG 2107 0.16236993836569688 Illumina PCR Primer Index 10 (95% over 22bp) GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 1562 0.12037106963797746 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1428 0.11004474228107029 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGC 1399 0.10780994009188889 No Hit GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAA 1299 0.1001037256464358 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18101897732369338 0.0 2 0.0 0.0 0.0 0.6005452917341603 0.0 3 0.0 0.0 0.0 0.8473753404220231 0.0 4 0.0 0.0 0.0 1.1950797362008672 0.0 5 0.0 0.0 0.0 1.9804971124814472 0.0 6 0.0 0.0 0.0 2.618263419987146 0.0 7 0.0 0.0 0.0 3.033474254308159 0.0 8 0.0 0.0 0.0 3.8171192012662853 0.0 9 0.0 0.0 0.0 4.06942066221042 0.0 10 0.0 0.0 0.0 4.570632849742689 0.0 11 0.0 0.0 0.0 5.409146043552441 0.0 12 0.0 0.0 0.0 5.971083200914882 0.0 13 0.0 0.0 0.0 6.188090199698841 0.0 14 0.0 0.0 0.0 6.275555733654734 0.0 15 0.0 0.0 0.0 6.430065333286069 0.0 16 0.0 0.0 0.0 6.7645150402187335 0.0 17 0.0 0.0 0.0 7.141965423757026 0.0 18 7.706214445453102E-5 0.0 0.0 7.604492414773121 0.0 19 7.706214445453102E-5 0.0 0.0 7.887002236343432 0.0 20 7.706214445453102E-5 0.0 0.0 8.191860079805556 0.0 21 7.706214445453102E-5 0.0 0.0 8.573548881288849 0.0 22 7.706214445453102E-5 0.0 0.0 8.948841524782415 0.0 23 7.706214445453102E-5 0.0 0.0 9.308875863673984 0.0 24 7.706214445453102E-5 0.0 0.0 9.581752917187478 0.0 25 7.706214445453102E-5 0.0 0.0 9.852626354945155 0.0 26 7.706214445453102E-5 0.0 0.0 10.080807364675021 0.0 27 7.706214445453102E-5 0.0 0.0 10.346980011620971 0.0 28 7.706214445453102E-5 0.0 0.0 10.608991302766377 0.0 29 7.706214445453102E-5 0.0 0.0 10.921015925662774 0.0 30 7.706214445453102E-5 0.0 0.0 11.287523484688522 0.0 31 7.706214445453102E-5 0.0 0.0 11.58698697803883 0.0 32 1.5412428890906204E-4 0.0 0.0 11.850308325639963 0.0 33 1.5412428890906204E-4 0.0 0.0 12.116326848297003 0.0 34 1.5412428890906204E-4 0.0 0.0 12.407313505757314 0.0 35 1.5412428890906204E-4 0.0 0.0 12.722882987298618 0.0 36 1.5412428890906204E-4 0.0 0.0 13.00169382593511 0.0 37 1.5412428890906204E-4 0.0 0.0 13.281275286016148 0.0 38 1.5412428890906204E-4 0.0 0.0 13.622506461660812 0.0 39 1.5412428890906204E-4 0.0 0.0 14.111696954658175 0.0 40 1.5412428890906204E-4 0.0 0.0 14.428884741233025 0.0 41 1.5412428890906204E-4 0.0 0.0 14.761407894554326 0.0 42 1.5412428890906204E-4 0.0 0.0 15.098477714398445 0.0 43 1.5412428890906204E-4 0.0 0.0 15.464677024846377 0.0 44 1.5412428890906204E-4 0.0 0.0 15.76999724117523 0.0 45 1.5412428890906204E-4 0.0 0.0 16.082484236938352 0.0 46 2.3118643336359306E-4 0.0 0.0 16.393198803379022 0.0 47 2.3118643336359306E-4 0.0 0.0 16.727956758889505 0.0 48 2.3118643336359306E-4 0.0 0.0 17.04830409338699 0.0 49 2.3118643336359306E-4 0.0 0.0 17.386683969686835 0.0 50 2.3118643336359306E-4 0.0 0.0 17.717665880119046 0.0 51 3.082485778181241E-4 0.0 0.0 18.065832648764616 0.0 52 3.082485778181241E-4 0.0 0.0 18.48666901963081 0.0 53 3.082485778181241E-4 0.0 0.0 18.83707059046556 0.0 54 3.082485778181241E-4 0.0 0.0 19.17136617310932 0.0 55 3.082485778181241E-4 0.0 0.0 19.51390740520971 0.0 56 3.082485778181241E-4 0.0 0.0 19.838647281941103 0.0 57 3.082485778181241E-4 0.0 0.0 20.17517766677404 0.0 58 3.082485778181241E-4 0.0 0.0 20.493136074793433 0.0 59 3.082485778181241E-4 0.0 0.0 20.833750753282462 0.0 60 3.082485778181241E-4 0.0 0.0 21.29242463707583 0.0 61 3.082485778181241E-4 0.0 0.0 21.67642530289276 0.0 62 3.082485778181241E-4 0.0 0.0 22.114446531972312 0.0 63 3.082485778181241E-4 0.0 0.0 22.526189569792873 0.0 64 3.8531072227265513E-4 0.0 0.0 22.929995206734613 0.0 65 3.8531072227265513E-4 0.0 0.0 23.299045816527364 0.0 66 3.8531072227265513E-4 0.0 0.0 23.652144562418027 0.0 67 3.8531072227265513E-4 0.0 0.0 24.03876534114641 0.0 68 3.8531072227265513E-4 0.0 0.0 24.4723169658476 0.0 69 3.8531072227265513E-4 0.0 0.0 25.118328922809933 0.0 70 3.8531072227265513E-4 0.0 0.0 25.513118288850496 0.0 71 3.8531072227265513E-4 0.0 0.0 25.91152957568042 0.0 72 3.8531072227265513E-4 0.0 0.0 26.32974583363516 0.0 73 4.623728667271861E-4 0.0 0.0 26.697332262683272 0.0 74 4.623728667271861E-4 0.0 0.0 27.13774241824092 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGCG 15 0.0013098293 80.0 1 TAATACG 60 0.0 80.0 1 TTGCGCA 50 0.0 80.0 1 CGAACGG 40 4.1836756E-11 79.99999 2 TACTACG 40 4.1836756E-11 79.99999 1 GGTACGT 145 0.0 77.24138 8 GCGTAAG 190 0.0 75.78948 1 TACGGGA 280 0.0 75.71429 4 GCGCGAC 90 0.0 75.55555 9 CGTAAGG 265 0.0 72.452835 2 CGTTTTT 4605 0.0 71.92182 1 ACGGGAT 260 0.0 70.76923 5 GTAGGGT 1490 0.0 70.067116 4 TATTACG 40 3.7143764E-9 69.99999 1 TAGGGAC 1315 0.0 69.961975 5 TACGGGT 75 0.0 69.333336 4 AGGGTAA 1510 0.0 68.874176 6 TAGGGTA 1710 0.0 68.77193 5 CTAGTCG 35 1.1815973E-7 68.57143 1 GCGATAT 35 1.1815973E-7 68.57143 9 >>END_MODULE