##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547804_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2669130 Sequences flagged as poor quality 0 Sequence length 86 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.841594077470937 31.0 31.0 33.0 30.0 34.0 2 32.28455376845639 33.0 31.0 34.0 31.0 34.0 3 32.202460726903524 33.0 31.0 34.0 30.0 34.0 4 35.95011932727143 37.0 35.0 37.0 35.0 37.0 5 35.95779785922754 37.0 35.0 37.0 35.0 37.0 6 36.021478159550114 37.0 35.0 37.0 35.0 37.0 7 36.27050162412471 37.0 35.0 37.0 35.0 37.0 8 36.22689565513856 37.0 37.0 37.0 35.0 37.0 9 38.080699703648754 39.0 39.0 39.0 37.0 39.0 10-11 37.656865345636966 39.0 37.5 39.0 35.0 39.0 12-13 37.24999344355651 39.0 37.0 39.0 34.0 39.0 14-15 38.52282391640722 40.0 38.0 41.0 34.0 41.0 16-17 38.55951901930592 40.0 38.0 41.0 34.0 41.0 18-19 38.06180553213969 39.0 37.0 41.0 34.0 41.0 20-21 37.52682859208806 39.0 35.0 41.0 33.5 41.0 22-23 37.33976464241157 39.0 35.0 41.0 33.0 41.0 24-25 37.208775143960764 39.0 35.0 41.0 33.0 41.0 26-27 37.10696556555881 39.0 35.0 41.0 33.0 41.0 28-29 36.934693701693064 38.5 35.0 41.0 33.0 41.0 30-31 36.4862383997782 38.0 35.0 41.0 31.5 41.0 32-33 35.60265273703416 38.0 35.0 41.0 27.0 41.0 34-35 34.7762696084492 38.0 35.0 41.0 21.0 41.0 36-37 34.43363080854061 38.0 34.0 41.0 18.0 41.0 38-39 34.24235631085784 38.0 34.0 41.0 18.0 41.0 40-41 34.04735681664063 38.0 34.0 40.0 17.5 41.0 42-43 33.88913784641437 38.0 33.5 40.0 15.5 41.0 44-45 33.74224728656903 37.0 33.0 40.0 15.0 41.0 46-47 33.68048521428331 37.0 33.0 40.0 16.5 41.0 48-49 33.560097859602195 36.5 33.0 40.0 17.0 41.0 50-51 33.37382892553004 36.0 33.0 40.0 15.0 41.0 52-53 33.14374402895325 36.0 33.0 40.0 15.0 41.0 54-55 32.908239950845406 35.0 33.0 40.0 13.5 41.0 56-57 32.60663474615324 35.0 32.5 39.5 11.0 41.0 58-59 32.28581653947166 35.0 32.0 39.0 10.0 41.0 60-61 31.94295912900458 35.0 31.0 39.0 10.0 41.0 62-63 31.61269739578065 35.0 31.0 38.5 10.0 40.0 64-65 31.30512826276727 35.0 31.0 38.0 10.0 40.0 66-67 30.953219026424343 35.0 30.0 37.0 9.0 40.0 68-69 30.45467980203287 35.0 29.0 36.5 8.0 39.5 70-71 30.15036247766126 35.0 29.0 36.0 8.0 39.0 72-73 29.895480737169038 35.0 29.0 36.0 7.5 38.5 74-75 29.614136254135243 35.0 29.0 35.0 7.0 37.5 76-77 27.711559759172466 32.0 24.5 34.5 7.0 35.5 78-79 28.867895344175817 34.0 27.0 35.0 7.0 36.0 80-81 28.964249399617103 34.0 27.0 35.0 7.0 36.0 82-83 28.792580541225043 34.0 27.0 35.0 7.0 36.0 84-85 28.56423197821013 34.0 26.0 35.0 7.0 35.5 86 28.17819401827562 34.0 25.0 35.0 7.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 8.0 10 19.0 11 26.0 12 79.0 13 177.0 14 724.0 15 2370.0 16 6358.0 17 15517.0 18 34475.0 19 56614.0 20 68012.0 21 67225.0 22 56047.0 23 42824.0 24 35008.0 25 32094.0 26 32730.0 27 36017.0 28 41166.0 29 49543.0 30 60788.0 31 73388.0 32 83993.0 33 106765.0 34 212471.0 35 252510.0 36 238587.0 37 361063.0 38 478153.0 39 223529.0 40 846.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.945184385923504 21.35190118128379 25.184910438981987 26.51800399381072 2 41.393300438719734 21.719848789680533 25.713209922334247 11.17364084926549 3 24.435939800609187 21.57508251752444 42.80567076163394 11.183306920232436 4 22.733137763990513 23.198570320666285 42.06329403213781 12.00499788320539 5 20.79909933199207 26.69772547609146 40.33711359132002 12.16606160059645 6 19.367734055666077 34.27277802130282 37.08212039128855 9.277367531742552 7 74.66462854937751 3.2524455534200283 20.504771217587752 1.578154679614706 8 75.24399336113265 3.0037128202822645 20.179646551498053 1.5726472670870284 9 71.30742976175758 5.21064916283583 21.14014678940329 2.341774286003304 10-11 29.750798949470425 27.351271762709196 31.968412928557242 10.92951635926313 12-13 22.966135032763486 21.53594991626485 39.26841330321116 16.229501747760505 14-15 15.196056392907051 26.614833297741214 42.1765331774773 16.01257713187443 16-17 20.02669409133313 27.230052489013275 39.09288794476103 13.650365474892567 18-19 19.36119634487642 28.290959975722423 38.34906879769812 13.998774881703028 20-21 21.368779340084597 27.6633772053066 38.68043145144673 12.287412003162078 22-23 19.373691052889892 23.584332722647456 41.253329736655765 15.788646487806886 24-25 17.399283661717487 26.750888866409657 40.41588457662235 15.433942895250514 26-27 16.336540370832445 30.094000666883964 38.156777676621225 15.41268128566237 28-29 15.649181568526075 28.24939212402543 40.48347214260827 15.617954164840228 30-31 18.567004979150507 27.390741552490887 38.56685511758513 15.475398350773473 32-33 20.362496393956082 28.48978880758899 35.89349338548516 15.254221412969768 34-35 18.246001506108733 30.14264947754512 35.67576326368517 15.93558575266098 36-37 19.467672987078185 31.66520551640422 33.48930175750151 15.377819739016083 38-39 18.63189503695961 32.13442207760581 32.66292762061046 16.57075526482412 40-41 18.677040833530025 30.407136407743344 32.84444744167575 18.071375317050876 42-43 18.501646603949602 30.154245016166314 32.47944086649957 18.86466751338451 44-45 18.308156590349665 31.057104749487664 32.65187533016376 17.982863329998914 46-47 18.1656757070656 31.088369618564847 32.979697504430284 17.766257169939266 48-49 18.40878863150165 29.239677348049735 34.862539479156126 17.48899454129248 50-51 17.11570811462911 30.176742983668838 34.347727536687984 18.359821365014067 52-53 17.99421534357637 28.951212567390872 34.647975182924775 18.406596906107982 54-55 17.860314034910253 29.346547376860627 34.51864465200271 18.27449393622641 56-57 18.52628009875877 30.32473127948058 32.69112032759738 18.457868294163266 58-59 19.30610348690397 31.629894385061796 31.803546473944692 17.260455654089533 60-61 20.02197345202369 31.903897524661595 31.046951628433234 17.02717739488148 62-63 18.942052279207083 31.19456527033153 32.07449618414989 17.788886266311497 64-65 18.521802984493075 33.24967311446051 30.824819323150237 17.403704577896168 66-67 18.373065380854435 33.20793666850247 29.689449371143407 18.72954857949969 68-69 17.74012505947631 33.82253768081734 29.99962534608655 18.437711913619793 70-71 18.078456276015032 33.19920723231915 30.558253063732376 18.16408342793345 72-73 18.75169062578443 34.11858920322352 29.44513755418432 17.684582616807724 74-75 18.012217464117523 34.1053826527745 29.391412182995957 18.490987700112022 76-77 19.164147119098732 32.36164967611169 29.459955116461167 19.014248088328404 78-79 18.148853746351808 33.21276970398594 29.68993642123089 18.94844012843136 80-81 17.589139532356985 33.1972028338822 29.77024348757835 19.443414146182462 82-83 18.06613016226261 33.145893980435574 29.52366501444291 19.264310842858908 84-85 17.692562745164157 32.669240539052055 29.19902739844069 20.439169317343104 86 17.833338953142036 32.907052110612824 29.709343493947465 19.550265442297675 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2663.0 1 3282.0 2 46433.5 3 53014.0 4 17541.0 5 20371.5 6 25320.0 7 27917.0 8 29455.5 9 30897.0 10 29921.5 11 28295.5 12 27585.0 13 26870.0 14 26118.0 15 25779.5 16 24805.5 17 23823.0 18 23447.5 19 23023.5 20 22975.0 21 23322.0 22 23613.5 23 24290.5 24 26007.5 25 28187.5 26 31172.0 27 35596.0 28 39705.5 29 41527.0 30 44770.0 31 50326.5 32 51922.5 33 54577.0 34 61010.0 35 66659.5 36 69248.0 37 70925.5 38 75033.0 39 78768.5 40 82342.0 41 87332.5 42 91884.5 43 93714.0 44 94708.5 45 94602.0 46 94841.5 47 93211.0 48 88304.5 49 82858.5 50 79348.0 51 75875.5 52 70539.5 53 67839.0 54 66179.5 55 63127.0 56 56287.0 57 51677.0 58 47659.5 59 38444.5 60 30243.5 61 24456.0 62 19912.0 63 15123.0 64 12094.0 65 10455.0 66 7715.5 67 5764.5 68 4265.0 69 3192.5 70 2104.5 71 1440.0 72 1074.5 73 659.5 74 513.5 75 344.0 76 212.0 77 115.5 78 61.5 79 45.0 80 45.0 81 35.0 82 22.0 83 13.0 84 5.0 85 4.5 86 6.0 87 4.5 88 3.0 89 2.5 90 2.0 91 1.5 92 0.5 93 0.0 94 0.5 95 1.5 96 2.5 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2669130.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.284047060303777 #Duplication Level Percentage of deduplicated Percentage of total 1 75.94009707905526 18.44132891231815 2 6.678790561041624 3.243761285804949 3 3.0995409354197156 2.258081938232111 4 2.0095164303765025 1.951967662548666 5 1.4715747439174833 1.786789516702332 6 1.1147161865788997 1.6241892200258619 7 0.8681948603459475 1.4758299392308396 8 0.645943061224331 1.2548889357638668 9 0.550789724827081 1.203786323822934 >10 6.254228523905428 35.17609401950959 >50 1.2315830182195704 20.11869457126205 >100 0.12829028800887676 4.335899149162233 >500 0.003758839300026952 0.616823454292728 >1k 0.002819129475020214 1.283660649021696 >5k 0.0 0.0 >10k+ 1.566183041677897E-4 5.228204422302107 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 137464 5.1501425558140665 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGC 3532 0.13232776222964038 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3321 0.12442256465589911 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCG 2834 0.10617691907100815 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.7465391344745294E-5 0.0 0.0 0.03263235586127315 0.0 2 3.7465391344745294E-5 0.0 0.0 0.1026551722846021 0.0 3 3.7465391344745294E-5 0.0 0.0 0.15653040503834584 0.0 4 3.7465391344745294E-5 0.0 0.0 0.2110050840536055 0.0 5 3.7465391344745294E-5 0.0 0.0 0.38533154998070535 0.0 6 3.7465391344745294E-5 0.0 0.0 0.6351882448588116 0.0 7 3.7465391344745294E-5 0.0 0.0 0.8336424228119275 0.0 8 3.7465391344745294E-5 0.0 0.0 1.0926032077868069 0.0 9 3.7465391344745294E-5 0.0 0.0 1.3514515965876521 0.0 10 3.7465391344745294E-5 0.0 0.0 1.6139341283489377 0.0 11 3.7465391344745294E-5 0.0 0.0 1.9345254820859232 0.0 12 3.7465391344745294E-5 0.0 0.0 2.138224814827303 0.0 13 3.7465391344745294E-5 0.0 0.0 2.230801796840169 0.0 14 3.7465391344745294E-5 0.0 0.0 2.291495730818656 0.0 15 3.7465391344745294E-5 0.0 0.0 2.343272901657094 0.0 16 3.7465391344745294E-5 0.0 0.0 2.4114599139045305 0.0 17 3.7465391344745294E-5 0.0 0.0 2.4878143814651215 0.0 18 3.7465391344745294E-5 0.0 0.0 2.5710999464244906 0.0 19 3.7465391344745294E-5 0.0 0.0 2.6340418038836626 0.0 20 3.7465391344745294E-5 0.0 0.0 2.703240381697407 0.0 21 3.7465391344745294E-5 0.0 0.0 2.7823298228261644 0.0 22 3.7465391344745294E-5 0.0 0.0 2.878278690060057 0.0 23 3.7465391344745294E-5 0.0 0.0 2.971979633813265 0.0 24 3.7465391344745294E-5 0.0 0.0 3.0529423445092596 0.0 25 3.7465391344745294E-5 0.0 0.0 3.120117791190388 0.0 26 3.7465391344745294E-5 0.0 0.0 3.187630426393619 0.0 27 3.7465391344745294E-5 0.0 0.0 3.257503381251569 0.0 28 3.7465391344745294E-5 0.0 0.0 3.3324716293324044 0.0 29 3.7465391344745294E-5 0.0 0.0 3.4171434137715284 0.0 30 7.493078268949059E-5 0.0 0.0 3.5121931116131475 0.0 31 7.493078268949059E-5 0.0 0.0 3.5977266000532007 0.0 32 7.493078268949059E-5 0.0 0.0 3.680038064837606 0.0 33 7.493078268949059E-5 0.0 0.0 3.7619374103172194 0.0 34 7.493078268949059E-5 0.0 0.0 3.8533529651983978 0.0 35 7.493078268949059E-5 0.0 0.0 3.949151970866912 0.0 36 1.1239617403423587E-4 0.0 0.0 4.0537178781100955 0.0 37 1.1239617403423587E-4 0.0 0.0 4.161505809008928 0.0 38 1.1239617403423587E-4 0.0 0.0 4.290649012974265 0.0 39 1.1239617403423587E-4 0.0 0.0 4.438599843394664 0.0 40 1.1239617403423587E-4 0.0 0.0 4.569091801448412 0.0 41 1.1239617403423587E-4 0.0 0.0 4.701569425243432 0.0 42 1.1239617403423587E-4 0.0 0.0 4.831874056340456 0.0 43 1.1239617403423587E-4 0.0 0.0 4.951575981686917 0.0 44 1.1239617403423587E-4 0.0 0.0 5.064496671199979 0.0 45 1.1239617403423587E-4 0.0 0.0 5.177379895321697 0.0 46 1.1239617403423587E-4 0.0 0.0 5.303188679457351 0.0 47 1.1239617403423587E-4 0.0 0.0 5.43731478047154 0.0 48 1.1239617403423587E-4 0.0 0.0 5.577435344100887 0.0 49 1.1239617403423587E-4 0.0 0.0 5.712198356767936 0.0 50 1.1239617403423587E-4 0.0 0.0 5.84905943135029 0.0 51 1.1239617403423587E-4 0.0 0.0 5.980263231839588 0.0 52 1.4986156537898117E-4 0.0 0.0 6.121732549557346 0.0 53 1.4986156537898117E-4 0.0 0.0 6.2602795667502145 0.0 54 1.4986156537898117E-4 0.0 0.0 6.40069985351032 0.0 55 1.8732695672372645E-4 0.0 0.0 6.538160374354191 0.0 56 1.8732695672372645E-4 0.0 0.0 6.674721725805787 0.0 57 1.8732695672372645E-4 0.0 0.0 6.819000947874401 0.0 58 1.8732695672372645E-4 0.0 0.0 6.960470265592159 0.0 59 2.2479234806847175E-4 0.0 0.0 7.111418327320138 0.0 60 2.2479234806847175E-4 0.0 0.0 7.282372908026211 0.0 61 2.2479234806847175E-4 0.0 0.0 7.461007893957956 0.0 62 2.2479234806847175E-4 0.0 0.0 7.668079111920363 0.0 63 2.2479234806847175E-4 0.0 0.0 7.856305238036364 0.0 64 2.2479234806847175E-4 0.0 0.0 8.026922630220334 0.0 65 2.62257739413217E-4 0.0 0.0 8.183790223780782 0.0 66 2.62257739413217E-4 0.0 0.0 8.339983440297026 0.0 67 3.371885221027076E-4 0.0 0.0 8.503444942734149 0.0 68 3.746539134474529E-4 0.0 0.0 8.683503613536995 0.0 69 3.746539134474529E-4 0.0 0.0 8.90121500264131 0.0 70 4.121193047921982E-4 0.0 0.0 9.094461491197507 0.0 71 4.121193047921982E-4 0.0 0.0 9.273546061825389 0.0 72 4.121193047921982E-4 0.0 0.0 9.45135680914755 0.0 73 4.495846961369435E-4 0.0 0.0 9.627219356119785 0.0 74 4.495846961369435E-4 0.0 0.0 9.819341882935639 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 46510 0.0 77.54032 1 TACGGGA 1035 0.0 66.47343 4 ATAGGGA 3390 0.0 64.54277 4 TAGGGAC 2345 0.0 63.454163 5 TAGGGAT 3820 0.0 63.036648 5 TATCGCG 90 0.0 62.22222 1 GTAGGGA 3590 0.0 62.06128 4 TATAGCG 155 0.0 61.935486 1 CGAGGGA 1665 0.0 61.26126 4 AGTAGGG 3680 0.0 61.195652 3 GTACGGG 835 0.0 60.83832 3 ACGGGAT 1215 0.0 60.246914 5 AGGGATC 2755 0.0 59.81851 6 GTTTTTT 61175 0.0 59.514507 2 AGGGATT 4315 0.0 59.513325 6 GAGGGAT 4140 0.0 59.32367 5 GCGTAAG 130 0.0 58.46154 1 TAGGGGT 2785 0.0 58.168766 5 TATGGGA 2765 0.0 57.866188 4 ATAGCGG 520 0.0 57.69231 2 >>END_MODULE