##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547799_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2454908 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.83752792365335 31.0 31.0 33.0 30.0 34.0 2 32.293999612205425 33.0 31.0 34.0 31.0 34.0 3 32.44424597581661 34.0 31.0 34.0 31.0 34.0 4 36.03340410312729 37.0 35.0 37.0 35.0 37.0 5 35.98270892432629 37.0 35.0 37.0 35.0 37.0 6 36.0272727124601 37.0 35.0 37.0 35.0 37.0 7 36.25602385099564 37.0 35.0 37.0 35.0 37.0 8 36.20556086012184 37.0 36.0 37.0 35.0 37.0 9 38.08106291559602 39.0 39.0 39.0 37.0 39.0 10-11 37.62717482691816 39.0 37.5 39.0 35.0 39.0 12-13 36.88776687354475 39.0 35.0 39.0 33.5 39.0 14-15 37.91803256985598 40.0 36.0 41.0 33.0 41.0 16-17 38.107449444133955 40.0 35.5 41.0 34.0 41.0 18-19 38.01269986492366 40.0 36.0 41.0 34.0 41.0 20-21 37.82448079520699 40.0 35.0 41.0 34.0 41.0 22-23 37.64954796676698 39.5 35.0 41.0 33.0 41.0 24-25 37.5623108890435 39.0 35.0 41.0 33.0 41.0 26-27 37.52985549763983 39.0 35.0 41.0 33.0 41.0 28-29 37.5374696322632 40.0 35.0 41.0 33.0 41.0 30-31 37.36059416483225 39.0 35.0 41.0 33.0 41.0 32-33 37.05154938596477 39.0 35.0 41.0 32.5 41.0 34-35 36.780438004194046 39.0 35.0 41.0 31.5 41.0 36-37 36.59557975288687 39.0 35.0 41.0 31.0 41.0 38-39 36.50769927019668 39.0 35.0 41.0 31.0 41.0 40-41 36.35550313901784 39.0 35.0 41.0 30.5 41.0 42-43 36.29958230613937 39.0 35.0 41.0 30.0 41.0 44-45 36.21705925435902 38.5 35.0 41.0 30.0 41.0 46-47 36.12453908659714 38.0 35.0 41.0 30.0 41.0 48-49 36.022700036009496 38.0 35.0 40.5 30.0 41.0 50-51 35.861663655012734 38.0 35.0 40.0 30.0 41.0 52-53 35.675297607894066 38.0 35.0 40.0 29.0 41.0 54-55 35.47933303406889 37.0 35.0 40.0 29.0 41.0 56-57 35.18819585092395 37.0 34.5 40.0 28.5 41.0 58-59 34.89380437067295 36.0 34.0 40.0 27.5 41.0 60-61 34.57502399275248 36.0 34.0 39.0 26.5 41.0 62-63 34.20673259445975 35.0 33.5 39.0 26.0 41.0 64-65 33.874707932028414 35.0 33.0 39.0 26.0 40.0 66-67 33.60109156840093 35.0 33.0 38.0 25.5 40.0 68-69 33.19422601580182 35.0 33.0 37.0 24.5 40.0 70-71 32.9464672403202 35.0 33.0 37.0 24.0 39.0 72-73 32.67813478142561 35.0 33.0 36.0 24.0 39.0 74-75 32.39006349728788 35.0 33.0 36.0 23.5 38.5 76-77 30.33832815730773 33.0 29.5 34.5 19.5 36.0 78-79 31.460339450602632 34.0 31.5 35.0 20.0 37.0 80-81 31.685939758231264 35.0 32.0 35.0 20.0 37.0 82-83 31.527792487539248 35.0 32.0 35.0 20.0 36.0 84-85 31.327638754690604 35.0 32.0 35.0 19.5 36.0 86 30.91348677832326 34.0 31.0 35.0 19.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 22.0 10 23.0 11 27.0 12 43.0 13 120.0 14 388.0 15 1078.0 16 2479.0 17 5675.0 18 11448.0 19 16832.0 20 19227.0 21 19314.0 22 16664.0 23 14986.0 24 15753.0 25 18126.0 26 21724.0 27 26638.0 28 33141.0 29 41904.0 30 52309.0 31 65807.0 32 83088.0 33 112048.0 34 268541.0 35 245246.0 36 218122.0 37 372709.0 38 516339.0 39 253995.0 40 1081.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.695159248330285 23.746307397262953 30.54863970462437 14.009893649782395 2 31.687541854928984 25.297200546822936 29.844988081019736 13.170269517228345 3 28.750527514676723 25.576355610882363 32.426347545407 13.246769329033919 4 27.3064815463553 26.98769159577467 31.980628194620735 13.725198663249294 5 25.397448702761977 31.275673059845825 28.901571871532454 14.425306365859738 6 22.518685017931425 39.68148704554305 26.545638370154805 11.254189566370714 7 87.15401962110188 3.9472762319402603 7.112201353370473 1.786502793587377 8 87.41484405932931 3.8202246275624177 6.689089774443686 2.0758415386645854 9 82.61621209430251 6.269033299822234 8.35391794723061 2.760836658644642 10-11 38.55480531245977 28.97752176456307 20.70201816116938 11.765654761807774 12-13 29.447152398379085 25.350624137442217 28.46982453110259 16.732398933076105 14-15 16.343280481386675 31.390137634485693 35.68687706423214 16.57970481989549 16-17 21.422778368883886 25.679903279471166 33.193463869114446 19.703854482530506 18-19 23.448536564303023 27.51382129187733 30.721904853460902 18.31573729035874 20-21 25.419913903087206 27.40096573883828 30.399367308265727 16.77975304980879 22-23 20.9935973160705 24.373540678510153 32.84031417877982 21.792547826639534 24-25 19.623158994145605 27.8271324220704 33.75083709857966 18.798871485204334 26-27 17.855903357681836 32.79206389811757 30.507171755519963 18.844860988680633 28-29 16.303706696951576 28.963386815310386 35.642211439288154 19.09069504844988 30-31 22.473388004764335 28.339819659229594 31.043138887485807 18.14365344852027 32-33 25.255752965080564 27.861003345135543 28.22851202570524 18.654731664078653 34-35 19.822473999025625 28.362794043605703 31.18701393290502 20.627718024463647 36-37 22.801669146053538 28.346601990787434 30.546317825352315 18.305411037806714 38-39 19.609798004650276 30.20155948817634 29.18915902347461 20.99948348369878 40-41 21.08857032524233 26.82224751395979 29.764374062082975 22.3248080987149 42-43 20.438423761705124 26.256279257715565 30.16414464411701 23.141152336462305 44-45 19.472379412996332 30.70658859721016 29.19060510617913 20.630426883614376 46-47 20.612014788334225 29.909552618672468 29.00410117201948 20.474331420973822 48-49 21.224766875174144 27.309170038144 31.313311944887545 20.152751141794315 50-51 19.24935679870692 30.684347437867327 29.899755917533366 20.16653984589239 52-53 22.30437963459323 26.568286876738355 30.296267721641705 20.831065767026708 54-55 21.500398385601414 27.123684472086122 30.83838579694229 20.537531345370173 56-57 21.77118246386423 25.98119766606325 30.141536872257536 22.106082997814987 58-59 22.831385127263427 28.006691085775927 28.83395222957439 20.327971557386267 60-61 23.61218831825877 29.140012578882796 27.961475542056974 19.286323560801463 62-63 22.94507574214594 26.03792076933229 30.679662944599144 20.337340543922625 64-65 20.196724276429094 29.726653707593115 30.794168253963083 19.282453762014708 66-67 19.330357797522353 29.17441305336086 27.5662061470328 23.929023002083987 68-69 18.241498255739117 30.907981073017808 27.718228137266244 23.132292533976834 70-71 19.60330081616093 29.275374066971143 29.730645710552082 21.390679406315837 72-73 21.963307789945695 29.921304586566993 28.53565184520153 19.579735778285784 74-75 21.270552705030088 30.941546485652417 26.290679732193627 21.497221077123868 76-77 24.338101468568272 28.44668720783019 27.646148043022382 19.56906328057915 78-79 19.416430269484643 29.34659873200951 30.428390799166404 20.808580199339445 80-81 17.68190498381202 28.358761305922663 31.398019803593453 22.56131390667186 82-83 19.354818999327062 27.233118308303204 31.820438892211033 21.5916238001587 84-85 17.636404297024573 27.639406446188612 30.15799370078227 24.56619555600454 86 18.778341184272488 26.72149017396986 32.12010388984027 22.380064751917384 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1586.0 1 2139.5 2 5636.5 3 5666.0 4 3194.5 5 4167.0 6 4987.0 7 5277.0 8 5363.0 9 5507.0 10 5636.0 11 5569.0 12 5521.5 13 5712.5 14 5813.0 15 5767.5 16 5677.5 17 5820.0 18 6232.5 19 7224.0 20 7901.0 21 7812.0 22 8246.0 23 9821.5 24 12284.5 25 15460.0 26 19530.5 27 24870.5 28 30308.5 29 32623.0 30 38098.5 31 45389.0 32 49841.0 33 53425.0 34 56700.5 35 63747.0 36 68465.0 37 70351.0 38 74006.0 39 77828.5 40 89547.5 41 104926.5 42 115792.0 43 120944.0 44 127711.5 45 135288.0 46 134445.5 47 136359.0 48 135639.0 49 121374.5 50 111395.0 51 98228.0 52 79507.0 53 70038.0 54 63432.0 55 57770.0 56 52148.5 57 49498.0 58 44372.0 59 36175.0 60 28872.5 61 21051.5 62 15168.5 63 11269.0 64 9663.0 65 8268.5 66 6053.0 67 4123.5 68 2863.5 69 2335.5 70 1638.5 71 1318.0 72 999.5 73 459.5 74 175.5 75 155.0 76 128.0 77 46.0 78 29.5 79 26.0 80 21.5 81 13.5 82 14.5 83 14.5 84 9.5 85 8.0 86 7.0 87 4.5 88 2.5 89 2.0 90 1.0 91 1.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2454908.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.828279224591512 #Duplication Level Percentage of deduplicated Percentage of total 1 79.77180664289072 12.626504297937984 2 8.593819361852542 2.7205074493020573 3 2.6495782317009704 1.2581479223628715 4 1.3165375601413196 0.83354096446317 5 0.7807439917807464 0.6178916952413918 6 0.5274105829171675 0.5008801183450501 7 0.42869470726033504 0.47498496700347714 8 0.31767233388056837 0.4022565122071439 9 0.2618063599073433 0.37295497506485975 >10 2.526944495421598 9.023370186765032 >50 0.9657577029222412 11.217892461770704 >100 1.8444619714087118 57.33593225842337 >500 0.010621199553472986 1.0715095949412419 >1k 0.0038858047146852386 0.9974568500895703 >5k 0.0 0.0 >10k+ 2.590536476456826E-4 0.5461697460820963 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13320 0.5425865246273994 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAG 2695 0.10978008137168481 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.073472407112609E-5 0.0 0.0 0.03474671963267055 0.0 2 4.073472407112609E-5 0.0 0.0 0.1446082704524976 0.0 3 4.073472407112609E-5 0.0 0.0 0.2130018721679183 0.0 4 4.073472407112609E-5 0.0 0.0 0.3235966480210256 0.0 5 4.073472407112609E-5 0.0 0.0 0.5625058046981801 0.0 6 4.073472407112609E-5 0.0 0.0 0.7462194102589588 0.0 7 4.073472407112609E-5 0.0 0.0 0.8568956555602084 0.0 8 4.073472407112609E-5 0.0 0.0 1.0610580926046924 0.0 9 4.073472407112609E-5 0.0 0.0 1.1366210057566313 0.0 10 4.073472407112609E-5 0.0 0.0 1.3084808066127123 0.0 11 4.073472407112609E-5 0.0 0.0 1.591790812527394 0.0 12 4.073472407112609E-5 0.0 0.0 1.81917204229242 0.0 13 4.073472407112609E-5 0.0 0.0 1.898686223679258 0.0 14 4.073472407112609E-5 0.0 0.0 1.9380359671319658 0.0 15 4.073472407112609E-5 0.0 0.0 1.9946979683149022 0.0 16 4.073472407112609E-5 0.0 0.0 2.114091444567373 0.0 17 4.073472407112609E-5 0.0 0.0 2.259229266432795 0.0 18 4.073472407112609E-5 0.0 0.0 2.4179317514139025 0.0 19 4.073472407112609E-5 0.0 0.0 2.536673472081235 0.0 20 4.073472407112609E-5 0.0 0.0 2.6636028722868637 0.0 21 4.073472407112609E-5 0.0 0.0 2.8126104929390428 0.0 22 4.073472407112609E-5 0.0 0.0 2.9746124905699114 0.0 23 4.073472407112609E-5 0.0 0.0 3.1264715419070694 0.0 24 4.073472407112609E-5 0.0 0.0 3.2453762014706866 0.0 25 4.073472407112609E-5 0.0 0.0 3.3505125242982627 0.0 26 4.073472407112609E-5 0.0 0.0 3.456830154123902 0.0 27 4.073472407112609E-5 0.0 0.0 3.585388943292376 0.0 28 4.073472407112609E-5 0.0 0.0 3.704619480648562 0.0 29 4.073472407112609E-5 0.0 0.0 3.8549306124710174 0.0 30 4.073472407112609E-5 0.0 0.0 4.012777668246631 0.0 31 8.146944814225218E-5 0.0 0.0 4.160603981900747 0.0 32 8.146944814225218E-5 0.0 0.0 4.287777790450803 0.0 33 8.146944814225218E-5 0.0 0.0 4.422935604918799 0.0 34 8.146944814225218E-5 0.0 0.0 4.5709248574692 0.0 35 8.146944814225218E-5 0.0 0.0 4.737815021988604 0.0 36 8.146944814225218E-5 0.0 0.0 4.882219618820746 0.0 37 8.146944814225218E-5 0.0 0.0 5.038885367598297 0.0 38 1.2220417221337827E-4 0.0 0.0 5.208871371147106 0.0 39 1.2220417221337827E-4 0.0 0.0 5.523180502079915 0.0 40 1.2220417221337827E-4 0.0 0.0 5.7000099392726735 0.0 41 1.2220417221337827E-4 0.0 0.0 5.862460018868324 0.0 42 1.2220417221337827E-4 0.0 0.0 6.039452394957367 0.0 43 1.2220417221337827E-4 0.0 0.0 6.210578970780167 0.0 44 1.2220417221337827E-4 0.0 0.0 6.374862112959019 0.0 45 1.6293889628450436E-4 0.0 0.0 6.541548603858067 0.0 46 1.6293889628450436E-4 0.0 0.0 6.722003431493156 0.0 47 1.6293889628450436E-4 0.0 0.0 6.911419898423892 0.0 48 1.6293889628450436E-4 0.0 0.0 7.095296442880955 0.0 49 1.6293889628450436E-4 0.0 0.0 7.289478872528013 0.0 50 1.6293889628450436E-4 0.0 0.0 7.479669299216101 0.0 51 1.6293889628450436E-4 0.0 0.0 7.688190351736195 0.0 52 1.6293889628450436E-4 0.0 0.0 7.935816739364571 0.0 53 1.6293889628450436E-4 0.0 0.0 8.13729068462036 0.0 54 1.6293889628450436E-4 0.0 0.0 8.35212561937148 0.0 55 1.6293889628450436E-4 0.0 0.0 8.558121118999164 0.0 56 1.6293889628450436E-4 0.0 0.0 8.77136739951151 0.0 57 1.6293889628450436E-4 0.0 0.0 8.98082535068524 0.0 58 1.6293889628450436E-4 0.0 0.0 9.18735040172585 0.0 59 1.6293889628450436E-4 0.0 0.0 9.409802729878269 0.0 60 1.6293889628450436E-4 0.0 0.0 9.668916309694701 0.0 61 1.6293889628450436E-4 0.0 0.0 9.929170461785127 0.0 62 1.6293889628450436E-4 0.0 0.0 10.238876568897897 0.0 63 2.0367362035563044E-4 0.0 0.0 10.518316776025822 0.0 64 2.0367362035563044E-4 0.0 0.0 10.788550935513673 0.0 65 2.0367362035563044E-4 0.0 0.0 11.049090230672595 0.0 66 2.0367362035563044E-4 0.0 0.0 11.278915543881888 0.0 67 2.0367362035563044E-4 0.0 0.0 11.527519564887971 0.0 68 2.0367362035563044E-4 0.0 0.0 11.817387861378105 0.0 69 2.4440834442675653E-4 0.0 0.0 12.27740510031333 0.0 70 2.4440834442675653E-4 0.0 0.0 12.550001873797306 0.0 71 2.4440834442675653E-4 0.0 0.0 12.811152189817296 0.0 72 2.4440834442675653E-4 0.0 0.0 13.070387973805943 0.0 73 2.4440834442675653E-4 0.0 0.0 13.342495930601066 0.0 74 2.4440834442675653E-4 0.0 0.0 13.643688480382972 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGGGTA 115 0.0 73.04348 5 CGGGATA 750 0.0 68.26667 6 ACTACGG 220 0.0 67.27273 2 CGTTTTT 6870 0.0 66.492 1 ACGGGAT 1545 0.0 66.27832 5 TTAGGCG 145 0.0 66.206894 1 CGAGGGA 1555 0.0 65.59486 4 TTGCGGG 2075 0.0 64.77109 3 TACGGGA 1250 0.0 64.64 4 GTACGGG 1110 0.0 63.423428 3 AGGGATG 4120 0.0 63.30097 6 TAAGGGA 3840 0.0 62.916664 4 GAGTACG 45 9.429641E-9 62.222225 1 TGTAGGG 3990 0.0 62.05514 3 AAGGGAT 4565 0.0 61.94962 5 GAGGGAT 4995 0.0 61.9019 5 TAATGCG 240 0.0 61.666664 1 AGGGATT 5245 0.0 61.620594 6 CTAGACG 65 0.0 61.53846 1 AGGGATC 3840 0.0 60.624996 6 >>END_MODULE