##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547798_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2498952 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80987469947402 31.0 31.0 33.0 30.0 34.0 2 32.262912612967355 33.0 31.0 34.0 31.0 34.0 3 32.42566924054564 34.0 31.0 34.0 31.0 34.0 4 36.01726643809085 37.0 35.0 37.0 35.0 37.0 5 35.96598894256472 37.0 35.0 37.0 35.0 37.0 6 36.01447726887111 37.0 35.0 37.0 35.0 37.0 7 36.243070695235446 37.0 35.0 37.0 35.0 37.0 8 36.20481745947902 37.0 36.0 37.0 35.0 37.0 9 38.082887546459474 39.0 39.0 39.0 37.0 39.0 10-11 37.571772086858815 39.0 37.5 39.0 35.0 39.0 12-13 36.830480937609046 39.0 35.0 39.0 33.0 39.0 14-15 37.91968213074921 40.0 35.0 41.0 33.0 41.0 16-17 38.083079226811876 40.0 35.0 41.0 34.0 41.0 18-19 37.992311176845334 40.0 36.0 41.0 34.0 41.0 20-21 37.82195736452721 40.0 35.0 41.0 33.5 41.0 22-23 37.629058501323755 39.5 35.0 41.0 33.0 41.0 24-25 37.56563791541414 39.0 35.0 41.0 33.0 41.0 26-27 37.561736079764636 39.5 35.0 41.0 33.0 41.0 28-29 37.56139933860274 40.0 35.0 41.0 33.0 41.0 30-31 37.41088704384878 40.0 35.0 41.0 33.0 41.0 32-33 37.15364900966485 39.5 35.0 41.0 32.5 41.0 34-35 36.925541987201036 39.0 35.0 41.0 32.0 41.0 36-37 36.75721742554479 39.0 35.0 41.0 31.0 41.0 38-39 36.67859166562623 39.0 35.0 41.0 31.0 41.0 40-41 36.54871041940781 39.0 35.0 41.0 31.0 41.0 42-43 36.50159566890441 39.0 35.0 41.0 31.0 41.0 44-45 36.386908191914046 39.0 35.0 41.0 31.0 41.0 46-47 36.29932007497543 38.0 35.0 41.0 31.0 41.0 48-49 36.187956191235365 38.0 35.0 40.5 30.5 41.0 50-51 36.03123929551268 38.0 35.0 40.0 30.0 41.0 52-53 35.85522030835327 38.0 35.0 40.0 30.0 41.0 54-55 35.66593636052233 37.0 35.0 40.0 29.5 41.0 56-57 35.3646202488083 37.0 34.5 40.0 29.0 41.0 58-59 35.07514089906489 36.0 34.0 40.0 28.0 41.0 60-61 34.788577571718065 36.0 34.0 39.5 27.5 41.0 62-63 34.410259380732406 35.5 33.5 39.0 27.0 41.0 64-65 34.152545347009465 35.0 34.0 39.0 26.0 40.0 66-67 33.88965434310063 35.0 34.0 38.0 26.0 40.0 68-69 33.507224628564295 35.0 33.5 37.5 25.5 40.0 70-71 33.28411290012774 35.0 33.0 37.0 26.0 39.5 72-73 33.041502197721286 35.0 33.0 36.5 25.5 39.0 74-75 32.73992837797605 35.0 33.0 36.0 25.0 39.0 76-77 30.66835497440527 33.0 30.0 34.5 21.0 36.0 78-79 31.78815559482535 34.5 31.5 35.0 23.0 37.0 80-81 32.03964661986305 35.0 32.5 35.0 24.0 37.0 82-83 31.89229945193025 35.0 32.5 35.0 24.0 36.0 84-85 31.700753755974503 35.0 32.0 35.0 23.5 36.0 86 31.28240718509199 34.0 31.0 35.0 20.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 5.0 9 16.0 10 24.0 11 44.0 12 62.0 13 143.0 14 314.0 15 872.0 16 2063.0 17 4527.0 18 8855.0 19 13786.0 20 16485.0 21 17509.0 22 16247.0 23 15185.0 24 15821.0 25 17950.0 26 21592.0 27 26631.0 28 32942.0 29 41072.0 30 51814.0 31 64877.0 32 81775.0 33 111967.0 34 270344.0 35 255095.0 36 218873.0 37 381561.0 38 532309.0 39 277035.0 40 1155.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.07288495337245 24.39578671379042 30.524395826730565 13.006932506106562 2 30.364128642727028 25.325016246810662 31.366548857280975 12.944306253181335 3 28.84525192960889 25.685607406624854 31.363347515278406 14.105793148487846 4 27.15634393937939 27.117567684373288 30.82728279694848 14.898805579298843 5 24.825406810534975 31.668795559098374 29.64258617212335 13.863211458243295 6 23.659558086749964 39.79612253456649 25.823985414685836 10.720333963997708 7 89.00399047280621 3.678662095150287 5.6512490035823015 1.6660984284612108 8 89.78443763625712 3.034552084233711 5.447683668994043 1.733326610515128 9 85.13604903175411 6.15986221424021 6.359225787450098 2.34486296655558 10-11 38.95651056923062 29.776362251055644 19.718546014489274 11.548581165224462 12-13 29.737646021212093 25.911582135231086 27.85701766180383 16.49375418175299 14-15 16.39683355262526 32.03420874030394 34.7051083814335 16.863849325637307 16-17 21.983635540018376 26.35426770902362 32.33885644862327 19.32324030233474 18-19 23.756298640390053 28.436760690081282 29.977026369454073 17.82991430007459 20-21 26.847754578719403 28.582321709260523 28.434599784229547 16.13532392779053 22-23 21.568381465510342 25.42395772307751 31.229751511833758 21.777909299578383 24-25 19.38008413126783 28.03623278878506 33.88386411583736 18.699818964109756 26-27 17.803323153065765 34.80937208877962 29.135253498266472 18.252051259888145 28-29 16.550978170048886 29.51825405209864 35.2513773773966 18.67939040045587 30-31 21.961566288588177 29.114404758474755 30.844409976662217 18.079618976274855 32-33 24.761580054358788 28.709535037087548 28.30952735386674 18.219357554686923 34-35 19.7800517977136 28.663055552887773 30.28281455586182 21.27407809353681 36-37 22.03569736433513 29.986910512887 29.70587270183661 18.27151942094126 38-39 19.415979178471616 31.190154912939505 28.499707077206764 20.894158831382114 40-41 20.644934356482235 27.162666589834462 29.3985038528151 22.793895200868203 42-43 20.59191212956471 26.904078189577067 29.070426322714482 23.433583358143732 44-45 18.79661954291239 31.590162596160308 28.869342028178213 20.74387583274909 46-47 20.810343696077396 30.702890651761216 27.86628154522376 20.620484106937628 48-49 20.89417883976963 27.223372037558146 31.52295442249391 20.359494700178317 50-51 19.247488547198984 31.158301560013957 29.090654802493205 20.50355509029385 52-53 21.69867608501484 27.124370536128744 29.976366092666044 21.20058728619037 54-55 21.70129718377944 27.993194747238043 30.356805572896157 19.94870249608636 56-57 22.520440568686393 26.079592565203335 29.062903169008447 22.337063697101826 58-59 23.008365106652708 27.589685596201928 28.70163172401871 20.700317573126657 60-61 23.59797226997557 29.11808630177771 27.496406493602116 19.7875349346446 62-63 22.52612295074095 26.923546350630183 30.660532895389746 19.88979780323912 64-65 19.534008656428774 30.267968332324912 30.3608472671744 19.837175744071914 66-67 18.95006386677295 29.47921768805483 26.630643565782776 24.94007487938944 68-69 18.175038976338882 31.596765364040607 26.409450841792882 23.818744817827632 70-71 19.32708191273782 29.91414000749114 29.17829153981349 21.58048653995755 72-73 21.848939075260347 30.17408897809962 27.53982469451194 20.437147252128092 74-75 21.065910829819863 31.612151814040445 25.622560977561793 21.6993763785779 76-77 24.69167074837772 28.590225022329363 26.50431060700646 20.213793622286463 78-79 19.061890744600134 29.29940230944812 30.173688810349297 21.465018135602445 80-81 16.947784511267123 28.900355028828084 30.680121106767956 23.471739353136837 82-83 18.910167142065955 27.54520695075375 31.01454129571116 22.530084611469128 84-85 17.33944869689374 27.442283805371208 29.64194590372284 25.576321594012207 86 18.13532232711953 27.49944776850456 31.098276397465817 23.266953506910095 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1364.0 1 1822.5 2 4490.0 3 4532.5 4 2483.0 5 3141.0 6 3994.5 7 4307.0 8 4483.5 9 4653.0 10 4625.0 11 4497.5 12 4362.0 13 4487.0 14 4641.0 15 4662.5 16 4806.5 17 5185.0 18 5337.0 19 5843.5 20 6495.5 21 6537.0 22 6973.5 23 8636.5 24 11358.0 25 13868.5 26 17964.0 27 23776.0 28 32349.5 29 38191.0 30 41413.0 31 45587.0 32 51847.5 33 56451.0 34 61412.0 35 68512.0 36 69946.0 37 72693.0 38 78618.5 39 85328.5 40 92634.5 41 104366.0 42 119624.5 43 126926.0 44 133049.5 45 137196.0 46 137411.5 47 143469.5 48 145850.5 49 130440.5 50 116515.0 51 99207.0 52 79727.5 53 71207.5 54 63642.0 55 60532.5 56 52527.5 57 46415.0 58 41998.0 59 32645.0 60 23973.0 61 18938.0 62 16282.5 63 12708.0 64 10490.0 65 8344.5 66 5227.5 67 3395.5 68 2257.5 69 1695.0 70 1165.5 71 921.0 72 714.0 73 527.0 74 372.5 75 138.5 76 73.5 77 63.0 78 54.0 79 50.0 80 35.5 81 16.5 82 18.0 83 18.5 84 7.5 85 4.5 86 7.0 87 5.5 88 5.0 89 4.5 90 2.5 91 1.0 92 0.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2498952.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.97096608788996 #Duplication Level Percentage of deduplicated Percentage of total 1 80.4125192801224 12.0385309918451 2 8.384034013535512 2.510341777927122 3 2.5217826616977286 1.1326056812791674 4 1.1653441642587283 0.6978531185535155 5 0.6853931301668548 0.5130498654300366 6 0.5134581080118932 0.46121783535589156 7 0.3441342506790559 0.36064155376182977 8 0.2765845186477268 0.3312589959288389 9 0.21003828095996763 0.28300283832693407 >10 2.311022367118548 8.19286567882794 >50 1.0847056619874857 11.954464828498445 >100 2.0775089941663607 59.49644425683622 >500 0.009971180799397095 0.9619568517805445 >1k 0.0032338964754801383 0.6394352281118085 >5k 0.0 0.0 >10k+ 2.6949137295667825E-4 0.42633049753659413 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10567 0.4228572617641316 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.001677503209345E-5 0.0 0.0 0.0311730677500008 0.0 2 4.001677503209345E-5 0.0 0.0 0.10876559453723 0.0 3 4.001677503209345E-5 0.0 0.0 0.1615077040295292 0.0 4 4.001677503209345E-5 0.0 0.0 0.24786390454878685 0.0 5 4.001677503209345E-5 0.0 0.0 0.4358226968745298 0.0 6 4.001677503209345E-5 0.0 0.0 0.5837246973931473 0.0 7 4.001677503209345E-5 0.0 0.0 0.6793647897198506 0.0 8 4.001677503209345E-5 0.0 0.0 0.8699646891977116 0.0 9 4.001677503209345E-5 0.0 0.0 0.9293896001203704 0.0 10 4.001677503209345E-5 0.0 0.0 1.0447179457628637 0.0 11 4.001677503209345E-5 0.0 0.0 1.2451219551235877 0.0 12 4.001677503209345E-5 0.0 0.0 1.39846623704657 0.0 13 4.001677503209345E-5 0.0 0.0 1.4519286484894467 0.0 14 4.001677503209345E-5 0.0 0.0 1.4748982773578685 0.0 15 4.001677503209345E-5 0.0 0.0 1.514995085940026 0.0 16 4.001677503209345E-5 0.0 0.0 1.5963892063553042 0.0 17 4.001677503209345E-5 0.0 0.0 1.7045545492670529 0.0 18 4.001677503209345E-5 0.0 0.0 1.823284320787274 0.0 19 4.001677503209345E-5 0.0 0.0 1.9071594812545418 0.0 20 4.001677503209345E-5 0.0 0.0 1.9987178625279718 0.0 21 4.001677503209345E-5 0.0 0.0 2.1124855539442136 0.0 22 4.001677503209345E-5 0.0 0.0 2.2434204418492234 0.0 23 4.001677503209345E-5 0.0 0.0 2.376116067855645 0.0 24 4.001677503209345E-5 0.0 0.0 2.476998357711553 0.0 25 4.001677503209345E-5 0.0 0.0 2.566155732483057 0.0 26 4.001677503209345E-5 0.0 0.0 2.6537524530283094 0.0 27 4.001677503209345E-5 0.0 0.0 2.750392964730815 0.0 28 4.001677503209345E-5 0.0 0.0 2.8525557913877497 0.0 29 4.001677503209345E-5 0.0 0.0 2.9774081294878814 0.0 30 4.001677503209345E-5 0.0 0.0 3.116306355624278 0.0 31 4.001677503209345E-5 0.0 0.0 3.249642250031213 0.0 32 4.001677503209345E-5 0.0 0.0 3.3636900588726792 0.0 33 4.001677503209345E-5 0.0 0.0 3.4788983541900764 0.0 34 4.001677503209345E-5 0.0 0.0 3.604951195541171 0.0 35 4.001677503209345E-5 0.0 0.0 3.753573498010366 0.0 36 4.001677503209345E-5 0.0 0.0 3.8830277652391882 0.0 37 4.001677503209345E-5 0.0 0.0 4.026167769528986 0.0 38 4.001677503209345E-5 0.0 0.0 4.179432017901904 0.0 39 4.001677503209345E-5 0.0 0.0 4.381236614388752 0.0 40 4.001677503209345E-5 0.0 0.0 4.5445850900697575 0.0 41 4.001677503209345E-5 0.0 0.0 4.719418380184973 0.0 42 4.001677503209345E-5 0.0 0.0 4.888729355345761 0.0 43 4.001677503209345E-5 0.0 0.0 5.046235381872081 0.0 44 4.001677503209345E-5 0.0 0.0 5.210504243378824 0.0 45 4.001677503209345E-5 0.0 0.0 5.369050706055979 0.0 46 4.001677503209345E-5 0.0 0.0 5.536240792140065 0.0 47 4.001677503209345E-5 0.0 0.0 5.719797739212278 0.0 48 4.001677503209345E-5 0.0 0.0 5.904715256635582 0.0 49 4.001677503209345E-5 0.0 0.0 6.099717001366973 0.0 50 4.001677503209345E-5 0.0 0.0 6.299320675227055 0.0 51 4.001677503209345E-5 0.0 0.0 6.488720071453954 0.0 52 4.001677503209345E-5 0.0 0.0 6.709772736731238 0.0 53 4.001677503209345E-5 0.0 0.0 6.907135471189522 0.0 54 4.001677503209345E-5 0.0 0.0 7.1164632213824035 0.0 55 4.001677503209345E-5 0.0 0.0 7.320668824371176 0.0 56 4.001677503209345E-5 0.0 0.0 7.535839023718743 0.0 57 8.00335500641869E-5 0.0 0.0 7.743886237110597 0.0 58 8.00335500641869E-5 0.0 0.0 7.9527738027781245 0.0 59 8.00335500641869E-5 0.0 0.0 8.16926455570175 0.0 60 8.00335500641869E-5 0.0 0.0 8.404643226440523 0.0 61 1.2005032509628036E-4 0.0 0.0 8.640382048154587 0.0 62 1.2005032509628036E-4 0.0 0.0 8.913976739049009 0.0 63 1.2005032509628036E-4 0.0 0.0 9.181008678838168 0.0 64 1.2005032509628036E-4 0.0 0.0 9.443238605623478 0.0 65 1.2005032509628036E-4 0.0 0.0 9.694784053475217 0.0 66 1.2005032509628036E-4 0.0 0.0 9.949850977529781 0.0 67 1.600671001283738E-4 0.0 0.0 10.199875787930301 0.0 68 1.600671001283738E-4 0.0 0.0 10.46862844904584 0.0 69 1.600671001283738E-4 0.0 0.0 10.805329594165874 0.0 70 2.0008387516046728E-4 0.0 0.0 11.07380213785619 0.0 71 2.0008387516046728E-4 0.0 0.0 11.342434748646633 0.0 72 2.4010065019256072E-4 0.0 0.0 11.614908969840156 0.0 73 2.4010065019256072E-4 0.0 0.0 11.88334149675544 0.0 74 2.801174252246542E-4 0.0 0.0 12.180946252669118 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 5805 0.0 69.11283 1 CCGATCC 1540 0.0 66.233765 80 GTTAGCG 305 0.0 65.57377 1 ACGTCGA 55 9.094947E-12 65.454544 9 GGGCGAT 1345 0.0 65.42751 7 ACGGGAT 1695 0.0 65.36873 5 AGTAGCG 185 0.0 64.86486 1 AGGGATT 5410 0.0 64.325325 6 CGATAGG 545 0.0 63.853207 2 TACGGGA 1185 0.0 63.79747 4 TAAGGGA 3635 0.0 63.603848 4 TCGCGCG 70 0.0 62.857143 1 CGTTAGG 525 0.0 62.47619 2 ATAGGGA 4215 0.0 62.253853 4 ACGTAGG 310 0.0 61.935482 2 TAGGGAC 2990 0.0 61.806026 5 TTAGGGA 3765 0.0 60.982735 4 TAACGGG 850 0.0 60.705883 3 TAGGGAT 5425 0.0 60.46083 5 CGTATGG 305 0.0 60.32787 2 >>END_MODULE