SRR1547796_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547796_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2135665
Sequences flagged as poor quality	0
Sequence length	86
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11089	0.5192293735206599	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	7819	0.36611547222996116	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	7175	0.33596093020206824	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	6296	0.2948027897633758	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	4479	0.209723903327535	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	4155	0.19455298466753915	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	3774	0.17671310809513663	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA	3194	0.1495552907408231	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2958	0.138504868506999	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2573	0.12047769664249777	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2505	0.11729367667681963	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTACCG	25	1.2851851E-6	80.0	1
TGTCGCG	85	0.0	75.29412	1
TTACGGG	565	0.0	75.04424	3
GCGTAAG	160	0.0	75.0	1
TACGGGA	795	0.0	72.45283	4
AATACGG	200	0.0	72.0	2
GCATGCG	85	0.0	70.58824	1
CGAAACG	645	0.0	70.07752	80
TCGCGTG	40	3.7161954E-9	70.0	1
ATAGCGG	435	0.0	69.885056	2
ACGGGAT	580	0.0	69.65517	5
ACGCGAG	250	0.0	68.8	1
TAACGCG	70	0.0	68.57143	1
GCGACGG	100	0.0	68.0	2
CGTAAGG	360	0.0	67.77778	2
CGTTTTT	6610	0.0	67.71558	1
TAAGGGA	2590	0.0	67.49035	4
GTGTACG	185	0.0	67.02702	1
GATCGAC	120	0.0	66.666664	8
CGGGACG	120	0.0	66.666664	6