##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547790_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2811875 Sequences flagged as poor quality 0 Sequence length 86 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.71584440986886 31.0 31.0 33.0 30.0 34.0 2 32.14720569015337 33.0 31.0 34.0 30.0 34.0 3 32.29090268948655 34.0 31.0 34.0 30.0 34.0 4 35.88574207601689 37.0 35.0 37.0 35.0 37.0 5 35.81990415647922 37.0 35.0 37.0 35.0 37.0 6 35.88373629695488 37.0 35.0 37.0 35.0 37.0 7 36.21988530784619 37.0 35.0 37.0 35.0 37.0 8 36.19643085130029 37.0 35.0 37.0 35.0 37.0 9 38.07198150700155 39.0 39.0 39.0 37.0 39.0 10-11 37.436868281840404 39.0 37.0 39.0 34.5 39.0 12-13 36.80137274949989 39.0 35.0 39.0 33.0 39.0 14-15 37.89066032451656 40.0 36.0 41.0 33.0 41.0 16-17 38.03881378084019 40.0 36.0 41.0 33.0 41.0 18-19 37.94235216714826 40.0 36.0 41.0 33.5 41.0 20-21 37.770585107801736 40.0 35.0 41.0 33.0 41.0 22-23 37.58378181818182 39.5 35.0 41.0 33.0 41.0 24-25 37.508275083351855 39.0 35.0 41.0 33.0 41.0 26-27 37.486686641475885 39.0 35.0 41.0 33.0 41.0 28-29 37.46669002000445 39.5 35.0 41.0 33.0 41.0 30-31 37.306080640142255 39.0 35.0 41.0 32.5 41.0 32-33 37.02907579462102 39.0 35.0 41.0 32.0 41.0 34-35 36.78044916648144 39.0 35.0 41.0 31.0 41.0 36-37 36.594117803956436 39.0 35.0 41.0 31.0 41.0 38-39 36.50014616581463 39.0 35.0 41.0 31.0 41.0 40-41 36.36102902867304 39.0 35.0 41.0 30.0 41.0 42-43 36.325061569237604 39.0 35.0 41.0 30.0 41.0 44-45 36.21702476105801 38.5 35.0 41.0 30.0 41.0 46-47 36.14076390308958 38.0 35.0 41.0 30.0 41.0 48-49 36.041685707935095 38.0 35.0 40.5 30.0 41.0 50-51 35.872903667481665 38.0 35.0 40.0 29.0 41.0 52-53 35.703303845298954 38.0 35.0 40.0 29.0 41.0 54-55 35.521875794621025 37.5 35.0 40.0 28.5 41.0 56-57 35.224790753500784 37.0 34.0 40.0 28.0 41.0 58-59 34.92801369193154 36.5 34.0 40.0 27.0 41.0 60-61 34.61059986663703 36.0 34.0 39.5 26.5 41.0 62-63 34.213778706379195 35.5 33.5 39.0 26.0 41.0 64-65 33.86954469882196 35.0 33.0 39.0 25.5 40.0 66-67 33.53919519893309 35.0 33.0 38.0 25.0 40.0 68-69 33.07615701266948 35.0 33.0 37.5 23.0 40.0 70-71 32.76568410757946 35.0 33.0 37.0 22.5 39.5 72-73 32.44775443431874 35.0 32.5 36.5 21.5 39.0 74-75 32.12654065347856 35.0 32.0 36.0 20.5 38.5 76-77 30.020856901533676 33.0 29.0 34.5 18.5 36.0 78-79 31.125691575905755 34.0 31.0 35.0 19.0 37.0 80-81 31.30397332740609 35.0 31.5 35.0 19.0 37.0 82-83 31.100720871304734 34.5 31.0 35.0 18.0 36.0 84-85 30.872135852411645 34.0 31.0 35.0 17.5 36.0 86 30.456554789953323 34.0 31.0 35.0 15.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 6.0 9 9.0 10 10.0 11 19.0 12 39.0 13 88.0 14 326.0 15 1110.0 16 2630.0 17 5776.0 18 10984.0 19 17353.0 20 20335.0 21 20064.0 22 19228.0 23 18875.0 24 20890.0 25 24856.0 26 30250.0 27 37059.0 28 45541.0 29 56419.0 30 69492.0 31 84110.0 32 102847.0 33 130746.0 34 279932.0 35 268765.0 36 249395.0 37 409916.0 38 586411.0 39 297367.0 40 1025.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.135238941987108 23.926703711935986 32.14143587463881 12.796621471438097 2 29.24312069348744 25.507712825072236 32.43785730162258 12.811309179817737 3 28.632460546788174 25.076185819070908 33.648117359413206 12.643236274727718 4 26.394629917759506 27.691131362525006 31.92101355856857 13.993225161146922 5 23.740493442987333 31.594825516781505 30.977017114914425 13.687663925316738 6 22.34871749277617 40.780689042009335 26.70669926650367 10.163894198710825 7 89.74282284952211 3.1689886641475886 5.745667926205823 1.342520560124472 8 90.97374527672815 2.3693798621915985 5.186610357857302 1.4702645032229384 9 86.5299133140698 5.444232051567015 6.310949099799956 1.7149055345632362 10-11 35.8414581018004 32.8454678817515 20.272202711713714 11.040871304734386 12-13 27.167334963325185 26.74012891753723 29.842507223827518 16.25002889531007 14-15 15.916159146476993 32.894349855523444 34.65033118470771 16.539159813291842 16-17 20.653051789286508 28.0097443876417 32.76121804845521 18.575985774616584 18-19 22.445467881751497 30.040062236052457 30.52200044454323 16.99246943765281 20-21 24.83206045787953 29.599413202933984 29.783187374972215 15.78533896421427 22-23 20.187828406312512 26.602356079128697 32.65216270282285 20.55765281173594 24-25 18.446285841298067 29.769655478995332 33.99381195821294 17.790246721493666 26-27 17.160293398533007 34.926499222049344 29.706885974661034 18.20632140475661 28-29 16.017817292731717 30.50599688819738 34.83170482329406 18.64448099577684 30-31 21.027197154923314 30.124543231829293 30.658421871527008 18.189837741720382 32-33 23.388077350522337 30.144174260946876 28.85770171149144 17.610046677039342 34-35 19.088010669037565 30.323129584352078 30.390468993109582 20.198390753500778 36-37 21.33231384752167 30.13611913758613 30.75421204712158 17.777354967770613 38-39 18.91783951989331 32.32280951322516 29.084863302956208 19.674487663925316 40-41 20.26124916648144 28.440097799511005 30.21362969548789 21.08502333851967 42-43 19.997172705045564 28.346103578573018 29.58648588575239 22.07023783062903 44-45 19.147970660146697 31.7940697932874 29.050562347188265 20.00739719937764 46-47 20.448721938208493 30.72442765058902 28.89708824183152 19.92976216937097 48-49 20.120346743720827 28.874363191820407 30.99166925983552 20.01362080462325 50-51 18.531780395643477 31.60478328517448 30.01646588130696 19.846970437875083 52-53 20.687797288286287 28.576430317848413 30.452278284063127 20.283494109802177 54-55 20.954309846632587 28.84200044454323 31.001182484996665 19.202507223827517 56-57 21.0723449655479 27.497683929762168 30.35033563014003 21.0796354745499 58-59 21.7478728606357 28.833198488553013 29.70473438541898 19.714194265392308 60-61 22.421871527006 30.431687041564793 27.81805734607691 19.3283840853523 62-63 21.664512113803067 29.02815736830407 29.98773060680151 19.319599911091352 64-65 19.383916425872417 31.33919537675039 30.301649255390085 18.975238941987108 66-67 18.205058901978216 31.17651033563014 27.729824405423425 22.888606356968218 68-69 17.603396310291174 32.50709935541231 27.356496999333185 22.533007334963326 70-71 19.235954656590355 31.592727272727274 28.89372749499889 20.277590575683487 72-73 21.50460102244943 30.82007557234941 27.90136474772172 19.77395865747944 74-75 20.146610357857302 32.55311847077128 26.48929984440987 20.810971326961546 76-77 23.116176928206265 30.468086241386978 26.98829073127362 19.427446099133142 78-79 18.669482107134918 30.79978661924872 29.90017337186041 20.630557901755946 80-81 16.812802845076682 29.959564347632806 30.90891309179818 22.318719715492332 82-83 18.777701711491442 28.53380751278062 31.409931095799067 21.278559679928875 84-85 17.02749944432096 28.69542565014448 30.321475883529676 23.95559902200489 86 17.857977328295178 28.662867303845296 31.123894198710822 22.355261169148697 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2119.0 1 2520.5 2 7015.5 3 7128.0 4 3527.5 5 5082.0 6 7673.5 7 9091.0 8 10068.0 9 11283.0 10 11053.5 11 9953.0 12 8835.0 13 8140.5 14 7931.0 15 7808.5 16 7386.5 17 7264.5 18 7696.0 19 9145.5 20 9392.5 21 8444.0 22 10430.5 23 12706.5 24 15683.0 25 19770.5 26 22736.5 27 28352.0 28 36186.0 29 39970.0 30 45086.0 31 53098.5 32 59945.0 33 65988.5 34 74552.0 35 86776.5 36 92531.0 37 91681.0 38 97153.5 39 103597.5 40 115181.0 41 135491.5 42 146187.0 43 148034.0 44 152242.5 45 156526.0 46 156514.0 47 157537.0 48 153439.0 49 133291.0 50 118351.0 51 104538.5 52 82047.0 53 68879.0 54 60391.0 55 52827.0 56 45319.0 57 41376.0 58 37391.0 59 27488.5 60 19171.0 61 14266.0 62 9968.5 63 6485.5 64 4795.0 65 4090.0 66 2669.5 67 1509.5 68 1038.0 69 731.0 70 321.0 71 191.0 72 147.5 73 89.5 74 77.5 75 52.0 76 18.5 77 19.0 78 57.0 79 89.0 80 61.0 81 18.5 82 5.0 83 4.5 84 2.5 85 1.5 86 1.0 87 1.5 88 1.0 89 0.5 90 0.5 91 0.0 92 0.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2811875.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.0969847947312 #Duplication Level Percentage of deduplicated Percentage of total 1 77.40059482281866 13.233167927888811 2 9.542853755849357 3.2630805112420003 3 3.157700055065138 1.619614494833116 4 1.5775576799740054 1.07885918669308 5 0.9642293449943714 0.8242707225001195 6 0.7197198785205159 0.7383023891718626 7 0.5328377419100794 0.6376943140046873 8 0.40602570429551066 0.5553452234088299 9 0.3527674498941529 0.542813375422479 >10 2.7720723417389417 10.289470020348935 >50 0.9267351574885878 11.558346593479062 >100 1.6330700446359954 53.01489610691485 >500 0.010272198756472313 1.1561410820816826 >1k 0.003354187349052184 0.890017526436195 >5k 0.0 0.0 >10k+ 2.096367093157615E-4 0.5979805255743186 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16684 0.5933407423871971 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.112691709268727E-5 0.0 0.0 0.08730829073127362 0.0 2 7.112691709268727E-5 0.0 0.0 0.25303400755723493 0.0 3 7.112691709268727E-5 0.0 0.0 0.3548166259168704 0.0 4 7.112691709268727E-5 0.0 0.0 0.5084507668370749 0.0 5 7.112691709268727E-5 0.0 0.0 0.8518515225605691 0.0 6 7.112691709268727E-5 0.0 0.0 1.1011513669704378 0.0 7 7.112691709268727E-5 0.0 0.0 1.2914158701933762 0.0 8 1.0669037563903089E-4 0.0 0.0 1.701426983774172 0.0 9 1.0669037563903089E-4 0.0 0.0 1.8228406312513892 0.0 10 1.0669037563903089E-4 0.0 0.0 2.064814403200711 0.0 11 1.0669037563903089E-4 0.0 0.0 2.50348966436986 0.0 12 1.0669037563903089E-4 0.0 0.0 2.830460102244943 0.0 13 1.0669037563903089E-4 0.0 0.0 2.939746610357857 0.0 14 1.0669037563903089E-4 0.0 0.0 2.982067126028006 0.0 15 1.0669037563903089E-4 0.0 0.0 3.04661480328962 0.0 16 1.0669037563903089E-4 0.0 0.0 3.195021115803512 0.0 17 1.0669037563903089E-4 0.0 0.0 3.4165458990886863 0.0 18 1.0669037563903089E-4 0.0 0.0 3.663960880195599 0.0 19 1.0669037563903089E-4 0.0 0.0 3.84476550344521 0.0 20 1.0669037563903089E-4 0.0 0.0 4.018350744609913 0.0 21 1.0669037563903089E-4 0.0 0.0 4.2254367637252725 0.0 22 1.0669037563903089E-4 0.0 0.0 4.482951767059347 0.0 23 1.0669037563903089E-4 0.0 0.0 4.741213603022894 0.0 24 1.0669037563903089E-4 0.0 0.0 4.921911535896866 0.0 25 1.0669037563903089E-4 0.0 0.0 5.084436541453656 0.0 26 1.0669037563903089E-4 0.0 0.0 5.235687930651256 0.0 27 1.0669037563903089E-4 0.0 0.0 5.3988530784618805 0.0 28 1.0669037563903089E-4 0.0 0.0 5.574572127139365 0.0 29 1.0669037563903089E-4 0.0 0.0 5.786530340075572 0.0 30 1.0669037563903089E-4 0.0 0.0 6.013460769059791 0.0 31 1.0669037563903089E-4 0.0 0.0 6.224494332073794 0.0 32 1.0669037563903089E-4 0.0 0.0 6.413407423871972 0.0 33 1.0669037563903089E-4 0.0 0.0 6.607121582573905 0.0 34 1.0669037563903089E-4 0.0 0.0 6.81026005779062 0.0 35 1.0669037563903089E-4 0.0 0.0 7.040889086463658 0.0 36 1.4225383418537454E-4 0.0 0.0 7.25651033563014 0.0 37 1.4225383418537454E-4 0.0 0.0 7.466085796843743 0.0 38 1.4225383418537454E-4 0.0 0.0 7.709588797510558 0.0 39 1.4225383418537454E-4 0.0 0.0 8.027063791953767 0.0 40 1.4225383418537454E-4 0.0 0.0 8.279457657257169 0.0 41 1.4225383418537454E-4 0.0 0.0 8.519724383196266 0.0 42 1.4225383418537454E-4 0.0 0.0 8.77062458324072 0.0 43 1.4225383418537454E-4 0.0 0.0 9.02312513891976 0.0 44 1.7781729273171816E-4 0.0 0.0 9.26278728606357 0.0 45 1.7781729273171816E-4 0.0 0.0 9.512620582351634 0.0 46 1.7781729273171816E-4 0.0 0.0 9.773585241164703 0.0 47 1.7781729273171816E-4 0.0 0.0 10.042373860857968 0.0 48 1.7781729273171816E-4 0.0 0.0 10.314469882196043 0.0 49 2.1338075127806178E-4 0.0 0.0 10.593820849077574 0.0 50 2.1338075127806178E-4 0.0 0.0 10.889851078017337 0.0 51 2.1338075127806178E-4 0.0 0.0 11.17354078684152 0.0 52 2.1338075127806178E-4 0.0 0.0 11.494358746388086 0.0 53 2.1338075127806178E-4 0.0 0.0 11.785374527672817 0.0 54 2.1338075127806178E-4 0.0 0.0 12.090935763503001 0.0 55 2.1338075127806178E-4 0.0 0.0 12.394469882196043 0.0 56 2.1338075127806178E-4 0.0 0.0 12.693736385863525 0.0 57 2.1338075127806178E-4 0.0 0.0 13.013771949322072 0.0 58 2.1338075127806178E-4 0.0 0.0 13.313891975994666 0.0 59 2.1338075127806178E-4 0.0 0.0 13.630620137808402 0.0 60 2.1338075127806178E-4 0.0 0.0 13.949446543676373 0.0 61 2.4894420982440543E-4 0.0 0.0 14.275456768170704 0.0 62 2.4894420982440543E-4 0.0 0.0 14.635927983996444 0.0 63 2.4894420982440543E-4 0.0 0.0 14.99924427650589 0.0 64 2.845076683707491E-4 0.0 0.0 15.349722160480107 3.5563458546343635E-5 65 2.845076683707491E-4 0.0 0.0 15.691166925983552 3.5563458546343635E-5 66 2.845076683707491E-4 0.0 0.0 16.01507890642365 3.5563458546343635E-5 67 2.845076683707491E-4 0.0 0.0 16.349019782173816 3.5563458546343635E-5 68 2.845076683707491E-4 0.0 0.0 16.709206490331184 3.5563458546343635E-5 69 3.2007112691709267E-4 0.0 0.0 17.173523005112248 3.5563458546343635E-5 70 3.2007112691709267E-4 0.0 0.0 17.526810402311625 3.5563458546343635E-5 71 3.2007112691709267E-4 0.0 0.0 17.882765058901978 3.5563458546343635E-5 72 3.2007112691709267E-4 0.0 0.0 18.227019337630583 3.5563458546343635E-5 73 3.9119804400977997E-4 0.0 0.0 18.592256056901533 3.5563458546343635E-5 74 3.9119804400977997E-4 0.0 0.0 18.984236496999333 3.5563458546343635E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 7900 0.0 69.06329 1 TAGGGAC 3545 0.0 66.00846 5 GTAAGCG 310 0.0 65.80645 1 TAAGGGA 4685 0.0 65.14407 4 CGAGGGA 1910 0.0 65.13089 4 TGCGGGC 375 0.0 65.066666 4 GACCGAT 535 0.0 65.04673 9 TCGCGCG 50 3.0013325E-10 64.0 1 TAGGGAG 3830 0.0 63.91645 5 CGGGACT 1315 0.0 63.87833 6 TACGGGA 1495 0.0 63.678932 4 ACGGGAC 1075 0.0 63.627907 5 CGAACGG 145 0.0 63.44828 2 AGGGATT 7115 0.0 63.302887 6 CTAGCGG 330 0.0 63.030304 2 ATTAGCG 315 0.0 62.222225 1 CCGAGGG 620 0.0 61.935482 3 AGCGGGA 2665 0.0 61.838646 4 TAGCGGG 2035 0.0 61.32678 3 CGACCGG 85 0.0 61.17647 2 >>END_MODULE