##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547789_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4976089 Sequences flagged as poor quality 0 Sequence length 86 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.763659773770122 31.0 31.0 33.0 30.0 34.0 2 32.20692897574782 33.0 31.0 34.0 30.0 34.0 3 32.27135567711912 33.0 31.0 34.0 30.0 34.0 4 35.914431996694596 37.0 35.0 37.0 35.0 37.0 5 35.883923699917744 37.0 35.0 37.0 35.0 37.0 6 35.94853146718236 37.0 35.0 37.0 35.0 37.0 7 36.238895244839874 37.0 35.0 37.0 35.0 37.0 8 36.20536007294082 37.0 36.0 37.0 35.0 37.0 9 38.066257054485966 39.0 39.0 39.0 37.0 39.0 10-11 37.53087163432969 39.0 37.5 39.0 35.0 39.0 12-13 37.146399009342474 39.0 37.0 39.0 33.5 39.0 14-15 38.367156917812366 40.0 38.0 41.0 33.0 41.0 16-17 38.43684216660916 40.0 37.5 41.0 34.0 41.0 18-19 38.188380372617935 40.0 37.0 41.0 34.0 41.0 20-21 37.906920475096 40.0 35.0 41.0 33.5 41.0 22-23 37.713993961924714 40.0 35.0 41.0 33.0 41.0 24-25 37.613135637244426 40.0 35.0 41.0 33.0 41.0 26-27 37.56469026176984 40.0 35.0 41.0 33.0 41.0 28-29 37.478086907207654 40.0 35.0 41.0 33.0 41.0 30-31 37.22760063174111 40.0 35.0 41.0 32.5 41.0 32-33 36.738798884023176 40.0 35.0 41.0 30.5 41.0 34-35 36.26405556653026 39.0 35.0 41.0 29.5 41.0 36-37 36.0134122400142 39.0 35.0 41.0 28.5 41.0 38-39 35.86847592557126 39.0 35.0 41.0 27.0 41.0 40-41 35.7138700694461 39.0 35.0 41.0 26.5 41.0 42-43 35.626938545512346 39.0 35.0 41.0 26.0 41.0 44-45 35.52911533535674 39.0 35.0 41.0 25.0 41.0 46-47 35.44937992467578 39.0 35.0 41.0 25.0 41.0 48-49 35.30782518158337 38.0 35.0 41.0 24.0 41.0 50-51 35.13792508534313 38.0 35.0 40.0 24.0 41.0 52-53 34.951988499401835 38.0 34.0 40.0 24.0 41.0 54-55 34.765955753604885 38.0 34.0 40.0 23.5 41.0 56-57 34.495305449721656 37.0 34.0 40.0 23.0 41.0 58-59 34.219907340885584 37.0 34.0 40.0 22.0 41.0 60-61 33.903871795701406 36.0 33.5 40.0 22.0 41.0 62-63 33.571988262267816 36.0 33.0 39.0 21.0 41.0 64-65 33.21532914704701 35.0 33.0 39.0 20.0 40.5 66-67 32.874060431796934 35.0 33.0 38.5 19.0 40.0 68-69 32.38740826379914 35.0 32.0 37.5 17.5 40.0 70-71 32.06852791419124 35.0 32.0 37.0 16.0 39.5 72-73 31.767201008663633 35.0 32.0 37.0 15.0 39.0 74-75 31.45229607026723 35.0 31.5 36.0 14.0 39.0 76-77 29.40732802407674 33.0 28.0 34.5 10.5 36.0 78-79 30.568991129378915 34.0 30.5 35.0 11.0 37.0 80-81 30.659014036927395 35.0 31.0 35.0 11.0 37.0 82-83 30.46153455052753 34.5 31.0 35.0 10.0 36.0 84-85 30.225296412503877 34.0 30.5 35.0 10.0 36.0 86 29.78818666627546 34.0 29.0 35.0 10.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 6.0 9 22.0 10 27.0 11 29.0 12 82.0 13 272.0 14 976.0 15 3115.0 16 7990.0 17 18378.0 18 40858.0 19 65844.0 20 73180.0 21 66985.0 22 55207.0 23 45848.0 24 43024.0 25 45576.0 26 51937.0 27 61040.0 28 73422.0 29 89894.0 30 109860.0 31 134220.0 32 161159.0 33 200381.0 34 378589.0 35 420726.0 36 446253.0 37 733888.0 38 1085574.0 39 559699.0 40 2026.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.101893274014994 23.547589281461807 29.536509495710384 16.81400794881281 2 33.82988125815274 24.43822849631508 29.420454497497932 12.31143574803425 3 27.435361385216382 23.922301228937023 36.382367759097555 12.25996962674904 4 25.147982682785617 26.078291606118782 35.31026072885754 13.463464982238058 5 23.038936803582093 29.983547319993676 33.77554139405465 13.201974482369588 6 21.156916606596063 39.24634386563424 29.561710009607943 10.035029518161753 7 84.4447114993321 3.298232808938908 10.80107289077828 1.4559828009507063 8 85.29656523426328 2.904791292921007 10.38084326867948 1.4178002041362203 9 80.73456885517923 5.71235763669018 11.527366170500567 2.0257073376300143 10-11 30.33377216524865 32.44419462754786 25.867674392479717 11.354358814723772 12-13 24.706139701279458 24.3564875949767 33.86242689791119 17.07494580583265 14-15 16.59395561453985 30.607742345444382 36.014438246582806 16.783863793432953 16-17 21.650316141853573 29.169022097474546 33.25710211372827 15.923559646943614 18-19 21.251237668779638 29.699247742554448 32.944306261403284 16.105208327262634 20-21 23.547187359390076 29.001822515634267 32.94630582371015 14.504684301265511 22-23 20.488138375338544 25.455262154676088 35.602568603576024 18.454030866409344 24-25 18.90913727628264 29.489966919803884 34.81993589744878 16.780959906464695 26-27 18.22359889463392 32.97112451163956 31.951679320848157 16.85359727287836 28-29 16.71748636328651 30.079877992535902 35.81283413540232 17.389801508775264 30-31 19.760197215122158 29.30211859152841 33.242452054213665 17.695232139135776 32-33 21.187151194442063 29.612100989351276 32.04403096488025 17.156716851326415 34-35 19.02296160699698 30.0557928123874 32.016951465297346 18.904294115318276 36-37 20.523658238427807 30.662162593956822 30.985498852612963 17.828680315002405 38-39 19.139599392213444 31.576284105851 30.33321952240002 18.950896979535532 40-41 19.675301225520688 29.72660858758756 30.731664968210982 19.866425218680774 42-43 19.74316576733254 30.24994126913727 30.251759966511855 19.75513299701834 44-45 19.44356300701213 31.472638451603256 29.81358452391024 19.270214017474366 46-47 19.982962523379307 30.938564402686524 29.828566169134035 19.249906904800135 48-49 19.93065236574346 30.147772678503138 30.82257974083663 19.098995214916776 50-51 18.8304811268448 31.085888938079687 30.793159045185885 19.29047088988963 52-53 19.921076572384457 29.61173925948672 30.751027564016642 19.716156604112186 54-55 19.81904865447543 29.721966387659066 31.243261525266124 19.215723432599376 56-57 19.977405950737616 29.395434848532652 30.962297901022268 19.66486129970746 58-59 20.468886308102608 30.200344085485607 30.024834764812287 19.3059348415995 60-61 20.824587341584927 31.115962757096987 29.10691508934024 18.952534811977838 62-63 20.450779718771106 29.77116164923899 30.39794907205237 19.380109559937534 64-65 19.645669520782285 31.829414626627457 29.949303559482154 18.5756122931081 66-67 18.967807850703636 31.78449983511147 28.3628970462546 20.884795267930294 68-69 18.364100802859433 32.7223447972896 28.264024216608668 20.6495301832423 70-71 19.151677150468974 31.79985325825161 29.136667370700163 19.911802220579254 72-73 20.1107737421899 31.66283802399836 28.85755258798627 19.368835645825467 74-75 19.514411820206593 32.13312704013131 27.88772467695011 20.46473646271198 76-77 20.78258648508899 30.842515075594505 28.54668596160559 19.82821247771091 78-79 18.889945497357463 31.112556467539065 29.583484137843996 20.414013897259476 80-81 17.728983545109422 31.19903000127208 29.504848084509742 21.56713836910875 82-83 18.95376067429662 30.68625782215712 30.093312237783525 20.26666926576273 84-85 18.253441608459976 30.268299059763603 29.298169707173642 22.180089624602775 86 18.013443891377346 30.461091029521377 29.86807510878523 21.657389970316046 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2687.0 1 3432.5 2 31320.0 3 34971.0 4 12103.5 5 15618.5 6 21700.0 7 24890.0 8 27234.0 9 29817.5 10 29043.5 11 27394.0 12 25970.5 13 24906.0 14 24629.0 15 24414.0 16 24168.5 17 24058.0 18 24578.0 19 25437.5 20 26756.0 21 27815.0 22 28663.0 23 31722.0 24 35897.0 25 40734.5 26 46391.5 27 53050.0 28 63128.5 29 69332.0 30 78834.5 31 93666.0 32 102022.0 33 115013.5 34 132033.5 35 142202.5 36 145316.0 37 154886.5 38 172135.0 39 183685.5 40 196974.5 41 215036.0 42 228521.0 43 233361.0 44 241678.5 45 249688.5 46 245776.0 47 239754.0 48 232068.5 49 218354.0 50 209908.0 51 185915.5 52 154905.5 53 135606.0 54 115486.0 55 97843.0 56 79789.0 57 71540.0 58 61698.5 59 46878.5 60 35527.5 61 26873.0 62 21267.5 63 14257.5 64 10571.0 65 8706.0 66 5696.0 67 3412.5 68 1951.5 69 1305.5 70 835.0 71 688.0 72 650.0 73 440.5 74 284.5 75 212.5 76 116.5 77 81.5 78 55.0 79 55.0 80 42.0 81 19.5 82 12.5 83 11.5 84 5.0 85 4.5 86 7.0 87 5.0 88 2.5 89 2.0 90 1.0 91 0.5 92 1.0 93 1.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 4976089.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.10479561180516 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4934594086597 14.211080394573084 2 8.044389624229115 2.9128405993678848 3 2.8302082847778047 1.5372102760421942 4 1.5665224369754636 1.1344627417099078 5 1.0392579679305558 0.9407776548661336 6 0.7733671542143068 0.8400992555960054 7 0.6088909344255585 0.7716692142359055 8 0.48129076341891 0.6970936721239228 9 0.4005505615852844 0.6526697444725813 >10 3.3110628222928487 13.37341275120402 >50 1.0646977527587604 14.000237653628709 >100 1.3757988741434226 45.02707478373902 >500 0.007566976101295576 0.9000805110368139 >1k 0.002823498545259091 0.9474779218043939 >5k 0.0 0.0 >10k+ 1.1293994181036365E-4 2.053812825599386 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 100443 2.0185129325460216 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.0192207173143404E-5 0.0 0.0 0.037479233188956226 0.0 2 4.0192207173143404E-5 0.0 0.0 0.1080165567778229 0.0 3 4.0192207173143404E-5 0.0 0.0 0.1616530572503828 0.0 4 4.0192207173143404E-5 0.0 0.0 0.2489304351268637 0.0 5 4.0192207173143404E-5 0.0 0.0 0.4781465926353005 0.0 6 4.0192207173143404E-5 0.0 0.0 0.7448419833326936 0.0 7 4.0192207173143404E-5 0.0 0.0 0.9517514658600359 0.0 8 4.0192207173143404E-5 0.0 0.0 1.266958850615413 0.0 9 4.0192207173143404E-5 0.0 4.0192207173143404E-5 1.408756957522263 0.0 10 4.0192207173143404E-5 0.0 4.0192207173143404E-5 1.5998709026305598 0.0 11 4.0192207173143404E-5 0.0 4.0192207173143404E-5 1.8887121994803548 0.0 12 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.0820970042939346 0.0 13 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.15633201094273 0.0 14 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.191399711701298 0.0 15 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.2365154642531513 0.0 16 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.3233105356435546 0.0 17 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.4497351233066773 0.0 18 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.5890614094723787 0.0 19 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.694385088369601 0.0 20 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.8030648165657808 0.0 21 4.0192207173143404E-5 0.0 4.0192207173143404E-5 2.9326846846991685 0.0 22 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.0934133211845687 0.0 23 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.2516098486180613 0.0 24 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.3731108909024736 0.0 25 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.4776307256562333 0.0 26 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.5794375864258057 0.0 27 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.690749904191826 0.0 28 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.8124920997192775 0.0 29 4.0192207173143404E-5 0.0 4.0192207173143404E-5 3.9559179910166398 0.0 30 4.0192207173143404E-5 0.0 4.0192207173143404E-5 4.112607310681139 0.0 31 4.0192207173143404E-5 0.0 4.0192207173143404E-5 4.2546666669346145 0.0 32 4.0192207173143404E-5 0.0 4.0192207173143404E-5 4.38752200774544 0.0 33 4.0192207173143404E-5 0.0 4.0192207173143404E-5 4.523934358891089 0.0 34 4.0192207173143404E-5 0.0 4.0192207173143404E-5 4.671741200770324 0.0 35 4.0192207173143404E-5 0.0 4.0192207173143404E-5 4.82967647885719 0.0 36 4.0192207173143404E-5 0.0 4.0192207173143404E-5 4.984275803748687 0.0 37 4.0192207173143404E-5 0.0 4.0192207173143404E-5 5.143617809086614 0.0 38 4.0192207173143404E-5 0.0 4.0192207173143404E-5 5.324784182919558 0.0 39 4.0192207173143404E-5 0.0 4.0192207173143404E-5 5.568067612938595 0.0 40 4.0192207173143404E-5 0.0 4.0192207173143404E-5 5.758156656763977 0.0 41 4.0192207173143404E-5 0.0 4.0192207173143404E-5 5.948285892796531 0.0 42 4.0192207173143404E-5 0.0 4.0192207173143404E-5 6.1426955988930265 0.0 43 6.028831075971511E-5 0.0 4.0192207173143404E-5 6.332623873889715 0.0 44 6.028831075971511E-5 0.0 4.0192207173143404E-5 6.5173271619538955 0.0 45 6.028831075971511E-5 0.0 4.0192207173143404E-5 6.7129627303691715 0.0 46 6.028831075971511E-5 0.0 4.0192207173143404E-5 6.915410877900295 0.0 47 6.028831075971511E-5 0.0 4.0192207173143404E-5 7.1285300564358876 0.0 48 6.028831075971511E-5 0.0 4.0192207173143404E-5 7.340564045377806 0.0 49 6.028831075971511E-5 0.0 4.0192207173143404E-5 7.559511093953504 0.0 50 6.028831075971511E-5 0.0 4.0192207173143404E-5 7.7809500593739385 0.0 51 6.028831075971511E-5 0.0 4.0192207173143404E-5 8.008357567559584 0.0 52 6.028831075971511E-5 0.0 4.0192207173143404E-5 8.268481532384168 0.0 53 6.028831075971511E-5 0.0 4.0192207173143404E-5 8.491889915956085 0.0 54 6.028831075971511E-5 0.0 4.0192207173143404E-5 8.723316644859045 0.0 55 6.028831075971511E-5 0.0 4.0192207173143404E-5 8.958360672407588 0.0 56 1.0048051793285852E-4 0.0 4.0192207173143404E-5 9.194007583063728 0.0 57 1.0048051793285852E-4 0.0 4.0192207173143404E-5 9.43098083655658 0.0 58 1.0048051793285852E-4 0.0 4.0192207173143404E-5 9.67243552114924 0.0 59 1.0048051793285852E-4 0.0 4.0192207173143404E-5 9.914613665471016 0.0 60 1.2057662151943022E-4 0.0 4.0192207173143404E-5 10.175842915992861 0.0 61 1.4067272510600193E-4 0.0 4.0192207173143404E-5 10.438318124937075 0.0 62 1.4067272510600193E-4 0.0 4.0192207173143404E-5 10.727601536065773 0.0 63 1.4067272510600193E-4 0.0 4.0192207173143404E-5 11.020060131561152 0.0 64 1.4067272510600193E-4 0.0 4.0192207173143404E-5 11.298250493510064 0.0 65 1.4067272510600193E-4 0.0 4.0192207173143404E-5 11.558133305091609 0.0 66 1.4067272510600193E-4 0.0 4.0192207173143404E-5 11.826577056801034 0.0 67 1.4067272510600193E-4 0.0 4.0192207173143404E-5 12.091704951418674 0.0 68 1.4067272510600193E-4 0.0 4.0192207173143404E-5 12.390895741615553 0.0 69 1.4067272510600193E-4 0.0 4.0192207173143404E-5 12.751841858133968 0.0 70 1.4067272510600193E-4 0.0 4.0192207173143404E-5 13.047334965270919 0.0 71 1.6076882869257362E-4 0.0 4.0192207173143404E-5 13.346023352878134 0.0 72 1.6076882869257362E-4 0.0 4.0192207173143404E-5 13.637537431504944 0.0 73 1.8086493227914533E-4 0.0 4.0192207173143404E-5 13.936487068458783 0.0 74 2.0096103586571704E-4 0.0 4.0192207173143404E-5 14.250348014273861 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 39565 0.0 75.56174 1 TACGCGG 265 0.0 67.92453 2 GCGCGAG 320 0.0 67.5 1 TCGATAG 465 0.0 67.09677 1 CGGGATC 1990 0.0 66.93468 6 GCGCGAC 120 0.0 66.666664 9 GCGGGAT 4350 0.0 66.114944 5 TAGGGAC 6175 0.0 65.748985 5 GGGCGAT 2970 0.0 65.589226 7 GTTAGCG 435 0.0 65.28735 1 CGATAGG 935 0.0 64.59893 2 CGTAAGG 775 0.0 64.51613 2 CGAGGGA 4245 0.0 64.45229 4 TACGGGA 2615 0.0 64.09178 4 ACGGGAC 1870 0.0 63.95722 5 AGCGGGA 4920 0.0 63.252033 4 TTAGGGA 9125 0.0 62.860275 4 AGGGATC 7720 0.0 62.538864 6 TGCGGGA 5080 0.0 61.574802 4 AGGGATT 13005 0.0 61.54556 6 >>END_MODULE