##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547788_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2839307 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.71083683448109 31.0 31.0 33.0 30.0 34.0 2 32.153136311078725 33.0 31.0 34.0 30.0 34.0 3 32.3019979875371 34.0 31.0 34.0 30.0 34.0 4 35.89403717174648 37.0 35.0 37.0 35.0 37.0 5 35.84164692299917 37.0 35.0 37.0 35.0 37.0 6 35.901490046690974 37.0 35.0 37.0 35.0 37.0 7 36.18466900550028 37.0 35.0 37.0 35.0 37.0 8 36.139141346814554 37.0 35.0 37.0 35.0 37.0 9 38.00983373759865 39.0 39.0 39.0 35.0 39.0 10-11 37.43663629892787 39.0 37.0 39.0 34.5 39.0 12-13 36.52793850753018 39.0 35.0 39.0 33.0 39.0 14-15 37.515497619665645 40.0 35.0 41.0 33.0 41.0 16-17 37.74217493916649 40.0 35.0 41.0 33.0 41.0 18-19 37.65651653730998 39.0 36.0 41.0 33.0 41.0 20-21 37.47235839590435 39.0 35.0 41.0 33.0 41.0 22-23 37.26397656188641 39.0 35.0 41.0 33.0 41.0 24-25 37.19756440568068 39.0 35.0 41.0 33.0 41.0 26-27 37.16982700356108 39.0 35.0 41.0 33.0 41.0 28-29 37.185408270398376 39.0 35.0 41.0 33.0 41.0 30-31 37.045667129338256 39.0 35.0 41.0 32.5 41.0 32-33 36.74065291284106 39.0 35.0 41.0 31.5 41.0 34-35 36.475725062488834 39.0 35.0 41.0 31.0 41.0 36-37 36.27947136396311 38.0 35.0 41.0 30.0 41.0 38-39 36.21194449913306 38.0 35.0 41.0 30.0 41.0 40-41 36.05135003013059 38.0 35.0 41.0 30.0 41.0 42-43 36.00243545343987 38.0 35.0 41.0 30.0 41.0 44-45 35.88919549735199 38.0 35.0 41.0 30.0 41.0 46-47 35.80996472026449 38.0 35.0 40.0 30.0 41.0 48-49 35.717353037202386 38.0 35.0 40.0 29.0 41.0 50-51 35.555645268370064 37.0 35.0 40.0 29.0 41.0 52-53 35.386033810362875 37.0 34.5 40.0 28.5 41.0 54-55 35.184402391146854 37.0 34.0 40.0 28.0 41.0 56-57 34.88837399407672 36.0 34.0 40.0 27.5 41.0 58-59 34.591246032922825 36.0 34.0 40.0 26.0 41.0 60-61 34.27454727509213 35.0 34.0 39.0 26.0 41.0 62-63 33.86522028086431 35.0 33.5 39.0 25.5 40.5 64-65 33.54947281149943 35.0 33.0 38.5 25.0 40.0 66-67 33.261855445712634 35.0 33.0 38.0 24.0 40.0 68-69 32.85889673078677 35.0 33.0 37.0 22.5 40.0 70-71 32.611656118905074 35.0 33.0 36.5 22.5 39.0 72-73 32.33838204181514 35.0 32.5 36.0 21.5 39.0 74-75 32.04503634161434 35.0 32.0 36.0 20.5 38.5 76-77 29.956012858067126 33.0 29.0 34.5 18.5 36.0 78-79 31.04750067534085 34.0 30.5 35.0 19.0 37.0 80-81 31.329323493373558 34.5 31.5 35.0 19.0 36.5 82-83 31.186463457456345 34.5 31.5 35.0 19.0 36.0 84-85 30.97367368164133 34.0 31.0 35.0 18.0 36.0 86 30.577433859741127 34.0 31.0 35.0 17.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 13.0 10 10.0 11 15.0 12 48.0 13 136.0 14 399.0 15 1261.0 16 2807.0 17 5901.0 18 11690.0 19 18182.0 20 22429.0 21 23310.0 22 22111.0 23 21307.0 24 23163.0 25 26688.0 26 31898.0 27 38644.0 28 46776.0 29 57029.0 30 70544.0 31 85578.0 32 104396.0 33 137753.0 34 335924.0 35 304810.0 36 235006.0 37 391307.0 38 543809.0 39 275305.0 40 1051.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.815580351120893 24.319525856133204 30.80477031895459 13.060123473791316 2 29.851439101160953 26.334630246042433 31.171761278368276 12.642169374428338 3 28.43408620483801 25.366330587005915 33.09247643879299 13.107106769363089 4 26.70581236900413 26.913292574561325 32.312708699693275 14.068186356741275 5 23.760762749501904 31.510188929904377 29.714609938270147 15.014438382323576 6 23.058866124726915 39.43321380886252 26.36928659000242 11.138633476408152 7 87.50814899551193 4.1389677128961395 6.424243662273928 1.928639629317999 8 88.2594590863193 3.439219499687776 6.169463182389224 2.131858231603698 9 83.84003561432421 5.813742578734882 7.696385068610051 2.6498367383308676 10-11 40.6381204991218 28.29396398487377 20.21507360775006 10.852841908254373 12-13 30.665017907538704 26.30110093765838 27.358682946225965 15.675198208576951 14-15 15.54148600345084 32.912608604846184 35.079739527990455 16.46616586371252 16-17 19.753394050026994 26.125459487121326 33.52973102239385 20.59141544045783 18-19 23.01385514141303 27.83254857611382 30.63108357074455 18.522512711728602 20-21 25.59897538378203 28.210985990595596 29.44343461274177 16.74660401288061 22-23 20.577609254652632 25.063739144798365 31.7443834005974 22.614268199951606 24-25 18.55778540326918 26.75165101906909 35.69957387489271 18.99098970276902 26-27 17.20009495274727 35.34961171863416 29.029495577618057 18.42079775100051 28-29 15.557704749785776 28.091115191136428 37.05501025426275 19.296169804815047 30-31 21.192935459251146 28.915506495070805 31.51300651884421 18.378551526833835 32-33 24.50877978323584 28.611206889568475 28.90883233126957 17.97118099592612 34-35 18.738428074174436 28.84483784247353 30.44334409769708 21.97338998565495 36-37 21.668368372986787 29.323739912591346 31.249579562900383 17.75831215152148 38-39 18.455577364476614 31.44388754016385 29.26182339563844 20.838711699721095 40-41 20.13711444377096 27.219987130662517 29.544128197479175 23.098770228087346 42-43 20.84498083511223 25.708139345269814 29.150651902031022 24.296227917586933 44-45 18.425429162820365 31.98572750322526 28.933556674216632 20.655286659737744 46-47 20.141287997388094 30.43769130988653 28.170465539654572 21.250555153070803 48-49 20.581430609652283 27.004441576765036 31.801333917043845 20.61279389653884 50-51 18.08295122718325 31.41095696942951 29.925823449172633 20.580268354214603 52-53 21.88692522506372 26.160644129007537 30.966253385068963 20.98617726085978 54-55 21.613759977346586 27.564560648073634 30.643005493946234 20.17867388063355 56-57 22.2661022566422 24.89517688647265 29.9853274055958 22.853393451289346 58-59 22.79094863641022 27.222012272713027 29.079049923097433 20.90798916777932 60-61 23.207282622132794 29.537277934369193 27.746893872342792 19.508545571155214 62-63 22.510739416343494 26.391140514217028 30.75190530647091 20.34621476296857 64-65 18.99477583790693 30.84900646531002 30.34700016588555 19.809217530897506 66-67 17.475743200717638 29.790896158816217 26.305380150860756 26.427980489605385 68-69 17.60223533418542 32.582052592410754 25.335865406593932 24.479846666809895 70-71 18.702380545675407 30.519700757966646 28.942115100621386 21.835803595736568 72-73 21.91742562533745 30.179600162997524 27.51197739448393 20.390996817181094 74-75 21.100747471125878 32.020172528014754 25.189738200201667 21.689341800657697 76-77 25.328469235626862 28.330803960262134 26.521348343099216 19.819378461011787 78-79 18.5767865186822 29.84934351938695 30.273672413726306 21.300197548204544 80-81 15.60111322939013 29.1713083509462 31.602324088237022 23.62525433142665 82-83 18.357208290614576 26.81886812521506 32.107429735495316 22.716493848675047 84-85 16.18095542327758 27.26605470982884 30.33143298699295 26.221556879900625 86 16.733132415762014 27.329450460975163 31.755178288223146 24.182238835039676 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2652.0 1 2754.5 2 6189.0 3 6220.0 4 3434.5 5 4494.5 6 5534.5 7 6030.0 8 6369.0 9 6647.5 10 6364.5 11 6104.5 12 6037.5 13 5906.0 14 5804.0 15 5830.0 16 5937.0 17 6565.5 18 7218.5 19 7965.0 20 8277.5 21 7949.0 22 8292.5 23 9926.5 24 12379.5 25 15789.5 26 20866.5 27 26666.5 28 30285.5 29 30934.0 30 37078.0 31 48235.5 32 56611.5 33 64516.0 34 67211.0 35 67671.5 36 69979.0 37 75372.5 38 88231.5 39 96743.0 40 112317.0 41 132990.0 42 149342.5 43 159550.0 44 164133.5 45 169613.5 46 172141.5 47 173101.5 48 166873.0 49 145276.5 50 129237.0 51 109953.5 52 85363.0 53 72135.0 54 62455.5 55 60573.5 56 55301.0 57 50152.0 58 46252.5 59 36462.5 60 25969.0 61 19030.0 62 15154.0 63 10633.5 64 7653.0 65 6010.5 66 3894.0 67 3005.0 68 2018.5 69 1406.0 70 938.5 71 512.0 72 451.0 73 415.0 74 384.0 75 270.0 76 150.5 77 85.5 78 59.5 79 37.0 80 33.0 81 21.0 82 11.0 83 7.5 84 5.0 85 4.0 86 4.0 87 3.0 88 2.5 89 2.5 90 1.5 91 1.0 92 0.5 93 0.0 94 0.5 95 0.5 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2839307.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.00786444195678 #Duplication Level Percentage of deduplicated Percentage of total 1 78.20279642378891 11.736569677101667 2 10.042511783884063 3.014333110185712 3 3.356552771413198 1.5112406695693086 4 1.6262589099342946 0.9762669307127316 5 0.8947392367411792 0.6714062587955747 6 0.5845267469370361 0.5263498908437408 7 0.4178256882842963 0.43894699030966056 8 0.31674560968277465 0.3802940138163228 9 0.2546597248792191 0.3439708766831997 >10 1.9899615451846135 6.292163879653305 >50 0.585332060327727 6.405875379745578 >100 1.6678567458021698 61.212149114561996 >500 0.05574482251436083 4.829229145728675 >1k 0.0040155168760344665 0.9398045473941694 >5k 2.36206875060851E-4 0.18823741641820524 >10k+ 2.36206875060851E-4 0.5331620984801896 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15040 0.5297067206892386 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 5310 0.18701746588163942 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3207 0.11295009662569071 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0565958524386409E-4 0.0 0.0 0.08012518547659693 0.0 2 1.0565958524386409E-4 0.0 0.0 0.26379676449218065 0.0 3 1.0565958524386409E-4 0.0 0.0 0.37163998116441793 0.0 4 1.0565958524386409E-4 0.0 0.0 0.5632008092115435 0.0 5 1.0565958524386409E-4 0.0 0.0 0.9633336585300568 0.0 6 1.0565958524386409E-4 0.0 0.0 1.2559754897938125 0.0 7 1.0565958524386409E-4 0.0 0.0 1.4569048010658938 0.0 8 1.0565958524386409E-4 0.0 0.0 1.8411182728743316 0.0 9 1.0565958524386409E-4 0.0 0.0 1.9382194317134427 0.0 10 1.4087944699181878E-4 0.0 0.0 2.1203061169503683 0.0 11 1.4087944699181878E-4 0.0 0.0 2.450281001666956 0.0 12 1.4087944699181878E-4 0.0 0.0 2.7121054539012515 0.0 13 1.4087944699181878E-4 0.0 0.0 2.804733690298372 0.0 14 1.4087944699181878E-4 3.5219861747954695E-5 0.0 2.8448138929675446 0.0 15 1.4087944699181878E-4 3.5219861747954695E-5 0.0 2.91067503443622 0.0 16 1.4087944699181878E-4 3.5219861747954695E-5 0.0 3.0474689774652757 0.0 17 1.4087944699181878E-4 3.5219861747954695E-5 0.0 3.21391804408611 0.0 18 1.4087944699181878E-4 3.5219861747954695E-5 0.0 3.4121354260035988 0.0 19 1.4087944699181878E-4 3.5219861747954695E-5 0.0 3.5447029856229 0.0 20 1.4087944699181878E-4 3.5219861747954695E-5 0.0 3.6907245324299205 0.0 21 1.4087944699181878E-4 3.5219861747954695E-5 0.0 3.8850325096933864 0.0 22 1.4087944699181878E-4 3.5219861747954695E-5 0.0 4.084693905942542 0.0 23 1.4087944699181878E-4 3.5219861747954695E-5 0.0 4.295167799748319 0.0 24 1.4087944699181878E-4 3.5219861747954695E-5 0.0 4.450487390056799 0.0 25 1.4087944699181878E-4 3.5219861747954695E-5 0.0 4.58978194326996 0.0 26 1.4087944699181878E-4 3.5219861747954695E-5 0.0 4.723370878879952 0.0 27 1.4087944699181878E-4 3.5219861747954695E-5 0.0 4.8593195452270574 0.0 28 1.4087944699181878E-4 3.5219861747954695E-5 0.0 5.009708354890824 0.0 29 1.4087944699181878E-4 3.5219861747954695E-5 0.0 5.180665563815396 0.0 30 1.4087944699181878E-4 3.5219861747954695E-5 0.0 5.372966008959229 0.0 31 1.4087944699181878E-4 3.5219861747954695E-5 0.0 5.569387177927572 0.0 32 1.4087944699181878E-4 3.5219861747954695E-5 0.0 5.7221709381901995 0.0 33 1.4087944699181878E-4 3.5219861747954695E-5 0.0 5.884217522092539 0.0 34 1.4087944699181878E-4 3.5219861747954695E-5 0.0 6.05623132686955 0.0 35 1.4087944699181878E-4 3.5219861747954695E-5 0.0 6.253356893072852 0.0 36 1.4087944699181878E-4 3.5219861747954695E-5 0.0 6.434316542733844 0.0 37 1.4087944699181878E-4 3.5219861747954695E-5 0.0 6.623834618799587 0.0 38 1.4087944699181878E-4 3.5219861747954695E-5 0.0 6.8256796464771154 0.0 39 1.4087944699181878E-4 3.5219861747954695E-5 0.0 7.081551942076007 0.0 40 1.4087944699181878E-4 3.5219861747954695E-5 0.0 7.284594445052965 0.0 41 1.4087944699181878E-4 3.5219861747954695E-5 0.0 7.497885927798579 0.0 42 1.4087944699181878E-4 3.5219861747954695E-5 0.0 7.709240318148055 0.0 43 1.4087944699181878E-4 3.5219861747954695E-5 0.0 7.901118124950912 0.0 44 1.4087944699181878E-4 3.5219861747954695E-5 0.0 8.112190756406404 0.0 45 1.4087944699181878E-4 3.5219861747954695E-5 0.0 8.305125159061701 0.0 46 1.4087944699181878E-4 3.5219861747954695E-5 0.0 8.51073871194626 0.0 47 1.7609930873977348E-4 3.5219861747954695E-5 0.0 8.74407029602646 0.0 48 1.7609930873977348E-4 3.5219861747954695E-5 0.0 8.961095084117357 0.0 49 1.7609930873977348E-4 3.5219861747954695E-5 0.0 9.208796371790722 0.0 50 1.7609930873977348E-4 3.5219861747954695E-5 0.0 9.45216561646909 0.0 51 1.7609930873977348E-4 3.5219861747954695E-5 0.0 9.68634247723124 0.0 52 1.7609930873977348E-4 3.5219861747954695E-5 0.0 9.95721843393476 0.0 53 1.7609930873977348E-4 3.5219861747954695E-5 0.0 10.20224301211528 0.0 54 1.7609930873977348E-4 3.5219861747954695E-5 0.0 10.475337820108921 0.0 55 2.1131917048772817E-4 3.5219861747954695E-5 0.0 10.724835320731431 0.0 56 2.1131917048772817E-4 3.5219861747954695E-5 0.0 10.986694992827475 0.0 57 2.1131917048772817E-4 3.5219861747954695E-5 0.0 11.243236465799578 0.0 58 2.4653903223568287E-4 3.5219861747954695E-5 0.0 11.483259823611888 0.0 59 2.4653903223568287E-4 3.5219861747954695E-5 0.0 11.746739609348337 0.0 60 2.4653903223568287E-4 3.5219861747954695E-5 0.0 12.007683565038933 0.0 61 2.4653903223568287E-4 3.5219861747954695E-5 0.0 12.282328046949484 0.0 62 2.4653903223568287E-4 3.5219861747954695E-5 0.0 12.578632743835028 0.0 63 2.4653903223568287E-4 3.5219861747954695E-5 0.0 12.918997487767262 0.0 64 2.4653903223568287E-4 3.5219861747954695E-5 0.0 13.233158654559018 0.0 65 2.4653903223568287E-4 3.5219861747954695E-5 0.0 13.51294523628477 0.0 66 2.4653903223568287E-4 3.5219861747954695E-5 0.0 13.778679093173087 0.0 67 2.4653903223568287E-4 3.5219861747954695E-5 0.0 14.056070724299978 0.0 68 2.4653903223568287E-4 3.5219861747954695E-5 0.0 14.370795408879703 0.0 69 2.8175889398363756E-4 3.5219861747954695E-5 0.0 14.764764782392323 0.0 70 3.1697875573159226E-4 3.5219861747954695E-5 0.0 15.049763903656773 0.0 71 3.5219861747954695E-4 3.5219861747954695E-5 0.0 15.33236807432236 0.0 72 3.8741847922750165E-4 3.5219861747954695E-5 0.0 15.624869026139125 0.0 73 4.2263834097545634E-4 3.5219861747954695E-5 0.0 15.917581297126377 0.0 74 4.5785820272341104E-4 3.5219861747954695E-5 0.0 16.248049259907436 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGG 405 0.0 78.02469 2 CCGGATA 65 0.0 73.84615 80 TACGGGA 1415 0.0 72.65018 4 CGTTTTT 7715 0.0 71.75632 1 GGCGATA 445 0.0 71.01124 8 TCGCGCG 35 1.18210664E-7 68.57143 1 AGGGATT 5455 0.0 67.68103 6 ATTAGCG 265 0.0 66.4151 1 ACGGGAT 2235 0.0 64.96644 5 CGATAGG 680 0.0 63.52941 2 TTAGCGG 790 0.0 63.291138 2 CGAGGGA 1265 0.0 63.241108 4 ATAGGGA 3980 0.0 62.914574 4 TAGAGGG 4330 0.0 62.817554 3 GCGATAA 160 0.0 62.5 9 TTGCGGG 1675 0.0 62.328358 3 TAGCGGG 1740 0.0 62.298843 3 AAGTACT 7630 0.0 62.280468 80 GGGCGAT 1555 0.0 62.25081 7 GCGATAT 110 0.0 61.81818 9 >>END_MODULE