##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547787_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3400057 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.65500313671212 31.0 31.0 33.0 30.0 34.0 2 32.0760722540828 33.0 31.0 34.0 30.0 34.0 3 32.241990943093015 33.0 31.0 34.0 30.0 34.0 4 35.86000911161195 37.0 35.0 37.0 35.0 37.0 5 35.785456832047224 37.0 35.0 37.0 35.0 37.0 6 35.842174410605466 37.0 35.0 37.0 35.0 37.0 7 36.13984324380444 37.0 35.0 37.0 35.0 37.0 8 36.07909014466522 37.0 35.0 37.0 35.0 37.0 9 37.916182581644954 39.0 38.0 39.0 35.0 39.0 10-11 37.376562069400606 39.0 37.0 39.0 34.5 39.0 12-13 36.51032688569633 39.0 35.0 39.0 33.0 39.0 14-15 37.48566685793797 40.0 35.0 41.0 33.0 41.0 16-17 37.67151138936788 40.0 35.0 41.0 33.0 41.0 18-19 37.59642323643398 39.0 35.5 41.0 33.0 41.0 20-21 37.409276373896084 39.0 35.0 41.0 33.0 41.0 22-23 37.192409421371465 39.0 35.0 41.0 32.5 41.0 24-25 37.098092031986525 39.0 35.0 41.0 32.0 41.0 26-27 37.06882046389222 39.0 35.0 41.0 32.0 41.0 28-29 37.05504040079328 39.0 35.0 41.0 32.0 41.0 30-31 36.919295764747474 39.0 35.0 41.0 32.0 41.0 32-33 36.64598196442001 39.0 35.0 41.0 31.0 41.0 34-35 36.40255722183481 38.0 35.0 41.0 30.5 41.0 36-37 36.245952494325834 38.0 35.0 41.0 30.0 41.0 38-39 36.16197272575137 38.0 35.0 41.0 30.0 41.0 40-41 35.980102392401065 38.0 35.0 41.0 30.0 41.0 42-43 35.9497886358964 38.0 35.0 41.0 30.0 41.0 44-45 35.842949250556686 38.0 35.0 40.5 30.0 41.0 46-47 35.74250490506483 38.0 35.0 40.0 29.0 41.0 48-49 35.66806174131787 38.0 35.0 40.0 29.0 41.0 50-51 35.48861357324304 37.0 35.0 40.0 29.0 41.0 52-53 35.29505564171424 37.0 34.0 40.0 28.0 41.0 54-55 35.08223273903938 36.5 34.0 40.0 28.0 41.0 56-57 34.767281107346136 36.0 34.0 40.0 26.5 41.0 58-59 34.39547381117434 36.0 34.0 39.5 26.0 41.0 60-61 34.037528782605705 35.0 33.5 39.0 25.5 41.0 62-63 33.554893638547824 35.0 33.0 39.0 23.5 40.5 64-65 33.15275596850288 35.0 32.5 38.0 22.5 40.0 66-67 32.80593987100805 35.0 32.5 37.5 21.0 40.0 68-69 32.326583789624706 35.0 32.0 37.0 19.5 39.5 70-71 32.005024768702405 35.0 32.0 36.5 18.5 39.0 72-73 31.710664556505964 35.0 31.5 36.0 18.0 39.0 74-75 31.384921193968218 35.0 31.0 35.5 17.5 38.0 76-77 29.369270279880602 32.5 28.0 34.5 12.5 36.0 78-79 30.380011276281543 34.0 30.0 35.0 13.0 36.5 80-81 30.593948424982287 34.0 31.0 35.0 12.5 36.0 82-83 30.404348515333716 34.0 31.0 35.0 11.0 36.0 84-85 30.167436604739272 34.0 30.0 35.0 10.0 36.0 86 29.76243045337181 34.0 29.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 20.0 10 26.0 11 34.0 12 53.0 13 173.0 14 503.0 15 1566.0 16 3699.0 17 7541.0 18 14369.0 19 21403.0 20 26249.0 21 27664.0 22 26658.0 23 27277.0 24 30713.0 25 36579.0 26 44258.0 27 54090.0 28 65544.0 29 80915.0 30 99003.0 31 117230.0 32 137752.0 33 172215.0 34 396349.0 35 353409.0 36 276064.0 37 464831.0 38 613731.0 39 299122.0 40 1011.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.18076726360764 23.44919511643481 29.994350094719003 13.375687525238547 2 29.419918548424334 25.7340097533659 31.371297598834374 13.474774099375392 3 28.015147981342665 25.45224977110678 32.16775483469836 14.364847412852196 4 26.757022014630934 26.544613810886116 30.911040609025086 15.787323565457873 5 22.882086976777156 31.90067107698489 29.59738616146729 15.619855784770667 6 22.58288611043874 38.45338475207916 27.566067274754513 11.397661862727595 7 85.95520604507513 4.316251168730407 7.20908502416283 2.5194577620316365 8 85.6377996015949 3.8042597521159203 7.474286460491691 3.0836541857974735 9 80.49717990021932 6.588860127933149 9.14405258500078 3.76990738684675 10-11 39.55293984777314 27.41752564736415 20.53127344629811 12.498261058564607 12-13 29.999158837631253 26.00959336858176 27.28001324683674 16.711234546950244 14-15 15.653928742959309 32.35088411753097 34.61418440926137 17.381002730248348 16-17 19.990797213105544 26.17726702817041 32.85053750569476 20.981398253029287 18-19 23.19368469410954 28.308275420088545 29.624062184839843 18.873977700962072 20-21 25.76646509161464 28.25627629183864 28.553256607168642 17.42400200937808 22-23 21.053249989632526 25.508881174639132 30.045349239733333 23.392519595995008 24-25 20.006649888516577 26.803124182918108 33.48871798325734 19.701507945307974 26-27 17.572705398762434 33.20639918683716 29.066159773203804 20.154735641196602 28-29 16.092553742481375 28.140204708332835 35.258320669329954 20.50892087985584 30-31 21.377435731224505 28.223173905613937 30.617869053371756 19.781521309789806 32-33 24.36326802756542 27.16114759252565 29.070968516116054 19.40461586379287 34-35 18.271605446614572 27.118868889550967 31.443369919974874 23.166155743859587 36-37 21.61087299418804 28.70747460998448 30.102862981414724 19.57878941441276 38-39 19.023710484853638 30.70714696841847 29.14993778045486 21.119204766273036 40-41 20.075678143042897 26.144458754662054 29.48031459472591 24.29954850756914 42-43 20.378805414144527 25.428897221428937 28.438758526695292 25.75353883773125 44-45 18.747744523106526 30.036143511711717 28.40937666633236 22.8067352988494 46-47 19.861269972826925 28.935103146800184 28.871501271890445 22.332125608482446 48-49 20.04060520161868 25.105461467263634 32.67329047718906 22.180642853928624 50-51 18.467263931163508 29.00076381072435 29.726236942498318 22.805735315613827 52-53 21.03591204500395 24.885494566708736 31.391694315712943 22.68689907257437 54-55 20.639698099178926 26.1235620461657 32.02400724458443 21.21273261007095 56-57 21.60010846876979 25.02312461232268 29.89898404644393 23.47778287246361 58-59 22.913557037426138 27.502333049122413 28.60490280015894 20.97920711329251 60-61 22.765324228387936 29.557725061668084 27.080428357524593 20.596522352419385 62-63 21.584858724427267 27.008753088551163 30.74635219350734 20.660035993514224 64-65 18.448984825842626 30.96240739493485 30.43271039279636 20.15589738642617 66-67 18.18676863358467 29.507431787172976 26.366131508971762 25.93966807027059 68-69 17.43626650964969 31.811407867573987 26.245383533276062 24.506942089500264 70-71 17.762628685342627 30.42512228471464 29.63756195852011 22.17468707142263 72-73 20.698211824095893 30.747249237292195 27.597919681934748 20.95661925667717 74-75 19.951739044374843 31.947023241080956 25.84209617662292 22.259141537921277 76-77 23.71430831894877 28.241055958767753 27.144280228243233 20.900355494040245 78-79 17.793951689633438 28.97467601278449 30.529282303208443 22.702089994373623 80-81 16.202243080042482 28.763458965540874 30.647500909543574 24.38679704487307 82-83 17.4157668533204 28.162145516972213 30.787910320326983 23.6341773093804 84-85 16.14884691638993 27.628904456601756 29.27984736726473 26.942401259743587 86 17.466765998334736 27.07645783585393 31.028597461748436 24.4281787040629 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3509.0 1 3709.5 2 7675.0 3 7475.5 4 4130.0 5 5481.5 6 6643.5 7 7073.0 8 7048.0 9 7155.0 10 6977.0 11 6405.5 12 6278.5 13 6454.0 14 6495.0 15 6403.5 16 6503.5 17 6994.0 18 7768.0 19 8401.5 20 9197.5 21 9835.0 22 9745.0 23 10821.0 24 13333.5 25 15315.5 26 17414.5 27 23734.5 28 34562.0 29 40533.0 30 42696.0 31 49607.0 32 56560.0 33 63182.5 34 71472.0 35 79681.0 36 84018.0 37 87636.5 38 101383.5 39 116738.0 40 133754.0 41 157291.5 42 179169.0 43 189299.0 44 194623.5 45 197733.0 46 204852.5 47 213084.0 48 202634.0 49 175974.0 50 158661.0 51 139027.0 52 112546.0 53 98219.5 54 89777.0 55 85512.5 56 75360.5 57 68510.0 58 61449.0 59 44293.5 60 30375.5 61 24160.0 62 19525.0 63 15463.5 64 13645.0 65 10583.5 66 6315.0 67 4183.0 68 2880.0 69 2046.5 70 1186.5 71 782.0 72 725.5 73 436.5 74 159.5 75 91.0 76 61.5 77 78.0 78 67.0 79 34.0 80 26.5 81 14.5 82 12.5 83 9.0 84 3.0 85 2.5 86 2.0 87 2.5 88 3.0 89 2.5 90 2.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 3400057.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.311455289000111 #Duplication Level Percentage of deduplicated Percentage of total 1 75.76602816153178 11.60088152620417 2 10.743328480864443 3.2899198737959474 3 3.9089522442017475 1.7955524254179511 4 2.0103809686504546 1.2312743326139266 5 1.1545382699075946 0.8838830549564839 6 0.7505519444112317 0.6895225523354803 7 0.5302567479819627 0.5683301741891494 8 0.40829985946351105 0.5001332034144462 9 0.3085999395478429 0.42526027589174403 >10 2.223622748466311 6.939454873742537 >50 0.548354198672901 6.1885765968465725 >100 1.590250224434247 59.082577424920935 >500 0.051404764998246866 4.652009621373489 >1k 0.005043486377186485 1.4661105615905188 >5k 1.9398024527640326E-4 0.17202934185673763 >10k+ 1.9398024527640326E-4 0.5144841608498635 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17322 0.5094620472539136 No Hit CTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 5792 0.17035008530739337 TruSeq Adapter, Index 10 (95% over 24bp) GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4761 0.1400270642521581 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4409 0.12967429663679167 No Hit CCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 4246 0.12488025936035778 RNA PCR Primer, Index 10 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 3759 0.11055697007432523 RNA PCR Primer, Index 35 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18208518268958432 0.0 2 0.0 0.0 0.0 0.5773726734581215 0.0 3 0.0 0.0 0.0 0.8048688595514722 0.0 4 0.0 0.0 0.0 1.1780390740508173 0.0 5 0.0 0.0 0.0 1.9318205547730523 0.0 6 0.0 0.0 0.0 2.5079285435508876 0.0 7 0.0 0.0 0.0 2.8629225921800723 0.0 8 0.0 0.0 0.0 3.5439994094216654 0.0 9 0.0 0.0 0.0 3.722231715527122 0.0 10 0.0 0.0 0.0 4.09013731240388 0.0 11 0.0 0.0 0.0 4.654951372874043 0.0 12 0.0 0.0 0.0 5.108443770207382 0.0 13 0.0 0.0 0.0 5.26967636130806 0.0 14 0.0 0.0 0.0 5.34082222739207 0.0 15 0.0 0.0 0.0 5.455379130408696 0.0 16 0.0 0.0 0.0 5.695345695675102 0.0 17 0.0 0.0 0.0 5.976664508859704 0.0 18 0.0 0.0 0.0 6.326452762409572 0.0 19 2.9411271634563773E-5 0.0 0.0 6.54503733319765 0.0 20 2.9411271634563773E-5 0.0 0.0 6.776356984603494 0.0 21 2.9411271634563773E-5 0.0 0.0 7.075234326953931 0.0 22 2.9411271634563773E-5 0.0 0.0 7.3637589016890015 0.0 23 2.9411271634563773E-5 0.0 0.0 7.673489003272592 0.0 24 2.9411271634563773E-5 0.0 0.0 7.900573431563059 0.0 25 2.9411271634563773E-5 0.0 0.0 8.094834880709353 0.0 26 2.9411271634563773E-5 0.0 0.0 8.289743377831607 0.0 27 2.9411271634563773E-5 0.0 0.0 8.491739991417791 0.0 28 5.882254326912755E-5 0.0 0.0 8.697030667427047 0.0 29 5.882254326912755E-5 0.0 0.0 8.943967704070843 0.0 30 5.882254326912755E-5 0.0 0.0 9.213051428255467 0.0 31 8.823381490369133E-5 0.0 0.0 9.45963552963965 0.0 32 8.823381490369133E-5 0.0 0.0 9.677102472105615 0.0 33 8.823381490369133E-5 0.0 0.0 9.896216445783114 0.0 34 8.823381490369133E-5 0.0 0.0 10.120095045465414 0.0 35 8.823381490369133E-5 0.0 0.0 10.37797307515727 0.0 36 8.823381490369133E-5 0.0 0.0 10.611351515577534 0.0 37 8.823381490369133E-5 0.0 0.0 10.847759316976157 0.0 38 8.823381490369133E-5 0.0 0.0 11.091814048999767 0.0 39 8.823381490369133E-5 0.0 0.0 11.424220241013607 0.0 40 1.176450865382551E-4 0.0 0.0 11.679627723888158 0.0 41 1.176450865382551E-4 0.0 0.0 11.951711397779508 0.0 42 1.176450865382551E-4 0.0 0.0 12.227942060971332 0.0 43 1.176450865382551E-4 0.0 0.0 12.47173209155023 0.0 44 1.4705635817281886E-4 0.0 0.0 12.712492761150768 0.0 45 1.4705635817281886E-4 0.0 0.0 12.956547493174378 0.0 46 1.4705635817281886E-4 0.0 0.0 13.225248870827754 0.0 47 1.4705635817281886E-4 0.0 0.0 13.502332460896978 0.0 48 1.4705635817281886E-4 0.0 0.0 13.76715155069459 0.0 49 1.4705635817281886E-4 0.0 0.0 14.038735232968154 0.0 50 1.4705635817281886E-4 0.0 0.0 14.325465720133515 0.0 51 1.4705635817281886E-4 0.0 0.0 14.600049352113803 0.0 52 1.7646762980738265E-4 0.0 0.0 14.914397023344021 0.0 53 1.7646762980738265E-4 0.0 0.0 15.190451218906036 0.0 54 1.7646762980738265E-4 0.0 0.0 15.487857997674745 0.0 55 1.7646762980738265E-4 0.0 0.0 15.776706096397795 0.0 56 1.7646762980738265E-4 0.0 0.0 16.06576007402229 0.0 57 2.0587890144194642E-4 0.0 0.0 16.365343286891957 0.0 58 2.0587890144194642E-4 0.0 0.0 16.630221199232835 0.0 59 2.0587890144194642E-4 0.0 0.0 16.907863603463117 0.0 60 2.0587890144194642E-4 0.0 0.0 17.21385847354912 0.0 61 2.0587890144194642E-4 0.0 0.0 17.516265168495703 0.0 62 2.0587890144194642E-4 0.0 0.0 17.85605358968982 0.0 63 2.352901730765102E-4 0.0 0.0 18.219459262006488 0.0 64 2.352901730765102E-4 0.0 0.0 18.54027741299631 0.0 65 2.941127163456377E-4 0.0 0.0 18.854389794053453 0.0 66 2.941127163456377E-4 0.0 0.0 19.138532089314975 0.0 67 2.941127163456377E-4 0.0 0.0 19.43670356114618 0.0 68 3.529352596147653E-4 0.0 0.0 19.79152114214556 0.0 69 3.823465312493291E-4 0.0 0.0 20.229337331697675 0.0 70 4.1175780288389284E-4 0.0 0.0 20.537067466810115 0.0 71 4.411690745184566E-4 0.0 0.0 20.83762125164372 0.0 72 4.411690745184566E-4 0.0 0.0 21.142410259592708 0.0 73 4.411690745184566E-4 0.0 0.0 21.445316946157078 0.0 74 4.705803461530204E-4 0.0 0.0 21.791105266764646 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGG 120 0.0 73.33333 2 CGTTTTT 8925 0.0 70.36414 1 TATAGCG 250 0.0 68.8 1 TACGGGA 1375 0.0 68.36364 4 TAAGGGA 4550 0.0 67.07692 4 TAACGGG 1235 0.0 66.072876 3 CGGGATA 1030 0.0 66.019424 6 GCGAACG 135 0.0 65.18519 1 ACGGGAC 1185 0.0 65.14768 5 TAGGGAG 3965 0.0 64.161415 5 AGTAGGG 6095 0.0 64.118126 3 ACGGGTA 425 0.0 64.0 5 TATGGGA 3660 0.0 62.295086 4 CTAGACG 110 0.0 61.81818 1 CTACGGG 440 0.0 61.81818 3 GTAGGGA 5765 0.0 61.543797 4 AGGGATT 5415 0.0 61.532776 6 ATAGCGG 600 0.0 61.333332 2 CGGGACT 1495 0.0 61.270905 6 ACGGGAT 1595 0.0 61.19122 5 >>END_MODULE