Basic Statistics
Measure | Value |
---|---|
Filename | SRR1547778_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 3799186 |
Sequences flagged as poor quality | 0 |
Sequence length | 86 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18710 | 0.49247391414897823 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 6012 | 0.15824442393712757 | No Hit |
GTCTAAGGGTCATTTGCTCTGTGGCATTTCTTTGTTTGTTTGTTTTTTTC | 5813 | 0.1530064598048108 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGAC | 140 | 0.0 | 74.285706 | 9 |
CGTTTTT | 11110 | 0.0 | 69.0189 | 1 |
ATACGCG | 140 | 0.0 | 68.57143 | 1 |
AATCGCG | 100 | 0.0 | 68.0 | 1 |
TACGCGG | 290 | 0.0 | 67.586205 | 2 |
ACGGGTA | 610 | 0.0 | 66.22951 | 5 |
ATTAGCG | 405 | 0.0 | 66.172844 | 1 |
CGAGGGT | 770 | 0.0 | 65.454544 | 4 |
TACGGGA | 1365 | 0.0 | 65.347984 | 4 |
CCGATCC | 2325 | 0.0 | 64.68817 | 80 |
CGTAAGG | 940 | 0.0 | 64.68085 | 2 |
TAATGCG | 200 | 0.0 | 64.0 | 1 |
ACGAGGG | 2240 | 0.0 | 63.928566 | 3 |
CGAGGGA | 2190 | 0.0 | 63.196346 | 4 |
CGCGGGT | 625 | 0.0 | 61.44 | 4 |
GTACGGG | 1695 | 0.0 | 60.648964 | 3 |
TATTGCG | 310 | 0.0 | 60.645157 | 1 |
GCGAGGG | 3210 | 0.0 | 60.56075 | 3 |
AATGCGG | 925 | 0.0 | 60.54054 | 2 |
CGGGATC | 1130 | 0.0 | 60.53097 | 6 |