##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547778_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3799186 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.78450857631082 31.0 31.0 33.0 30.0 34.0 2 32.22787091761235 33.0 31.0 34.0 31.0 34.0 3 32.39490669843487 34.0 31.0 34.0 31.0 34.0 4 35.98729280430071 37.0 35.0 37.0 35.0 37.0 5 35.93680251506507 37.0 35.0 37.0 35.0 37.0 6 35.99090384098067 37.0 35.0 37.0 35.0 37.0 7 36.25955454668448 37.0 35.0 37.0 35.0 37.0 8 36.224149330935624 37.0 36.0 37.0 35.0 37.0 9 38.11457112128756 39.0 39.0 39.0 37.0 39.0 10-11 37.52453907231707 39.0 37.0 39.0 35.0 39.0 12-13 36.76241331695789 39.0 35.0 39.0 33.0 39.0 14-15 37.764869237778825 40.0 35.0 41.0 33.0 41.0 16-17 37.94885259631932 40.0 35.0 41.0 33.5 41.0 18-19 37.87646774861773 40.0 36.0 41.0 33.5 41.0 20-21 37.70257563067457 40.0 35.0 41.0 33.5 41.0 22-23 37.52606782084373 39.0 35.0 41.0 33.0 41.0 24-25 37.46521399584016 39.0 35.0 41.0 33.0 41.0 26-27 37.45694419804663 39.0 35.0 41.0 33.0 41.0 28-29 37.466399776162575 39.0 35.0 41.0 33.0 41.0 30-31 37.316078101993426 39.0 35.0 41.0 33.0 41.0 32-33 37.061199951779145 39.0 35.0 41.0 32.5 41.0 34-35 36.813620207065405 39.0 35.0 41.0 31.5 41.0 36-37 36.62415093654272 39.0 35.0 41.0 31.0 41.0 38-39 36.53757502264959 39.0 35.0 41.0 31.0 41.0 40-41 36.39045192838677 39.0 35.0 41.0 31.0 41.0 42-43 36.349288242270845 39.0 35.0 41.0 31.0 41.0 44-45 36.247733330244955 38.0 35.0 41.0 30.0 41.0 46-47 36.180843212203875 38.0 35.0 41.0 30.0 41.0 48-49 36.079823414805176 38.0 35.0 40.5 30.0 41.0 50-51 35.92722585838125 38.0 35.0 40.0 30.0 41.0 52-53 35.74702515222998 37.5 35.0 40.0 30.0 41.0 54-55 35.557442041532056 37.0 35.0 40.0 29.0 41.0 56-57 35.2573420990707 37.0 34.5 40.0 28.5 41.0 58-59 34.97741753101849 36.0 34.0 40.0 28.0 41.0 60-61 34.68569556741892 36.0 34.0 39.0 27.5 41.0 62-63 34.300667169230465 35.0 33.5 39.0 26.5 41.0 64-65 34.02009614691147 35.0 33.5 39.0 26.0 40.0 66-67 33.73246611247778 35.0 33.5 38.0 26.0 40.0 68-69 33.30628771531586 35.0 33.0 37.0 25.5 40.0 70-71 33.04306106623892 35.0 33.0 37.0 25.0 39.0 72-73 32.771529348655214 35.0 33.0 36.0 25.0 39.0 74-75 32.4732125513202 35.0 33.0 36.0 24.5 38.5 76-77 30.432941688035278 33.0 30.0 34.5 20.0 36.0 78-79 31.54546855563271 34.0 31.5 35.0 22.0 37.0 80-81 31.789126670818433 35.0 32.0 35.0 23.0 36.5 82-83 31.640776471591547 35.0 32.0 35.0 21.0 36.0 84-85 31.438507353943713 35.0 32.0 35.0 20.0 36.0 86 31.03735984497732 34.0 31.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 4.0 9 6.0 10 9.0 11 24.0 12 60.0 13 159.0 14 521.0 15 1379.0 16 3525.0 17 7596.0 18 15085.0 19 22123.0 20 26757.0 21 27692.0 22 25402.0 23 23463.0 24 25167.0 25 29039.0 26 34513.0 27 42450.0 28 52539.0 29 65647.0 30 82551.0 31 103128.0 32 129878.0 33 175992.0 34 424975.0 35 394328.0 36 329639.0 37 571909.0 38 805202.0 39 377089.0 40 1333.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.05960434682587 24.18223272037747 31.257195620324985 12.500967312471673 2 29.526008992452596 25.72935360364036 31.86529956680194 12.879337837105107 3 28.41061216797493 24.847217272331495 33.22480131270225 13.51736924699133 4 26.373544227631918 26.955984782003302 32.53225822584101 14.13821276452377 5 24.480875640202928 31.843952888855664 30.19691586566175 13.478255605279656 6 22.503504698111648 40.53294574153516 26.403234798190983 10.56031476216221 7 90.1581812525104 3.0820286240263046 5.391444377821986 1.3683457456413033 8 90.98246308551357 2.7320325985619025 5.028313959885091 1.2571903560394253 9 86.47104932477642 4.587509008508665 6.849809406541296 2.091632260173627 10-11 39.12365701495005 25.517531913415137 21.624474295283253 13.734336776351567 12-13 30.88161516703841 26.369872388453736 25.571372393981235 17.177140050526614 14-15 18.079451756244627 31.40647759809601 33.5189564290877 16.995114216571654 16-17 22.722670066693233 25.263464331569974 31.870892870209566 20.142972731527227 18-19 25.20284608334522 27.79891534660319 28.876909422176222 18.12132914787536 20-21 26.48789767071157 28.10295415912777 28.898387707261502 16.510760462899157 22-23 22.253003669733467 24.048835724284096 31.381906545244163 22.316254060738274 24-25 19.846303918786816 27.655016100817388 33.908250346258384 18.59042963413742 26-27 18.466534673480055 34.17026699929933 28.518845879090943 18.84435244812968 28-29 16.9297975934845 29.310239088057283 34.541965041985314 19.21799827647291 30-31 22.432384200194463 28.86197201189939 30.35552878958809 18.35011499831806 32-33 25.435711755097014 28.81568578111206 27.7542873657673 17.99431509802363 34-35 19.95740666553309 29.284996838796523 30.0467652807733 20.710831214897084 36-37 23.003480219183796 29.430330602397458 29.634519078560512 17.93167009985823 38-39 20.668993305408055 31.04992753710927 27.784635972021377 20.496443185461306 40-41 21.572844814652402 26.85416033855673 29.176855252677807 22.396139594113055 42-43 21.432933265178384 26.526432241011626 28.973259008640273 23.067375485169716 44-45 20.017248431637725 31.130418463323462 27.9876399839334 20.864693121105415 46-47 21.36272085652032 30.173358187780224 27.89505436164484 20.568866594054622 48-49 21.955281999881027 27.589094084890814 30.481476821613896 19.974147093614263 50-51 19.243845918573083 31.23453287098868 28.516700682725194 21.004920527713043 52-53 22.415959629246895 26.884298373388404 29.73610662915688 20.96363536820782 54-55 22.12952985192091 27.673085761002486 30.010994460392304 20.186389926684296 56-57 22.609724820000913 25.848655475146522 29.42867235244602 22.112947352406543 58-59 23.35622683385336 27.597753834637206 28.45200261319135 20.59401671831808 60-61 23.921887478001867 28.95080683072637 27.011549316090345 20.11575637518142 62-63 22.802476635784615 26.635258184253154 30.091274815184093 20.47099036477814 64-65 20.46190947218694 30.13686352813471 29.809056466306206 19.59217053337215 66-67 19.69357383397391 29.047498595751826 26.368898495625114 24.89002907464915 68-69 19.303542916824814 31.573816075338247 25.94887431149725 23.17376669633969 70-71 19.98121439697872 29.795329841708195 28.744696890333877 21.478758870979203 72-73 22.727697459403146 29.802844609345264 27.435627000099494 20.033830931152092 74-75 21.45846505014495 31.525384648185163 25.58898142917983 21.427168872490054 76-77 24.916060966743927 28.622183804636048 26.4086306908901 20.053124537729925 78-79 19.644944996112326 29.828850180012246 29.71515477262761 20.811050051247822 80-81 17.935341939036416 28.740564426169186 30.638326209877594 22.68576742491681 82-83 19.65692124576159 28.146700372132344 30.84867390014598 21.347704481960083 84-85 17.942053903125565 27.465672909933865 29.696137541041683 24.896135645898884 86 19.316901041433614 27.364861841457618 30.6881526727041 22.63008444440467 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2707.0 1 2970.5 2 7230.5 3 7455.0 4 3997.0 5 5230.5 6 6535.5 7 6921.0 8 7085.5 9 7359.5 10 7479.5 11 7352.0 12 7235.5 13 7315.5 14 7374.0 15 7583.5 16 7732.5 17 8180.5 18 9409.5 19 10260.0 20 10527.5 21 10665.0 22 10991.0 23 13040.0 24 15876.5 25 18944.5 26 22163.5 27 28293.0 28 37119.0 29 41080.0 30 47357.0 31 56584.5 32 64126.5 33 71771.5 34 81776.5 35 90741.0 36 92754.0 37 98308.5 38 105493.5 39 118571.5 40 143128.0 41 171899.5 42 195082.0 43 202602.0 44 208994.5 45 214576.0 46 214186.0 47 224487.5 48 226027.5 49 202749.5 50 187812.0 51 161899.0 52 132087.5 53 120833.0 54 108511.5 55 99312.5 56 88138.0 57 81197.0 58 73738.0 59 56292.0 60 41798.5 61 32417.5 62 22931.0 63 14958.0 64 11597.0 65 10105.5 66 7212.5 67 4705.5 68 3160.0 69 2607.0 70 1853.5 71 1213.0 72 891.5 73 400.5 74 245.0 75 191.5 76 96.0 77 55.5 78 42.0 79 41.0 80 37.0 81 24.5 82 13.5 83 9.0 84 9.5 85 8.5 86 5.0 87 4.5 88 3.0 89 2.5 90 3.0 91 2.5 92 1.0 93 0.0 94 0.5 95 0.5 96 1.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 3799186.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.096294814751293 #Duplication Level Percentage of deduplicated Percentage of total 1 78.42755866067489 11.055379884820743 2 9.808980970616917 2.7654057518820268 3 3.1036364192030512 1.3124932188865572 4 1.4129692763404083 0.7967052593392072 5 0.7762524148566793 0.5471141445241189 6 0.5266468983714113 0.4454261965630666 7 0.39590644158764354 0.3906569743774975 8 0.3048997134887007 0.3438365000215941 9 0.24177649164305992 0.30673374349291427 >10 2.2418178190922764 7.072758002806813 >50 0.787293473323869 8.127437561696556 >100 1.9314950669791424 61.95771457881657 >500 0.03642549207243188 3.2123454941419793 >1k 0.003774662390925583 0.8536280386354678 >5k 3.7746623909255833E-4 0.31459675736659 >10k+ 1.8873311954627916E-4 0.4977678926282367 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18710 0.49247391414897823 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 6012 0.15824442393712757 No Hit GTCTAAGGGTCATTTGCTCTGTGGCATTTCTTTGTTTGTTTGTTTTTTTC 5813 0.1530064598048108 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.264285560117352E-5 0.0 0.0 0.037455391760234956 0.0 2 5.264285560117352E-5 0.0 0.0 0.13031738904070503 0.0 3 5.264285560117352E-5 0.0 0.0 0.1939626014625238 0.0 4 5.264285560117352E-5 0.0 0.0 0.290509598635076 0.0 5 5.264285560117352E-5 0.0 0.0 0.48586723577103097 0.0 6 5.264285560117352E-5 0.0 0.0 0.6491916952736718 0.0 7 5.264285560117352E-5 0.0 0.0 0.7513714779955496 0.0 8 5.264285560117352E-5 0.0 0.0 0.984974149725757 0.0 9 5.264285560117352E-5 0.0 0.0 1.0567263619101566 0.0 10 5.264285560117352E-5 0.0 0.0 1.218234642894557 0.0 11 5.264285560117352E-5 0.0 0.0 1.5049276344985478 0.0 12 5.264285560117352E-5 0.0 0.0 1.7049968072108077 0.0 13 5.264285560117352E-5 0.0 0.0 1.774406412320955 0.0 14 5.264285560117352E-5 0.0 0.0 1.805360411414445 0.0 15 5.264285560117352E-5 0.0 0.0 1.8568188027645922 0.0 16 5.264285560117352E-5 0.0 0.0 1.9741070850440068 0.0 17 5.264285560117352E-5 0.0 0.0 2.1117681524410754 0.0 18 5.264285560117352E-5 0.0 0.0 2.27211829060225 0.0 19 5.264285560117352E-5 0.0 0.0 2.3799835017290545 0.0 20 5.264285560117352E-5 0.0 0.0 2.500588283911343 0.0 21 5.264285560117352E-5 0.0 0.0 2.6525945294597317 0.0 22 5.264285560117352E-5 0.0 0.0 2.8113917033806715 0.0 23 5.264285560117352E-5 0.0 0.0 2.976900841390761 0.0 24 5.264285560117352E-5 0.0 0.0 3.096215873610821 0.0 25 5.264285560117352E-5 0.0 0.0 3.2130566916176253 0.0 26 5.264285560117352E-5 0.0 0.0 3.3220274027120547 0.0 27 5.264285560117352E-5 0.0 0.0 3.454924291677217 0.0 28 5.264285560117352E-5 0.0 0.0 3.5841625021780983 0.0 29 5.264285560117352E-5 0.0 0.0 3.7315888192891844 0.0 30 5.264285560117352E-5 0.0 0.0 3.8963609573208577 0.0 31 5.264285560117352E-5 0.0 0.0 4.044813810116167 0.0 32 5.264285560117352E-5 0.0 0.0 4.17952687759957 0.0 33 5.264285560117352E-5 0.0 0.0 4.319004123514879 0.0 34 5.264285560117352E-5 0.0 0.0 4.472615976159103 0.0 35 5.264285560117352E-5 0.0 0.0 4.649311720984443 0.0 36 5.264285560117352E-5 0.0 0.0 4.802318180789253 0.0 37 5.264285560117352E-5 0.0 0.0 4.971880818680633 0.0 38 5.264285560117352E-5 0.0 0.0 5.161658313122864 0.0 39 5.264285560117352E-5 0.0 0.0 5.501336338889436 0.0 40 5.264285560117352E-5 0.0 0.0 5.6986944045382355 0.0 41 5.264285560117352E-5 0.0 0.0 5.897000041587856 0.0 42 5.264285560117352E-5 0.0 0.0 6.096990250016714 0.0 43 5.264285560117352E-5 0.0 0.0 6.278844994690968 0.0 44 5.264285560117352E-5 0.0 0.0 6.453750882425867 0.0 45 7.896428340176027E-5 0.0 0.0 6.634631734271499 0.0 46 1.0528571120234703E-4 0.0 0.0 6.828568014306223 0.0 47 1.0528571120234703E-4 0.0 0.0 7.038665651010506 0.0 48 1.0528571120234703E-4 0.0 0.0 7.239024359428572 0.0 49 1.0528571120234703E-4 0.0 0.0 7.455912924505407 0.0 50 1.0528571120234703E-4 0.0 0.0 7.6811190607672275 0.0 51 1.0528571120234703E-4 0.0 0.0 7.912747625412391 0.0 52 1.0528571120234703E-4 0.0 0.0 8.187964474495326 0.0 53 1.0528571120234703E-4 0.0 0.0 8.420803824819316 0.0 54 1.0528571120234703E-4 0.0 0.0 8.648931639567001 0.0 55 1.0528571120234703E-4 0.0 0.0 8.883376596986828 0.0 56 1.0528571120234703E-4 0.0 0.0 9.122401482843957 0.0 57 1.3160713900293379E-4 0.0 0.0 9.367532939950822 0.0 58 1.3160713900293379E-4 0.0 0.0 9.597240040366541 0.0 59 1.3160713900293379E-4 0.0 0.0 9.844213997419446 0.0 60 1.3160713900293379E-4 0.0 0.0 10.09555731148725 0.0 61 1.3160713900293379E-4 0.0 0.0 10.360903625144966 0.0 62 1.5792856680352054E-4 0.0 0.0 10.675471008789778 0.0 63 1.5792856680352054E-4 0.0 0.0 10.983800214045852 0.0 64 1.5792856680352054E-4 0.0 0.0 11.26770313430298 0.0 65 1.5792856680352054E-4 0.0 0.0 11.53828741209301 0.0 66 1.5792856680352054E-4 0.0 0.0 11.804476011440345 0.0 67 1.842499946041073E-4 0.0 0.0 12.073665253556946 0.0 68 1.842499946041073E-4 0.0 0.0 12.397839958348973 0.0 69 1.842499946041073E-4 0.0 0.0 12.877047872886456 0.0 70 1.842499946041073E-4 0.0 0.0 13.189772756585226 0.0 71 2.1057142240469407E-4 0.0 0.0 13.486757426459247 0.0 72 2.1057142240469407E-4 0.0 0.0 13.774161096613854 0.0 73 2.1057142240469407E-4 0.0 0.0 14.06472333810453 0.0 74 2.1057142240469407E-4 0.0 0.0 14.396978721231337 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCGAC 140 0.0 74.285706 9 CGTTTTT 11110 0.0 69.0189 1 ATACGCG 140 0.0 68.57143 1 AATCGCG 100 0.0 68.0 1 TACGCGG 290 0.0 67.586205 2 ACGGGTA 610 0.0 66.22951 5 ATTAGCG 405 0.0 66.172844 1 CGAGGGT 770 0.0 65.454544 4 TACGGGA 1365 0.0 65.347984 4 CCGATCC 2325 0.0 64.68817 80 CGTAAGG 940 0.0 64.68085 2 TAATGCG 200 0.0 64.0 1 ACGAGGG 2240 0.0 63.928566 3 CGAGGGA 2190 0.0 63.196346 4 CGCGGGT 625 0.0 61.44 4 GTACGGG 1695 0.0 60.648964 3 TATTGCG 310 0.0 60.645157 1 GCGAGGG 3210 0.0 60.56075 3 AATGCGG 925 0.0 60.54054 2 CGGGATC 1130 0.0 60.53097 6 >>END_MODULE