##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547771_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2089992 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.813517468009447 31.0 31.0 33.0 30.0 34.0 2 32.254914851348715 33.0 31.0 34.0 31.0 34.0 3 32.400953687861005 34.0 31.0 34.0 31.0 34.0 4 36.00196507929217 37.0 35.0 37.0 35.0 37.0 5 35.962291721690804 37.0 35.0 37.0 35.0 37.0 6 36.0247924393969 37.0 35.0 37.0 35.0 37.0 7 36.25170670509743 37.0 35.0 37.0 35.0 37.0 8 36.19580170641802 37.0 36.0 37.0 35.0 37.0 9 38.06803662406363 39.0 39.0 39.0 37.0 39.0 10-11 37.576075410814965 39.0 37.5 39.0 35.0 39.0 12-13 36.815805036574304 39.0 35.0 39.0 33.0 39.0 14-15 37.83861517173271 40.0 35.0 41.0 33.0 41.0 16-17 37.99300762873733 40.0 35.0 41.0 33.5 41.0 18-19 37.889644314428 40.0 36.0 41.0 33.5 41.0 20-21 37.72265539772401 40.0 35.0 41.0 33.5 41.0 22-23 37.54627529674755 39.0 35.0 41.0 33.0 41.0 24-25 37.44265719677396 39.0 35.0 41.0 33.0 41.0 26-27 37.43695884960326 39.0 35.0 41.0 33.0 41.0 28-29 37.43017533081466 39.0 35.0 41.0 33.0 41.0 30-31 37.258600032918785 39.0 35.0 41.0 33.0 41.0 32-33 36.9929815520825 39.0 35.0 41.0 32.5 41.0 34-35 36.71980873611 39.0 35.0 41.0 31.0 41.0 36-37 36.53524128322022 39.0 35.0 41.0 31.0 41.0 38-39 36.42279587673063 39.0 35.0 41.0 31.0 41.0 40-41 36.27546397306784 38.5 35.0 41.0 30.0 41.0 42-43 36.23828033791517 38.0 35.0 41.0 30.0 41.0 44-45 36.11756982801848 38.0 35.0 41.0 30.0 41.0 46-47 36.03245227732929 38.0 35.0 41.0 30.0 41.0 48-49 35.914146322091185 38.0 35.0 40.0 30.0 41.0 50-51 35.72246448790234 37.5 35.0 40.0 29.5 41.0 52-53 35.55634854104704 37.0 35.0 40.0 29.0 41.0 54-55 35.33124409088647 37.0 34.5 40.0 29.0 41.0 56-57 35.01121009075633 36.0 34.0 40.0 28.0 41.0 58-59 34.72094055862415 36.0 34.0 39.5 27.0 41.0 60-61 34.41669944191174 35.5 34.0 39.0 26.5 41.0 62-63 34.023379754563656 35.0 33.5 39.0 26.0 40.5 64-65 33.72149821626111 35.0 33.0 38.0 26.0 40.0 66-67 33.43124471289842 35.0 33.0 37.5 25.5 40.0 68-69 33.041781738877475 35.0 33.0 37.0 24.5 39.5 70-71 32.81069138063687 35.0 33.0 36.5 24.0 39.0 72-73 32.56424354734372 35.0 33.0 36.0 24.0 39.0 74-75 32.28628937335645 35.0 32.5 35.5 23.5 38.0 76-77 30.248207648641717 33.0 29.5 34.5 19.5 36.0 78-79 31.37934307882518 34.0 31.5 35.0 20.0 37.0 80-81 31.596973576932353 35.0 32.0 35.0 20.0 36.0 82-83 31.458230222890805 35.0 32.0 35.0 20.0 36.0 84-85 31.26386201478283 34.5 32.0 35.0 19.5 36.0 86 30.86439756707203 34.0 31.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 8.0 10 9.0 11 23.0 12 25.0 13 107.0 14 277.0 15 874.0 16 1992.0 17 4329.0 18 8644.0 19 12950.0 20 15461.0 21 16085.0 22 15032.0 23 14022.0 24 14533.0 25 16255.0 26 19417.0 27 23869.0 28 29657.0 29 37100.0 30 46457.0 31 57838.0 32 73571.0 33 99947.0 34 239106.0 35 218336.0 36 191696.0 37 323075.0 38 417254.0 39 191254.0 40 780.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.85300039425988 24.25511676599719 28.401448426596847 13.49043441314608 2 32.14773070901707 24.840525705361554 29.416715470681225 13.595028114940153 3 30.135426355698968 24.76363545889171 32.32289884363194 12.778039341777383 4 27.192113654023558 26.869720075483546 30.412604450160575 15.525561820332326 5 23.447362477942498 31.977634364150674 29.30470547255683 15.270297685349993 6 21.753241160731715 41.134080896003425 26.939337566842358 10.173340376422493 7 87.67425904022599 4.214513739765511 6.386435928941355 1.7247912910671428 8 88.02076754360783 3.6163296318837586 6.473374060761955 1.889528763746464 9 83.56582226152062 5.7557636584254865 7.8595994625816745 2.8188146174722197 10-11 40.10883773717794 26.777351300866226 19.785291044176244 13.328519917779587 12-13 29.920999697606497 26.13605698012241 27.44874143058921 16.494201891681882 14-15 17.41643030212556 31.06035812577273 34.488050671964295 17.035160900137416 16-17 22.05491695661993 24.519519691941404 32.76813978235323 20.65742356908543 18-19 24.73964015173264 27.489794219308017 29.431332751512922 18.33923287744642 20-21 27.049648993871745 27.61582340985037 28.19977301348522 17.13475458279266 22-23 22.56058874866507 25.212441004558865 30.369350696079216 21.857619550696842 24-25 21.11991337765886 27.174912631244517 32.93072413674311 18.77444985435351 26-27 19.283901565173455 32.04167767149348 29.064154312552393 19.61026645078067 28-29 17.751910055158106 28.8175744213375 34.54317050017416 18.887345023330234 30-31 23.420687734689892 27.603837718039117 30.04767482363569 18.927799723635307 32-33 25.672466688867708 28.27395990032498 27.957595052995423 18.095978357811894 34-35 20.409958507018207 27.641804370543042 30.36360904730736 21.584628075131388 36-37 23.71733958790273 28.137380430164328 29.63097466401785 18.514305317915092 38-39 20.66134702907954 30.168703995039216 27.76955605571696 21.400392920164286 40-41 21.2880001454551 26.17818632798594 29.579180207388355 22.9546333191706 42-43 21.510249799999233 26.588642444564382 28.59010943582559 23.310998319610793 44-45 20.77921829365854 29.504179920305916 28.29419921224579 21.422402573789757 46-47 22.225587466363507 29.15874797606881 27.74079996478455 20.87486459278313 48-49 21.655106813805986 27.657043663325027 29.81913327897906 20.868716243889928 50-51 19.44524189566276 30.24155116383221 29.060757170362372 21.25244977014266 52-53 22.75965649629281 26.325052918862845 29.235016210588366 21.68027437425598 54-55 21.942476334837647 26.77256659355634 30.6599738180816 20.624983253524416 56-57 23.520161799662393 25.30610165014986 29.418820741897576 21.754915808290175 58-59 23.5074823252912 27.08541468101313 28.61180808347592 20.795294910219752 60-61 24.53384989033451 28.8278854655903 27.025318757200985 19.612945886874208 62-63 24.40791639393835 25.696725154928824 29.788965699390236 20.10639275174259 64-65 21.59898219706104 29.473533869986106 29.08183380606242 19.845650126890437 66-67 20.077804125566033 29.307743761698607 26.763332108448264 23.8511200042871 68-69 19.94945435197838 30.793921699221816 26.78790158048452 22.468722368315287 70-71 20.239910009224914 29.639539290102547 28.841928581544813 21.27862211912773 72-73 23.259586639566084 29.37341386952677 27.2979035326451 20.06909595826204 74-75 21.284076685461 30.98337218515669 25.226795126488522 22.50575600289379 76-77 24.971172138457945 28.023839325700767 26.69000646892428 20.314982066917004 78-79 19.961296502570345 28.611377459818026 29.13803019341701 22.28929584419462 80-81 18.273562769618255 27.838623305735144 29.69688400721151 24.190929917435092 82-83 19.99457414191059 27.656780504422983 30.655332651991014 21.693312701675413 84-85 18.462534784822143 27.00431389211059 29.585400326891204 24.94775099617606 86 18.75834931425575 27.228573123724875 30.206479259250752 23.806598302768624 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1264.0 1 1628.5 2 4815.0 3 4904.5 4 2400.5 5 2883.0 6 3515.5 7 3894.0 8 3971.5 9 4098.0 10 3993.0 11 3826.5 12 3915.5 13 4087.0 14 4157.0 15 4140.0 16 4467.5 17 4776.0 18 5006.5 19 5500.0 20 5935.0 21 6143.0 22 6752.0 23 8411.5 24 10113.0 25 10998.5 26 12146.0 27 15905.0 28 21101.0 29 23451.0 30 26291.5 31 31031.0 32 34267.5 33 39205.0 34 43890.5 35 51757.0 36 58538.0 37 56799.0 38 56096.5 39 59097.5 40 68069.5 41 80355.0 42 90010.0 43 94387.0 44 103102.0 45 107245.0 46 106811.5 47 117315.5 48 121820.0 49 114583.5 50 109208.0 51 95130.5 52 75203.5 53 65797.5 54 63583.5 55 62827.0 56 56572.0 57 52416.0 58 48760.5 59 38155.0 60 27255.5 61 21813.0 62 18907.0 63 14907.5 64 12321.0 65 10039.0 66 6672.5 67 4743.0 68 3680.0 69 3193.0 70 2234.5 71 1545.0 72 1213.0 73 600.5 74 296.0 75 223.0 76 140.0 77 103.5 78 86.0 79 71.0 80 56.0 81 29.5 82 22.5 83 22.5 84 16.5 85 9.5 86 4.0 87 5.0 88 4.0 89 5.5 90 6.5 91 3.0 92 1.5 93 1.0 94 1.5 95 1.0 96 0.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2089992.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.526039738665688 #Duplication Level Percentage of deduplicated Percentage of total 1 79.46868347212916 12.338339375677226 2 8.927427602711733 2.7721519144752658 3 2.7037611712134137 1.2593611016436221 4 1.287377782509145 0.799515144396492 5 0.7713472377644385 0.598798393292034 6 0.5095497421944335 0.4746773727682578 7 0.385627134615009 0.4191083551438288 8 0.30221517553977834 0.37537638600467393 9 0.25878233646307897 0.36160783556314663 >10 2.5711855082929156 9.103663776411995 >50 0.9872308942481889 11.240150623812285 >100 1.806918125012586 56.67775877438513 >500 0.013987840293403348 1.4483210411660488 >1k 0.00559513611736134 1.5785782384371974 >5k 0.0 0.0 >10k+ 3.1084089540896334E-4 0.5525916668227677 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11450 0.5478489869817683 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3800 0.1818188777756087 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 3777 0.1807183950943353 No Hit TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2665 0.1275124498084203 No Hit GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT 2483 0.11880428250443063 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.78470730988444E-5 0.0 0.0 0.06909117355473131 0.0 2 4.78470730988444E-5 0.0 0.0 0.2063644262753159 0.0 3 4.78470730988444E-5 0.0 0.0 0.2798575305551409 0.0 4 4.78470730988444E-5 0.0 0.0 0.37507320602184124 0.0 5 4.78470730988444E-5 0.0 0.0 0.5848826215602739 0.0 6 4.78470730988444E-5 0.0 0.0 0.7443090691256234 0.0 7 4.78470730988444E-5 0.0 0.0 0.8461754877530632 0.0 8 4.78470730988444E-5 0.0 0.0 1.0713916608293237 0.0 9 4.78470730988444E-5 0.0 0.0 1.146990036325498 0.0 10 4.78470730988444E-5 0.0 0.0 1.302205941458149 0.0 11 4.78470730988444E-5 0.0 0.0 1.5637380430164325 0.0 12 4.78470730988444E-5 0.0 0.0 1.7655091502742595 0.0 13 4.78470730988444E-5 0.0 0.0 1.8452223740569342 0.0 14 4.78470730988444E-5 0.0 0.0 1.884983291802074 0.0 15 4.78470730988444E-5 0.0 0.0 1.9422562383013906 0.0 16 4.78470730988444E-5 0.0 0.0 2.063548568606961 0.0 17 4.78470730988444E-5 0.0 0.0 2.209386447412239 0.0 18 4.78470730988444E-5 0.0 0.0 2.4094350600385073 0.0 19 4.78470730988444E-5 0.0 0.0 2.5212058227974077 0.0 20 4.78470730988444E-5 0.0 0.0 2.644699118465525 0.0 21 4.78470730988444E-5 0.0 0.0 2.7865178431305 0.0 22 4.78470730988444E-5 0.0 0.0 2.944604572649082 0.0 23 4.78470730988444E-5 0.0 0.0 3.098959230465954 0.0 24 4.78470730988444E-5 0.0 0.0 3.2264238332012756 0.0 25 4.78470730988444E-5 0.0 0.0 3.3330749591385995 0.0 26 4.78470730988444E-5 0.0 0.0 3.441687815072976 0.0 27 4.78470730988444E-5 0.0 0.0 3.5704921358550656 0.0 28 4.78470730988444E-5 0.0 0.0 3.7002055510260328 0.0 29 4.78470730988444E-5 0.0 0.0 3.848579324705549 0.0 30 4.78470730988444E-5 0.0 0.0 4.01704886908658 0.0 31 4.78470730988444E-5 0.0 0.0 4.166140348862579 0.0 32 4.78470730988444E-5 0.0 0.0 4.3057102610919085 0.0 33 4.78470730988444E-5 0.0 0.0 4.4458064911253246 0.0 34 4.78470730988444E-5 0.0 0.0 4.605041550398279 0.0 35 4.78470730988444E-5 0.0 0.0 4.776094836726648 0.0 36 4.78470730988444E-5 0.0 0.0 4.9312628947862 0.0 37 4.78470730988444E-5 0.0 0.0 5.092507531129305 0.0 38 4.78470730988444E-5 0.0 0.0 5.273943632320123 0.0 39 4.78470730988444E-5 0.0 0.0 5.555332269214428 0.0 40 4.78470730988444E-5 0.0 0.0 5.749687080141934 0.0 41 4.78470730988444E-5 0.0 0.0 5.951793116911452 0.0 42 4.78470730988444E-5 0.0 0.0 6.152511588561104 0.0 43 4.78470730988444E-5 0.0 0.0 6.328540970491753 0.0 44 4.78470730988444E-5 0.0 0.0 6.511890954606525 0.0 45 4.78470730988444E-5 0.0 0.0 6.698350998472722 0.0 46 4.78470730988444E-5 0.0 0.0 6.891461785499658 0.0 47 4.78470730988444E-5 0.0 0.0 7.09423768129256 0.0 48 4.78470730988444E-5 0.0 0.0 7.293520740749247 0.0 49 4.78470730988444E-5 0.0 0.0 7.494574141910591 0.0 50 4.78470730988444E-5 0.0 0.0 7.702278286232675 0.0 51 4.78470730988444E-5 0.0 0.0 7.917207338592684 0.0 52 4.78470730988444E-5 0.0 0.0 8.164289624075115 0.0 53 4.78470730988444E-5 0.0 0.0 8.394481892753657 0.0 54 4.78470730988444E-5 0.0 0.0 8.619889454122312 0.0 55 4.78470730988444E-5 0.0 0.0 8.836684542333176 0.0 56 4.78470730988444E-5 0.0 0.0 9.052570536155162 0.0 57 4.78470730988444E-5 0.0 0.0 9.280801074836651 0.0 58 9.56941461976888E-5 0.0 0.0 9.496447833293141 0.0 59 9.56941461976888E-5 0.0 0.0 9.741711929997818 0.0 60 9.56941461976888E-5 0.0 0.0 10.006354091307527 0.0 61 9.56941461976888E-5 0.0 0.0 10.268747440181588 0.0 62 9.56941461976888E-5 0.0 0.0 10.588270194335673 0.0 63 9.56941461976888E-5 0.0 0.0 10.871668408300128 0.0 64 9.56941461976888E-5 0.0 0.0 11.145162278133123 0.0 65 9.56941461976888E-5 0.0 0.0 11.40200536652772 0.0 66 9.56941461976888E-5 0.0 0.0 11.638848378367 0.0 67 9.56941461976888E-5 0.0 0.0 11.90459102235798 0.0 68 9.56941461976888E-5 0.0 0.0 12.193348108509506 0.0 69 9.56941461976888E-5 0.0 0.0 12.59071805059541 0.0 70 1.435412192965332E-4 0.0 0.0 12.865073167744184 0.0 71 1.435412192965332E-4 0.0 0.0 13.151629288533162 0.0 72 1.435412192965332E-4 0.0 0.0 13.434166255181838 0.0 73 1.435412192965332E-4 0.0 0.0 13.729813319859598 0.0 74 1.435412192965332E-4 0.0 0.0 14.054503557908356 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGG 90 0.0 71.11111 2 GGCGATA 250 0.0 68.8 8 CGTTTTT 5745 0.0 68.233246 1 CGGGATC 530 0.0 67.16981 6 TCGATAG 85 0.0 65.882355 1 TCGTAGG 375 0.0 65.066666 2 CGAGGGA 1205 0.0 65.06224 4 TTGCGGG 1140 0.0 64.912285 3 CCGATCC 3075 0.0 64.0 80 GCGGGAT 1295 0.0 63.62934 5 TAGGGCG 340 0.0 63.529415 5 TTTGCGG 640 0.0 63.125 2 GGGCGAT 1220 0.0 62.95082 7 GTTAGCG 70 0.0 62.857143 1 ATAGGGC 770 0.0 62.85714 4 AGGGATT 3075 0.0 62.569107 6 TAAGGGA 2475 0.0 62.545456 4 TAGGGTA 1670 0.0 62.275448 5 TTAGGGA 2475 0.0 62.060608 4 TTGAGGG 3715 0.0 61.911167 3 >>END_MODULE