##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547768_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2559107 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85650814913171 31.0 31.0 33.0 31.0 34.0 2 32.31298105159339 33.0 31.0 34.0 31.0 34.0 3 32.480009237597336 34.0 31.0 34.0 31.0 34.0 4 36.04876662054381 37.0 35.0 37.0 35.0 37.0 5 36.00817394505193 37.0 35.0 37.0 35.0 37.0 6 36.070854403508726 37.0 35.0 37.0 35.0 37.0 7 36.28314095502845 37.0 36.0 37.0 35.0 37.0 8 36.24646136328024 37.0 37.0 37.0 35.0 37.0 9 38.1505845593795 39.0 39.0 39.0 37.0 39.0 10-11 37.6336050036204 39.0 37.5 39.0 35.0 39.0 12-13 36.77885821108691 39.0 35.0 39.0 33.0 39.0 14-15 37.80618571243797 40.0 35.0 41.0 33.0 41.0 16-17 37.9985782149789 40.0 35.0 41.0 34.0 41.0 18-19 37.897065460725166 40.0 36.0 41.0 34.0 41.0 20-21 37.7235871731819 40.0 35.0 41.0 34.0 41.0 22-23 37.530620837659384 39.0 35.0 41.0 33.0 41.0 24-25 37.47001649403484 39.0 35.0 41.0 33.0 41.0 26-27 37.456932046999206 39.0 35.0 41.0 33.0 41.0 28-29 37.470389475703826 39.0 35.0 41.0 33.0 41.0 30-31 37.31284350361278 39.0 35.0 41.0 33.0 41.0 32-33 37.005779750514534 39.0 35.0 41.0 32.5 41.0 34-35 36.76358022544583 39.0 35.0 41.0 32.0 41.0 36-37 36.57727891018234 39.0 35.0 41.0 31.0 41.0 38-39 36.489632907103925 39.0 35.0 41.0 31.0 41.0 40-41 36.34160783429532 38.5 35.0 41.0 31.0 41.0 42-43 36.298234110570604 38.0 35.0 41.0 31.0 41.0 44-45 36.188735953596314 38.0 35.0 41.0 31.0 41.0 46-47 36.104043324487805 38.0 35.0 40.5 31.0 41.0 48-49 36.01299046894093 38.0 35.0 40.0 30.5 41.0 50-51 35.83190386333983 37.5 35.0 40.0 30.0 41.0 52-53 35.65733320255855 37.0 35.0 40.0 30.0 41.0 54-55 35.46582890047192 37.0 35.0 40.0 29.5 41.0 56-57 35.1627638078439 36.0 34.5 40.0 28.5 41.0 58-59 34.855903836768064 36.0 34.0 40.0 28.0 41.0 60-61 34.5631935280549 35.0 34.0 39.0 27.5 41.0 62-63 34.17746932816799 35.0 33.5 39.0 26.5 40.5 64-65 33.907588662764 35.0 33.5 38.5 26.0 40.0 66-67 33.65551381790601 35.0 34.0 37.5 26.0 40.0 68-69 33.260637988173215 35.0 33.0 37.0 25.5 39.5 70-71 33.04124817758695 35.0 33.0 36.5 25.0 39.0 72-73 32.78946464528447 35.0 33.0 36.0 25.0 39.0 74-75 32.50328923331459 35.0 33.0 36.0 24.5 38.0 76-77 30.466205008231384 33.0 30.0 34.5 20.0 36.0 78-79 31.584298155567545 34.0 31.5 35.0 23.0 37.0 80-81 31.87627559144655 35.0 32.5 35.0 23.5 36.5 82-83 31.74824167180192 35.0 32.5 35.0 23.0 36.0 84-85 31.567411405619225 35.0 32.0 35.0 22.0 36.0 86 31.164631256137394 34.0 31.0 35.0 20.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 22.0 10 13.0 11 31.0 12 63.0 13 119.0 14 333.0 15 896.0 16 2223.0 17 4903.0 18 9754.0 19 15058.0 20 18394.0 21 19231.0 22 17527.0 23 16304.0 24 16804.0 25 18193.0 26 22163.0 27 27011.0 28 33157.0 29 42010.0 30 52960.0 31 66713.0 32 85420.0 33 118677.0 34 310379.0 35 278290.0 36 226122.0 37 386172.0 38 524786.0 39 244591.0 40 782.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.137189652484242 24.288120817144417 30.368562158596728 14.206127371774608 2 29.076392663534584 26.484121218847044 31.74591761891941 12.693568498698959 3 29.07670527258141 25.364824526680597 32.5966831398609 12.961787060877095 4 25.749333654278622 27.29491185792544 32.50700341955221 14.448751068243727 5 24.574470704038557 30.85560705355423 30.656592319117564 13.913329923289647 6 22.280740899071432 40.62897721744343 26.075033204942194 11.015248678542946 7 89.22202158799925 3.411697908684553 5.911124466464279 1.4551560368519174 8 90.30271106288248 2.669915716693362 5.480349199935759 1.547024020488397 9 86.3793112206719 5.179072231055599 6.479056952288436 1.9625595959840678 10-11 42.33836256162794 27.56883553520818 19.08659934891351 11.006202554250368 12-13 31.11319690814022 25.997076323889544 26.793037571309053 16.096689196661178 14-15 16.126484746436944 32.09015879367295 34.998360756310696 16.784995703579416 16-17 22.13162638373464 25.783837877822226 32.37910724326885 19.705428495174292 18-19 24.22198446567494 27.670765622539424 29.809343649952897 18.297906261832743 20-21 27.081458493138427 28.141652537389017 28.74262389184977 16.03426507762278 22-23 22.289259495597488 24.465077075714305 31.00395958433938 22.24170384434883 24-25 19.341844635648293 26.685519597265767 34.93261516614975 19.040020600936185 26-27 18.19337761179974 34.33051060389425 29.044799611739563 18.431312172566447 28-29 16.40929824348884 29.239437819520635 35.5902273722826 18.761036564707922 30-31 22.955546602779798 28.799792271288382 30.06775410328681 18.176907022645008 32-33 26.63477924135255 27.441994414457856 28.414482083007865 17.508744261181732 34-35 19.774808165504606 28.84144742677817 30.283845106906433 21.09989930081079 36-37 23.726440512256815 28.987514003908394 29.40355756910516 17.88248791472963 38-39 19.91085171507092 31.259478403990144 28.05420015653898 20.775469724399954 40-41 20.99077920540251 27.108069338249628 28.409226343408072 23.49192511293979 42-43 21.154625422071057 25.74784876130619 28.721581395385186 24.375944421237563 44-45 19.24749531770262 31.513590482930177 28.297742142083155 20.941172057284042 46-47 21.165371358055758 30.326985155368654 27.822693619297667 20.684949867277922 48-49 21.469579036749927 26.961514309483736 31.52021388710984 20.048692766656494 50-51 19.60158367743123 30.921294029518894 28.47688666398083 21.000235629069046 52-53 21.85430308306765 27.04578198566922 30.36860123472758 20.73131369653555 54-55 22.609683768595843 26.818397980232948 30.255260917187126 20.316657333984082 56-57 23.106907995640665 25.570423589166065 28.856882498465286 22.465785916727985 58-59 24.619115183538636 27.744228748543925 27.810150181293707 19.826505886623732 60-61 24.402887413461023 28.5476926130873 27.26277174029847 19.786648233153205 62-63 23.028775271999177 25.722664194971134 31.06554356656443 20.183016966465257 64-65 20.26744094717415 29.628851001540774 30.53758596260336 19.566122088681716 66-67 19.456826150684595 28.85086477431385 25.867695254633745 25.82461382036781 68-69 18.40153616085611 31.366136703154655 25.996959095496987 24.23536804049225 70-71 19.311443405844305 30.522326733505086 29.03663270039119 21.12959716025942 72-73 22.875753143577036 29.84351572638424 27.32208930693402 19.9586418231047 74-75 21.95746406852078 31.47027459187912 25.049401998431485 21.52285934116862 76-77 25.48568699941034 28.00162322247565 26.441391469758784 20.07129830835522 78-79 19.74772840682316 28.490328852994423 30.44225974138635 21.319682998796065 80-81 17.314614043101752 28.46229172910707 30.749593510548795 23.47350071724238 82-83 18.909408633558503 27.181219855207306 31.566011112470093 22.3433603987641 84-85 17.48623640981014 26.860678353816393 29.91354015287364 25.73954508349983 86 18.185093472058806 27.283462551585373 31.440733036953905 23.09071093940191 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1591.0 1 2032.0 2 5824.5 3 6109.5 4 3291.0 5 4018.0 6 4911.0 7 5325.0 8 5461.5 9 5620.0 10 5673.0 11 5425.0 12 5241.5 13 5419.5 14 5502.0 15 5406.0 16 5465.0 17 5585.5 18 5762.5 19 6295.0 20 6450.0 21 6284.0 22 7070.5 23 8442.0 24 10110.5 25 14361.5 26 18633.0 27 21061.5 28 25414.5 29 28443.0 30 33746.5 31 41500.0 32 44777.5 33 50459.0 34 58077.5 35 63441.5 36 66041.0 37 69219.0 38 73455.0 39 78740.5 40 95111.0 41 109934.0 42 118699.0 43 124784.0 44 128800.0 45 138044.0 46 145518.5 47 149099.5 48 145283.0 49 130147.5 50 120163.0 51 107290.0 52 88403.0 53 78176.0 54 71386.0 55 67685.5 56 61132.5 57 55703.0 58 50952.5 59 40001.0 60 30789.5 61 24409.5 62 18604.5 63 13339.5 64 10510.0 65 8936.5 66 6883.5 67 5790.0 68 4226.0 69 2450.0 70 1515.0 71 1406.0 72 1236.5 73 755.5 74 367.5 75 246.0 76 156.0 77 123.5 78 118.0 79 100.0 80 74.5 81 41.0 82 27.5 83 17.5 84 11.0 85 7.0 86 5.0 87 4.5 88 4.0 89 3.5 90 4.0 91 3.5 92 1.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 2559107.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.490229084149398 #Duplication Level Percentage of deduplicated Percentage of total 1 80.16758304183537 11.61646643398765 2 8.591159529360583 2.4897573935781594 3 2.4846798338583724 1.0801073998012227 4 1.183443217263849 0.6859345330494384 5 0.7112661487911727 0.5153204717892391 6 0.480096819878394 0.4174027741565724 7 0.3734090609019682 0.37875479841966286 8 0.282654937697207 0.3276587839198804 9 0.24212426223172165 0.3157592423911477 >10 2.293035690651376 7.60628058958648 >50 1.0578070521445122 11.237643954929254 >100 2.114793080796308 60.813494805176916 >500 0.014956103824313212 1.3960933015380426 >1k 0.002719291604420584 0.5570030456532915 >5k 0.0 0.0 >10k+ 2.719291604420584E-4 0.5623224720230704 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14271 0.5576554634096972 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03712232431078497 0.0 2 0.0 0.0 0.0 0.12086247272974518 0.0 3 0.0 0.0 0.0 0.1788905270471301 0.0 4 0.0 0.0 0.0 0.27193079460921327 0.0 5 0.0 0.0 0.0 0.4503524080861019 0.0 6 0.0 0.0 0.0 0.6086498141734598 0.0 7 0.0 0.0 0.0 0.701103939772741 0.0 8 0.0 0.0 0.0 0.8952732339835732 0.0 9 0.0 0.0 0.0 0.9589673272747095 0.0 10 0.0 0.0 0.0 1.0734213145444875 0.0 11 0.0 0.0 0.0 1.3052990750289066 0.0 12 0.0 0.0 0.0 1.4746159500169396 0.0 13 0.0 0.0 0.0 1.537802053606981 0.0 14 0.0 0.0 0.0 1.5668356188311001 0.0 15 0.0 0.0 0.0 1.6099756672933176 0.0 16 0.0 0.0 0.0 1.6942238054133727 0.0 17 0.0 0.0 0.0 1.802034850438063 0.0 18 0.0 0.0 0.0 1.921685963111351 0.0 19 0.0 0.0 0.0 2.009919866578459 0.0 20 0.0 0.0 0.0 2.101279860513843 0.0 21 0.0 0.0 0.0 2.2134283560632673 0.0 22 0.0 0.0 0.0 2.3343689810547197 0.0 23 0.0 0.0 0.0 2.459959665617733 0.0 24 0.0 0.0 0.0 2.549639385926419 0.0 25 0.0 0.0 0.0 2.6322854026814824 0.0 26 0.0 0.0 0.0 2.71520495235252 0.0 27 0.0 0.0 0.0 2.820632353395149 0.0 28 0.0 0.0 0.0 2.9194949644543975 0.0 29 0.0 0.0 0.0 3.0418814062874278 0.0 30 0.0 0.0 0.0 3.1716141607209076 0.0 31 0.0 0.0 0.0 3.284739559541668 0.0 32 0.0 0.0 0.0 3.395676695034635 0.0 33 0.0 0.0 0.0 3.5061449169573606 0.0 34 0.0 0.0 0.0 3.62411575600395 0.0 35 0.0 0.0 0.0 3.7550207943630336 0.0 36 0.0 0.0 0.0 3.8797908801781245 0.0 37 0.0 0.0 0.0 4.017260708520589 0.0 38 0.0 0.0 0.0 4.166375223857385 0.0 39 0.0 0.0 0.0 4.418299039469628 0.0 40 0.0 0.0 0.0 4.573431278957855 0.0 41 0.0 0.0 0.0 4.7357144503922655 0.0 42 0.0 0.0 0.0 4.898232078611797 0.0 43 0.0 0.0 0.0 5.03624897278621 0.0 44 0.0 0.0 0.0 5.182628158963263 0.0 45 0.0 0.0 0.0 5.3252169604475315 0.0 46 0.0 0.0 0.0 5.487617360274502 0.0 47 0.0 0.0 0.0 5.6673675622004085 0.0 48 0.0 0.0 0.0 5.82582127281118 0.0 49 0.0 0.0 0.0 6.002640764923076 3.907613085345787E-5 50 0.0 0.0 0.0 6.1789131912030255 3.907613085345787E-5 51 0.0 0.0 0.0 6.362141168774889 3.907613085345787E-5 52 0.0 0.0 0.0 6.584601581723625 3.907613085345787E-5 53 0.0 0.0 0.0 6.758216831105538 3.907613085345787E-5 54 0.0 0.0 0.0 6.955629444177207 3.907613085345787E-5 55 0.0 0.0 0.0 7.1392872591884595 3.907613085345787E-5 56 3.907613085345787E-5 0.0 0.0 7.324078281994462 3.907613085345787E-5 57 3.907613085345787E-5 0.0 0.0 7.53051748129328 3.907613085345787E-5 58 3.907613085345787E-5 0.0 0.0 7.718161061651584 3.907613085345787E-5 59 3.907613085345787E-5 0.0 0.0 7.920067429771401 3.907613085345787E-5 60 7.815226170691573E-5 0.0 0.0 8.134868921072858 3.907613085345787E-5 61 7.815226170691573E-5 0.0 0.0 8.359478521218534 3.907613085345787E-5 62 7.815226170691573E-5 0.0 0.0 8.630471488687265 3.907613085345787E-5 63 7.815226170691573E-5 0.0 0.0 8.89337569706933 3.907613085345787E-5 64 1.172283925603736E-4 0.0 0.0 9.129629984209336 3.907613085345787E-5 65 1.172283925603736E-4 0.0 0.0 9.352012244896365 3.907613085345787E-5 66 1.172283925603736E-4 0.0 0.0 9.559506499728226 3.907613085345787E-5 67 1.5630452341383147E-4 0.0 0.0 9.79505741651287 3.907613085345787E-5 68 1.5630452341383147E-4 0.0 0.0 10.06651929755184 3.907613085345787E-5 69 1.5630452341383147E-4 0.0 0.0 10.46146175208774 3.907613085345787E-5 70 1.5630452341383147E-4 0.0 0.0 10.715378450373509 3.907613085345787E-5 71 1.5630452341383147E-4 0.0 0.0 10.966129982060147 3.907613085345787E-5 72 1.5630452341383147E-4 0.0 0.0 11.205393131275871 3.907613085345787E-5 73 1.5630452341383147E-4 0.0 0.0 11.455714825523122 3.907613085345787E-5 74 1.5630452341383147E-4 0.0 0.0 11.743432376997132 3.907613085345787E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCACG 95 0.0 71.57894 1 CGTTTTT 7485 0.0 69.84635 1 TACGGGA 1365 0.0 69.45055 4 CGTAAGG 545 0.0 67.52294 2 CGTTAGG 505 0.0 66.53465 2 TATTACG 115 0.0 66.08695 1 GTACGGG 1025 0.0 65.95122 3 GGGCGAT 1680 0.0 64.28572 7 TAGGGAC 2990 0.0 64.08026 5 ACGGGAT 1810 0.0 63.646408 5 AGGGATT 5375 0.0 63.03256 6 ATTGCGG 795 0.0 62.89308 2 TTGCGGG 2165 0.0 62.817554 3 ATAGGGA 4020 0.0 62.48756 4 CGGGATC 1270 0.0 62.047245 6 TAGGGAT 5020 0.0 61.832672 5 CTACGGG 680 0.0 61.76471 3 TAGTCGG 130 0.0 61.53846 2 GCGGGAT 2455 0.0 61.425663 5 CGGGATA 1060 0.0 61.132072 6 >>END_MODULE