##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547761_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3748276 Sequences flagged as poor quality 0 Sequence length 86 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.7549918949405 31.0 31.0 33.0 30.0 34.0 2 32.19862278017948 33.0 31.0 34.0 31.0 34.0 3 32.3525530137055 34.0 31.0 34.0 30.0 34.0 4 35.94651407740518 37.0 35.0 37.0 35.0 37.0 5 35.895867326739015 37.0 35.0 37.0 35.0 37.0 6 35.95155532836963 37.0 35.0 37.0 35.0 37.0 7 36.2515497791518 37.0 35.0 37.0 35.0 37.0 8 36.220263662547794 37.0 36.0 37.0 35.0 37.0 9 38.103023630063525 39.0 39.0 39.0 37.0 39.0 10-11 37.45766800523761 39.0 37.0 39.0 34.5 39.0 12-13 36.88850367475607 39.0 35.0 39.0 33.0 39.0 14-15 37.96799261847313 40.0 36.0 41.0 33.0 41.0 16-17 38.13303129225275 40.0 36.0 41.0 34.0 41.0 18-19 38.03930020094572 40.0 36.0 41.0 34.0 41.0 20-21 37.86459561675821 40.0 35.0 41.0 33.5 41.0 22-23 37.67303408286904 39.5 35.0 41.0 33.0 41.0 24-25 37.60891567216502 39.0 35.0 41.0 33.0 41.0 26-27 37.59999450414004 40.0 35.0 41.0 33.0 41.0 28-29 37.55663256921315 40.0 35.0 41.0 33.0 41.0 30-31 37.371827474817756 39.0 35.0 41.0 33.0 41.0 32-33 37.060289717192646 39.0 35.0 41.0 32.5 41.0 34-35 36.799436327527644 39.0 35.0 41.0 31.0 41.0 36-37 36.6224625667907 39.0 35.0 41.0 31.0 41.0 38-39 36.52718489780368 39.0 35.0 41.0 31.0 41.0 40-41 36.39636982442062 39.0 35.0 41.0 30.0 41.0 42-43 36.37783543687818 39.0 35.0 41.0 30.0 41.0 44-45 36.282510412787104 39.0 35.0 41.0 30.0 41.0 46-47 36.17401706811345 38.0 35.0 41.0 30.0 41.0 48-49 36.06892115201762 38.0 35.0 40.5 30.0 41.0 50-51 35.908150173573134 38.0 35.0 40.0 29.5 41.0 52-53 35.738809255241605 38.0 35.0 40.0 29.0 41.0 54-55 35.55320232554914 37.5 35.0 40.0 29.0 41.0 56-57 35.26947988888759 37.0 34.5 40.0 28.0 41.0 58-59 34.97028820716511 37.0 34.0 40.0 27.0 41.0 60-61 34.64115716131896 36.0 34.0 40.0 26.5 41.0 62-63 34.24340723575318 36.0 33.5 39.0 26.0 41.0 64-65 33.845574205314655 35.0 33.0 39.0 25.0 40.5 66-67 33.49015400680206 35.0 33.0 38.5 23.5 40.0 68-69 32.988529926825024 35.0 33.0 37.5 22.0 40.0 70-71 32.63621342185047 35.0 33.0 37.0 21.0 39.5 72-73 32.30583140088937 35.0 32.5 36.5 20.0 39.0 74-75 31.949088460935105 35.0 32.0 36.0 19.5 38.5 76-77 29.895609875046553 33.0 29.0 34.5 16.0 36.0 78-79 30.945931542928 34.0 30.5 35.0 17.0 37.0 80-81 31.08052488664122 35.0 31.0 35.0 17.0 37.0 82-83 30.852786454359283 35.0 31.0 35.0 14.0 36.0 84-85 30.591790465803477 34.0 31.0 35.0 11.5 36.0 86 30.15712957103479 34.0 30.0 35.0 10.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 4.0 10 12.0 11 39.0 12 52.0 13 121.0 14 448.0 15 1319.0 16 3494.0 17 8448.0 18 17377.0 19 26235.0 20 29226.0 21 27461.0 22 24412.0 23 24051.0 24 26124.0 25 30896.0 26 37645.0 27 47056.0 28 58513.0 29 74372.0 30 93808.0 31 114555.0 32 138364.0 33 174751.0 34 372352.0 35 366389.0 36 326082.0 37 525990.0 38 783669.0 39 413659.0 40 1345.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.928512201342695 24.228338574854146 31.3164772284645 13.526671995338656 2 29.52079836170015 25.427103020161802 31.845733878721845 13.206364739416202 3 28.611046785242067 24.403859267567277 33.8311533088812 13.153940638309452 4 25.632557474422907 27.448352255810406 32.65063725296643 14.268453016800256 5 24.271371691945845 31.838877393233584 30.175739459954386 13.714011454866185 6 22.462860258956386 40.70588718653589 26.429083664063157 10.402168890444567 7 88.76056619096353 3.170257473035604 6.540660292891985 1.5285160431088853 8 89.35091759518242 2.717409283627993 6.2982021601397555 1.6334709610498266 9 85.21197478520793 4.959906901199378 7.670913241180745 2.1572050724119567 10-11 35.71168451842927 28.70937198861557 23.95906811558167 11.619875377373491 12-13 28.19728323101074 26.13232056550798 28.755086338359288 16.91530986512199 14-15 15.676847169205255 32.62581250686982 34.54333405544309 17.15400626848183 16-17 20.72735572300439 27.87377450326497 32.46087001063956 18.937999763091085 18-19 21.96938005632456 29.446750986320108 30.559289123853205 18.024579833502123 20-21 24.390946664546583 29.726039384506368 30.50048875803169 15.382525192915356 22-23 20.314205784205857 25.82576629895984 32.65741370165911 21.20261421517519 24-25 17.667028788701792 29.734896789884203 34.081841892112536 18.516232529301472 26-27 17.267818591800605 35.952835383520316 28.638899590104888 18.14044643457419 28-29 15.909620849691967 31.12684338079693 34.41671584483107 18.54681992468004 30-31 20.51189666929543 31.38146710647775 30.40136318670237 17.705273037524453 32-33 23.421060775673936 30.171724280709316 28.54525653927299 17.861958404343756 34-35 18.709961593009695 29.925771207883304 30.877288652169693 20.486978546937312 36-37 21.126992782815353 30.952109716573702 29.926798346759952 17.994099153851 38-39 18.73170492247636 31.83447536947653 29.07580711772559 20.358012590321522 40-41 19.635573794459106 28.540534368333603 30.167682422532387 21.65620941467491 42-43 19.471591739775835 28.49879517943716 29.164954768538927 22.864658312248086 44-45 18.85446802743448 32.20621960602688 28.276332906114703 20.662979460423937 46-47 19.74264968748299 31.956571501138125 28.079802554561084 20.220976256817803 48-49 20.284538811976493 28.869525616576798 30.908289570992103 19.93764600045461 50-51 17.92945610195194 31.561616593868752 29.088706381280353 21.420220922898956 52-53 20.693726929393673 28.17480623091789 30.831307513107358 20.300159326581074 54-55 20.68514965280038 28.903754686154382 30.16105270796494 20.250042953080296 56-57 20.63746106209895 27.45917056268002 29.815573879831685 22.087794495389346 58-59 21.88258015151499 29.25863783776862 28.792196732577857 20.066585278138536 60-61 21.66677427169184 30.917467123552267 27.555348112038708 19.860410492717186 62-63 21.036324432885944 29.08767924240371 30.433564657458522 19.442431667251824 64-65 18.83971457811538 32.48870947603645 29.25474271371692 19.416833232131253 66-67 17.703458870157906 31.18548367302728 26.81209974932476 24.298957707490057 68-69 16.976938197720763 33.66386306664717 26.738812723502754 22.62038601212931 70-71 18.1292012647948 31.86805080522352 28.777883485634465 21.22486444434721 72-73 20.492754535685208 31.202051289712923 28.335106593004355 19.97008758159751 74-75 19.4408442708061 33.05859813951801 26.477279154469947 21.023278435205945 76-77 22.71538968848612 30.619916996507197 27.0231301003448 19.641563214661886 78-79 18.12239813717026 31.411827730935503 29.425754666945554 21.040019464948685 80-81 16.185987904839454 30.832734835961915 30.859093620640525 22.1221836385581 82-83 17.874577539113982 29.33888806480633 30.749229779237176 22.037304616842516 84-85 16.458259743946282 29.3601511734995 29.874267529925756 24.307321552628462 86 16.87501133854604 29.89174223029468 30.245878371816804 22.98736805934248 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2486.0 1 3172.5 2 12283.0 3 12455.5 4 4774.0 5 7316.5 6 11897.5 7 14506.0 8 16004.5 9 17388.5 10 16168.5 11 14438.5 12 12889.5 13 11854.5 14 11744.0 15 11286.5 16 10962.5 17 11036.5 18 11235.0 19 11787.5 20 12650.5 21 13219.0 22 13494.5 23 14375.5 24 17427.5 25 20661.0 26 26339.5 27 32961.5 28 40049.5 29 45407.0 30 51407.5 31 61917.5 32 73162.5 33 80853.5 34 86420.5 35 98657.0 36 106282.0 37 115506.5 38 132683.5 39 152536.0 40 173731.5 41 192468.0 42 204724.0 43 207539.0 44 210307.5 45 212721.5 46 215279.0 47 211982.5 48 201740.0 49 179629.5 50 161553.0 51 143863.0 52 114364.5 53 92582.5 54 77733.0 55 69561.5 56 59573.5 57 52881.0 58 47360.5 59 35890.5 60 24663.5 61 16849.0 62 12023.5 63 8109.0 64 6483.0 65 5170.5 66 3234.0 67 2024.0 68 1187.0 69 709.0 70 426.5 71 371.0 72 316.5 73 228.0 74 140.0 75 79.0 76 95.0 77 79.5 78 30.5 79 20.0 80 30.5 81 29.5 82 13.0 83 6.5 84 5.0 85 4.0 86 3.0 87 3.5 88 3.0 89 2.0 90 1.0 91 0.0 92 1.0 93 2.0 94 1.0 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 3748276.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.014482533068115 #Duplication Level Percentage of deduplicated Percentage of total 1 75.52747756309893 12.095334702009417 2 10.280237794203174 3.2926537718210684 3 3.7022100670276434 1.778669353564894 4 1.8828218695237469 1.206096717694668 5 1.1691000019489346 0.9361265780310556 6 0.8195635782533887 0.7874931965206616 7 0.6055554815723397 0.6788360377710719 8 0.4837627071298022 0.619776753878397 9 0.3960443411858597 0.5708200665817277 >10 2.8161690673442963 9.290880034293233 >50 0.7328953713115197 8.600668976339664 >100 1.5566394823077319 55.75893368592817 >500 0.02245715206939382 2.185635730151487 >1k 0.004896672255732488 1.3896963562091769 >5k 0.0 0.0 >10k+ 1.688507674390513E-4 0.8083780392052098 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29895 0.7975666679828273 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3994 0.10655565385259784 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.667893186094087E-5 0.0 0.0 0.08465225079476538 0.0 2 2.667893186094087E-5 0.0 0.0 0.30440661253333534 0.0 3 2.667893186094087E-5 0.0 0.0 0.43358600060401103 0.0 4 2.667893186094087E-5 0.0 0.0 0.6260211361169775 0.0 5 2.667893186094087E-5 0.0 0.0 1.1127782479198436 0.0 6 2.667893186094087E-5 0.0 0.0 1.4562161377657354 0.0 7 2.667893186094087E-5 0.0 0.0 1.7128941411998475 0.0 8 2.667893186094087E-5 0.0 0.0 2.216859164053021 0.0 9 2.667893186094087E-5 0.0 0.0 2.3864571338930216 0.0 10 2.667893186094087E-5 0.0 0.0 2.721944702044353 0.0 11 2.667893186094087E-5 0.0 0.0 3.335239987663662 0.0 12 2.667893186094087E-5 0.0 0.0 3.733983303257284 0.0 13 2.667893186094087E-5 0.0 0.0 3.8777027091921727 0.0 14 2.667893186094087E-5 0.0 0.0 3.937623590151846 0.0 15 2.667893186094087E-5 0.0 0.0 4.032920734759126 0.0 16 2.667893186094087E-5 0.0 0.0 4.245952005668739 0.0 17 2.667893186094087E-5 0.0 0.0 4.522025592565756 0.0 18 2.667893186094087E-5 0.0 0.0 4.828833308966575 0.0 19 2.667893186094087E-5 0.0 0.0 5.042851700355043 0.0 20 2.667893186094087E-5 0.0 0.0 5.2556428608779076 0.0 21 2.667893186094087E-5 0.0 0.0 5.5216584904633494 0.0 22 2.667893186094087E-5 0.0 0.0 5.820809353420079 0.0 23 2.667893186094087E-5 0.0 0.0 6.120893978991942 0.0 24 2.667893186094087E-5 0.0 0.0 6.3294698682807775 0.0 25 2.667893186094087E-5 0.0 0.0 6.517369585377384 0.0 26 2.667893186094087E-5 0.0 0.0 6.689341980153009 0.0 27 1.0671572744376348E-4 0.0 0.0 6.8832444569183275 0.0 28 1.0671572744376348E-4 0.0 0.0 7.080748589484872 0.0 29 1.0671572744376348E-4 0.0 0.0 7.318511230229578 0.0 30 1.0671572744376348E-4 0.0 0.0 7.5685461796303155 0.0 31 1.0671572744376348E-4 0.0 0.0 7.790755003100092 0.0 32 1.0671572744376348E-4 0.0 0.0 7.986044784322179 0.0 33 1.0671572744376348E-4 0.0 0.0 8.192272927607252 0.0 34 1.0671572744376348E-4 0.0 0.0 8.410506590229748 0.0 35 1.0671572744376348E-4 0.0 0.0 8.662729212043084 0.0 36 1.0671572744376348E-4 0.0 0.0 8.889153306746888 0.0 37 1.0671572744376348E-4 0.0 0.0 9.127582920788116 0.0 38 1.0671572744376348E-4 0.0 0.0 9.376230565732087 0.0 39 1.0671572744376348E-4 0.0 0.0 9.749308748875483 0.0 40 1.0671572744376348E-4 0.0 0.0 10.008227782585914 0.0 41 1.0671572744376348E-4 0.0 0.0 10.260930625172746 0.0 42 1.0671572744376348E-4 0.0 0.0 10.527799980577738 0.0 43 1.0671572744376348E-4 0.0 0.0 10.77994256559549 0.0 44 1.0671572744376348E-4 0.0 0.0 11.026589290649888 0.0 45 1.0671572744376348E-4 0.0 0.0 11.258269134930298 0.0 46 1.0671572744376348E-4 0.0 0.0 11.521830302784533 0.0 47 1.0671572744376348E-4 0.0 0.0 11.788059363824862 0.0 48 1.0671572744376348E-4 0.0 0.0 12.05989100055599 0.0 49 1.0671572744376348E-4 0.0 0.0 12.338125580933742 0.0 50 1.0671572744376348E-4 0.0 0.0 12.618707907315256 0.0 51 1.0671572744376348E-4 0.0 0.0 12.896595661578816 0.0 52 1.3339465930470434E-4 0.0 0.0 13.22135829912205 0.0 53 1.3339465930470434E-4 0.0 0.0 13.512478803588637 0.0 54 1.3339465930470434E-4 0.0 0.0 13.803839418441973 0.0 55 1.3339465930470434E-4 0.0 0.0 14.093625976315511 0.0 56 1.3339465930470434E-4 0.0 0.0 14.39130949801989 0.0 57 1.6007359116564521E-4 0.0 0.0 14.676053737771712 0.0 58 1.6007359116564521E-4 0.0 0.0 14.981901012625539 0.0 59 1.6007359116564521E-4 0.0 0.0 15.269259787699731 0.0 60 1.6007359116564521E-4 0.0 0.0 15.588713317802638 0.0 61 1.867525230265861E-4 0.0 0.0 15.901096930962394 0.0 62 1.867525230265861E-4 0.0 0.0 16.248189834473234 0.0 63 1.867525230265861E-4 0.0 0.0 16.611530207487387 0.0 64 2.1343145488752696E-4 0.0 0.0 16.94552375545451 0.0 65 2.1343145488752696E-4 0.0 0.0 17.265324111671607 0.0 66 2.4011038674846784E-4 0.0 0.0 17.58101591238212 0.0 67 2.4011038674846784E-4 0.0 0.0 17.905004860901386 0.0 68 2.4011038674846784E-4 0.0 0.0 18.268238518188095 0.0 69 2.4011038674846784E-4 0.0 0.0 18.754515409217465 0.0 70 2.667893186094087E-4 0.0 0.0 19.102515396411576 0.0 71 2.667893186094087E-4 0.0 0.0 19.444512623936976 0.0 72 2.667893186094087E-4 0.0 0.0 19.78968464435383 0.0 73 2.667893186094087E-4 0.0 0.0 20.149289966907453 0.0 74 2.9346825047034956E-4 0.0 0.0 20.519940367251504 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTAGCG 285 0.0 72.98246 1 TACGGGA 1385 0.0 72.779785 4 CGTTTTT 12640 0.0 72.68987 1 TGTCGCG 45 1.1823431E-10 71.11111 1 TAGGGTA 3505 0.0 67.4465 5 CGGGTAC 440 0.0 65.454544 6 CGTAAGG 350 0.0 65.14286 2 CGAGGGA 2360 0.0 64.91525 4 CGTGCGG 250 0.0 64.0 2 TTAGCGG 1090 0.0 63.853207 2 CGTTAGG 935 0.0 63.315506 2 GGCGATT 765 0.0 63.26798 8 TAGCGGG 3060 0.0 62.87582 3 GCACCGA 440 0.0 62.727272 9 ACGGGAT 1760 0.0 61.81818 5 GTCCGCG 65 0.0 61.53846 1 GTAGGGT 3080 0.0 61.298702 4 GCGGGTC 620 0.0 61.29032 5 GGGCGAT 2345 0.0 61.23667 7 CGGGATC 1095 0.0 61.004566 6 >>END_MODULE