##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547759_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1409080 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.812608226644336 31.0 31.0 33.0 30.0 34.0 2 32.264999148380504 33.0 31.0 34.0 31.0 34.0 3 32.4214345530417 34.0 31.0 34.0 31.0 34.0 4 36.010500468390724 37.0 35.0 37.0 35.0 37.0 5 35.95589746501263 37.0 35.0 37.0 35.0 37.0 6 36.020965452635764 37.0 35.0 37.0 35.0 37.0 7 36.25421054872683 37.0 35.0 37.0 35.0 37.0 8 36.221396939847274 37.0 36.0 37.0 35.0 37.0 9 38.14451131234564 39.0 39.0 39.0 37.0 39.0 10-11 37.57447093138786 39.0 37.5 39.0 35.0 39.0 12-13 36.389513370426094 38.0 35.0 39.0 33.0 39.0 14-15 37.292903525704716 39.0 35.0 41.0 33.0 41.0 16-17 37.5604628551963 39.0 35.0 41.0 33.5 41.0 18-19 37.50355196298294 39.0 35.0 41.0 33.5 41.0 20-21 37.26848262696227 39.0 35.0 41.0 33.5 41.0 22-23 37.087935745309 38.0 35.0 41.0 33.0 41.0 24-25 37.050470519771764 38.0 35.0 41.0 33.0 41.0 26-27 37.0301512334289 38.0 35.0 41.0 33.0 41.0 28-29 37.06473408181225 38.0 35.0 41.0 33.0 41.0 30-31 36.89370333834843 38.0 35.0 41.0 33.0 41.0 32-33 36.54477354018225 38.0 35.0 41.0 32.0 41.0 34-35 36.269327504471 38.0 35.0 41.0 31.0 41.0 36-37 36.09794759701366 38.0 35.0 41.0 31.0 41.0 38-39 36.029237871519 38.0 35.0 40.5 31.0 41.0 40-41 35.87949655094104 38.0 35.0 40.0 30.0 41.0 42-43 35.860943665370314 38.0 35.0 40.0 30.0 41.0 44-45 35.75259743946405 37.0 35.0 40.0 30.0 41.0 46-47 35.69193267947881 37.0 35.0 40.0 30.0 41.0 48-49 35.63496039969341 37.0 35.0 40.0 30.0 41.0 50-51 35.45808044965509 36.0 35.0 40.0 30.0 41.0 52-53 35.25783312515968 36.0 34.5 40.0 29.0 41.0 54-55 35.087654710875185 36.0 34.0 40.0 29.0 41.0 56-57 34.77655988304426 35.5 34.0 39.5 28.0 41.0 58-59 34.46624038379652 35.0 34.0 39.0 27.0 41.0 60-61 34.16201918982598 35.0 34.0 39.0 26.5 40.5 62-63 33.723084210974534 35.0 33.5 38.0 26.0 40.0 64-65 33.48687015641411 35.0 33.0 37.5 26.0 40.0 66-67 33.279895392738524 35.0 33.0 37.0 25.0 40.0 68-69 32.9651751497431 35.0 33.0 36.5 25.0 39.0 70-71 32.789247594174924 35.0 33.0 36.0 25.0 39.0 72-73 32.56799613932495 35.0 33.0 36.0 24.5 39.0 74-75 32.2902014080109 35.0 33.0 35.0 24.0 37.5 76-77 30.252905087007125 33.0 29.5 34.5 19.5 35.5 78-79 31.27479028869901 34.0 30.5 35.0 21.0 36.0 80-81 31.68133392000454 35.0 32.0 35.0 23.0 36.0 82-83 31.603043120333837 35.0 32.0 35.0 21.5 36.0 84-85 31.447018622079653 35.0 32.0 35.0 20.0 36.0 86 31.045763193005364 34.0 31.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 3.0 10 6.0 11 8.0 12 9.0 13 54.0 14 189.0 15 486.0 16 1231.0 17 2669.0 18 5433.0 19 9195.0 20 11271.0 21 11694.0 22 10585.0 23 9453.0 24 9814.0 25 11313.0 26 13441.0 27 16126.0 28 20180.0 29 25150.0 30 31868.0 31 40467.0 32 51220.0 33 72334.0 34 206273.0 35 175296.0 36 110993.0 37 195458.0 38 251053.0 39 115501.0 40 300.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.855395009509753 24.253697447980244 29.59803559769495 14.292871944815055 2 30.3559059812076 25.083316774065345 31.32909416072899 13.23168308399807 3 28.469213955204815 23.98891475288841 33.38163908365742 14.160232208249354 4 26.356345984614077 27.769466602322083 32.17006841343288 13.704118999630966 5 23.064268884662333 32.01805433332387 31.068427626536465 13.849249155477333 6 22.299443608595677 41.03315638572686 26.707993868339624 9.959406137337838 7 89.39811792091294 3.2834899366962844 5.976594657507025 1.341797484883754 8 90.75893490788316 2.322721208164192 5.649501802594601 1.2688420813580492 9 87.4401027620859 3.9522951145428227 6.609276975047548 1.9983251483237292 10-11 46.76366849291737 23.548130695205383 17.714253271638235 11.973947540239022 12-13 32.930422687143384 27.517103358219547 24.198519601442076 15.353954353194993 14-15 15.06018111107957 33.369893831436116 36.45797257785222 15.111952479632102 16-17 20.213259715559087 22.864493144463054 35.074871547392625 21.847375592585234 18-19 24.67858460839697 26.40183665938059 31.076127686149828 17.843451046072616 20-21 27.620326738013457 26.91415675476197 28.540395151446337 16.925121355778238 22-23 21.46166292900332 24.585935504016806 30.15538507394896 23.797016493030913 24-25 18.60465693927953 25.474032702188666 37.54307775286002 18.378232605671784 26-27 16.676164589661337 36.26983563743719 28.581201918982597 18.47279785391887 28-29 14.84681494308343 28.466339739404432 37.88298038436427 18.80386493314787 30-31 23.35435177562665 29.731775342776846 29.47078945127317 17.44308343032333 32-33 27.952032531864763 27.127522922758114 27.923680699463482 16.996763845913645 34-35 19.08873165469668 28.642199165412897 29.74415930962046 22.524909870269962 36-37 24.560564339852952 28.785555113975075 29.712684872399013 16.941195673772956 38-39 19.190109858915037 32.42150906974764 27.589774888579782 20.798606182757545 40-41 20.586659380588753 26.30627785505436 28.19761830414171 24.909444460215177 42-43 20.614337014222045 24.493712209384846 28.562679194935704 26.3292715814574 44-45 18.164298691344708 32.170991001220656 28.37060351434979 21.29410679308485 46-47 20.869255116813807 30.649359866011867 27.012057512703326 21.469327504471003 48-49 20.723521730490816 25.493797371334487 32.51312913390297 21.269551764271725 50-51 19.156683793680983 32.205410622533854 28.0863400232776 20.551565560507566 52-53 22.54495841258126 25.79789649984387 30.8590356828569 20.79810940471797 54-55 23.845523320180543 26.12254094870412 30.613449910579956 19.418485820535388 56-57 23.610902148919862 23.40555539784824 29.736565702444146 23.24697675078775 58-59 25.588256167144518 26.338249070315385 28.0506074885741 20.022887273965992 60-61 26.39083657421864 28.054368808016577 26.294390666250315 19.260403951514462 62-63 24.557299798450053 24.591861356345984 30.997281914440627 19.853556930763336 64-65 18.65490248956766 29.886663638686233 31.761397507593607 19.697036364152495 66-67 17.827696085389046 28.183105288557076 25.380673914894825 28.608524711159056 68-69 17.16864904760553 32.457312572742495 24.620709966786837 25.753328412865134 70-71 18.577937377579698 30.434077554148807 29.077447696369262 21.910537371902233 72-73 23.122143526272463 29.322217333295487 26.64557725608198 20.91006188435007 74-75 22.54495841258126 32.41434127231953 23.275754392937237 21.764945922161978 76-77 28.12526613109263 27.51156783149289 25.050671360036336 19.312494677378147 78-79 19.015740767025292 28.067391489482503 31.274342123939025 21.642525619553183 80-81 15.971981718568143 27.76936014988503 31.92533426065234 24.333323870894485 82-83 17.98989411530928 25.88291651290204 32.95142930138814 23.175760070400546 84-85 15.843990405087007 25.052658472194622 30.82947738950237 28.273873733216 86 17.75009225877878 25.647727595310414 31.914724501092913 24.687455644817895 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1155.0 1 1123.0 2 3338.5 3 3464.0 4 1497.5 5 1783.0 6 2200.5 7 2488.0 8 2628.0 9 2748.5 10 2646.5 11 2553.0 12 2573.5 13 2644.0 14 2683.0 15 2755.0 16 2977.5 17 3388.0 18 3593.5 19 3472.0 20 3296.0 21 3187.0 22 4021.0 23 4678.0 24 4907.0 25 7077.0 26 9485.5 27 10518.5 28 11429.5 29 11952.0 30 14848.0 31 19851.5 32 21408.5 33 23354.0 34 28400.5 35 31778.5 36 32606.0 37 32283.0 38 33429.0 39 40352.0 40 51086.0 41 63386.5 42 73719.0 43 77031.0 44 76031.5 45 78135.5 46 86490.0 47 92741.0 48 90889.0 49 79100.5 50 70164.0 51 60740.0 52 47081.5 53 41539.5 54 38480.0 55 36779.5 56 35108.5 57 33386.0 58 30816.0 59 23095.5 60 15558.5 61 11453.0 62 9342.5 63 7498.5 64 6046.0 65 4705.5 66 2761.0 67 1764.5 68 1313.0 69 1009.0 70 650.0 71 536.0 72 331.5 73 96.0 74 50.5 75 36.0 76 33.5 77 68.5 78 62.0 79 18.0 80 12.0 81 7.0 82 8.0 83 6.5 84 4.5 85 3.0 86 2.0 87 1.5 88 1.0 89 1.5 90 1.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1409080.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.014995507638274 #Duplication Level Percentage of deduplicated Percentage of total 1 80.40191971526218 12.072344633301547 2 8.649035887208163 2.5973046998366556 3 2.627482289955351 1.1835490434023617 4 1.2112449280903386 0.7274734861570431 5 0.6947029245743936 0.5215480645813846 6 0.5122550064140733 0.46149039720435153 7 0.3518035706573081 0.36976303230934093 8 0.2663458671072099 0.3199345598474222 9 0.21880389905634115 0.29568056052462305 >10 2.136075920241242 7.551850680674306 >50 0.9412459764626369 10.328736244047423 >100 1.972904862695905 61.17753654564497 >500 0.014275722595484118 1.4285707044419493 >1k 0.0014275722595484118 0.35274850294237786 >5k 4.7585741984947056E-4 0.6114688450842353 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8558 0.607346637522355 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2071 0.1469753314219207 No Hit TATAGAGGGACTCTAGGCAGTATTTTTATAGATTATGATTATGTGGCAAT 1588 0.11269764669145825 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04215516507224572 0.0 2 0.0 0.0 0.0 0.1454140290118375 0.0 3 0.0 0.0 0.0 0.20431771084679365 0.0 4 0.0 0.0 0.0 0.30686689187271127 0.0 5 0.0 0.0 0.0 0.5280750560649502 0.0 6 0.0 0.0 0.0 0.6953473188179521 0.0 7 0.0 0.0 0.0 0.8206773213728106 0.0 8 0.0 0.0 0.0 1.0490532829931587 0.0 9 0.0 0.0 0.0 1.1101569818605048 0.0 10 0.0 0.0 0.0 1.2466999744514151 0.0 11 0.0 0.0 0.0 1.4750759360717631 0.0 12 0.0 0.0 0.0 1.6378062281772503 0.0 13 0.0 0.0 0.0 1.6992647685014335 0.0 14 0.0 0.0 0.0 1.724174638771397 0.0 15 0.0 0.0 0.0 1.7649814063076616 0.0 16 0.0 0.0 0.0 1.8611434411105119 0.0 17 0.0 0.0 0.0 1.9727055951400914 0.0 18 0.0 0.0 0.0 2.106196951202203 0.0 19 0.0 0.0 0.0 2.190933091094899 0.0 20 0.0 0.0 0.0 2.285178982030829 0.0 21 0.0 0.0 0.0 2.4206574502512277 0.0 22 0.0 0.0 0.0 2.561742413489653 0.0 23 0.0 0.0 0.0 2.7038209328072216 0.0 24 0.0 0.0 0.0 2.81871859653107 0.0 25 0.0 0.0 0.0 2.9147386947511853 0.0 26 0.0 0.0 0.0 3.0075652198597664 0.0 27 0.0 0.0 0.0 3.106707922900048 0.0 28 0.0 0.0 0.0 3.211670025832458 0.0 29 0.0 0.0 0.0 3.343742016067221 0.0 30 0.0 0.0 0.0 3.505194878928095 0.0 31 0.0 0.0 0.0 3.640176569108922 0.0 32 0.0 0.0 0.0 3.7599000766457547 0.0 33 0.0 0.0 0.0 3.884733301161041 0.0 34 0.0 0.0 0.0 4.016805291395804 0.0 35 0.0 0.0 0.0 4.185354983393419 0.0 36 0.0 0.0 0.0 4.321259261362023 0.0 37 0.0 0.0 0.0 4.474621739007012 0.0 38 0.0 0.0 0.0 4.623371277713118 0.0 39 0.0 0.0 0.0 4.855863400232776 0.0 40 0.0 0.0 0.0 5.01951628012604 0.0 41 0.0 0.0 0.0 5.185369177051693 0.0 42 0.0 0.0 0.0 5.350725295937775 0.0 43 0.0 0.0 0.0 5.501107105345332 0.0 44 0.0 0.0 0.0 5.663766429159452 0.0 45 0.0 0.0 0.0 5.823019274987935 0.0 46 0.0 0.0 0.0 5.993627047435206 0.0 47 0.0 0.0 0.0 6.164944502796151 0.0 48 0.0 0.0 0.0 6.33392000454197 0.0 49 0.0 0.0 0.0 6.52077951571238 1.4193658273483408E-4 50 0.0 0.0 0.0 6.716155221846879 1.4193658273483408E-4 51 0.0 0.0 0.0 6.897975984330201 1.4193658273483408E-4 52 0.0 0.0 0.0 7.117835750986459 1.4193658273483408E-4 53 0.0 0.0 0.0 7.314205013200103 1.4193658273483408E-4 54 0.0 0.0 0.0 7.525619553183637 1.4193658273483408E-4 55 0.0 0.0 0.0 7.742995429642036 1.4193658273483408E-4 56 0.0 0.0 0.0 7.965764896244358 1.4193658273483408E-4 57 0.0 0.0 0.0 8.16738581201919 1.4193658273483408E-4 58 0.0 0.0 0.0 8.36162602549181 1.4193658273483408E-4 59 0.0 0.0 0.0 8.572543787435773 1.4193658273483408E-4 60 0.0 0.0 0.0 8.813268231754053 1.4193658273483408E-4 61 0.0 0.0 0.0 9.051366849291737 1.4193658273483408E-4 62 0.0 0.0 0.0 9.322252817441168 1.4193658273483408E-4 63 0.0 0.0 0.0 9.621809975303034 1.4193658273483408E-4 64 7.096829136741704E-5 0.0 0.0 9.895250801941692 1.4193658273483408E-4 65 7.096829136741704E-5 0.0 0.0 10.131859085360661 1.4193658273483408E-4 66 7.096829136741704E-5 0.0 0.0 10.363215715218441 1.4193658273483408E-4 67 7.096829136741704E-5 0.0 0.0 10.587404547648111 1.4193658273483408E-4 68 7.096829136741704E-5 0.0 0.0 10.85396145002413 1.4193658273483408E-4 69 1.4193658273483408E-4 0.0 0.0 11.21497714821018 1.4193658273483408E-4 70 1.4193658273483408E-4 0.0 0.0 11.4532177023306 1.4193658273483408E-4 71 1.4193658273483408E-4 0.0 0.0 11.704942231810827 1.4193658273483408E-4 72 2.1290487410225112E-4 0.0 0.0 11.94971186873705 1.4193658273483408E-4 73 2.1290487410225112E-4 0.0 0.0 12.219107502767763 1.4193658273483408E-4 74 2.1290487410225112E-4 0.0 0.0 12.500070968291368 1.4193658273483408E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCGCGT 15 0.0013098526 80.00001 9 CAATACG 15 0.0013098526 80.00001 1 TGCGTAG 120 0.0 80.00001 1 CGTTAGG 140 0.0 77.14285 2 TTCGTAG 75 0.0 74.666664 1 ACGTAGG 275 0.0 72.72727 2 TAGGGCG 175 0.0 70.85715 5 CGAAAGG 390 0.0 70.769226 2 TAGCGGG 740 0.0 70.27027 3 ACGTTAG 120 0.0 70.00001 1 CGTTTTT 4755 0.0 69.400635 1 TAGGGTC 375 0.0 69.333336 5 TACGTAG 185 0.0 69.18919 1 ATTAGCG 60 0.0 66.66667 1 AGCGGGA 955 0.0 65.34031 4 GTAAGGG 1925 0.0 64.83117 3 TAGGGAC 1350 0.0 64.59259 5 GGCGATT 310 0.0 64.51613 8 AAGTACT 4435 0.0 64.03607 80 GCCGATC 25 1.2356229E-4 64.00001 9 >>END_MODULE