##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547758_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 924185 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.814752457570723 31.0 31.0 33.0 30.0 34.0 2 32.23751629814377 33.0 31.0 34.0 31.0 34.0 3 32.384443590839496 34.0 31.0 34.0 31.0 34.0 4 35.990348252784884 37.0 35.0 37.0 35.0 37.0 5 35.927053566115006 37.0 35.0 37.0 35.0 37.0 6 35.97430709219474 37.0 35.0 37.0 35.0 37.0 7 36.23812548353414 37.0 35.0 37.0 35.0 37.0 8 36.20345493597061 37.0 36.0 37.0 35.0 37.0 9 38.136245448692634 39.0 39.0 39.0 37.0 39.0 10-11 37.54265271563594 39.0 37.5 39.0 35.0 39.0 12-13 36.04131802615277 37.0 35.0 39.0 32.5 39.0 14-15 36.82540400460947 38.0 35.0 41.0 32.5 41.0 16-17 37.20144235191006 38.0 35.0 41.0 33.0 41.0 18-19 37.10190816773698 37.5 35.0 41.0 33.0 41.0 20-21 36.807216087688076 37.0 35.0 41.0 33.0 41.0 22-23 36.58685544560883 36.5 35.0 41.0 33.0 41.0 24-25 36.52300621628787 36.0 35.0 40.5 33.0 41.0 26-27 36.475729426467645 36.0 35.0 40.0 33.0 41.0 28-29 36.54241304500722 36.0 35.0 40.0 33.0 41.0 30-31 36.3903433836299 36.0 35.0 40.0 32.5 41.0 32-33 35.915565065436034 36.0 35.0 40.0 31.5 41.0 34-35 35.59390706406185 35.5 35.0 40.0 30.0 41.0 36-37 35.32214112975216 35.0 35.0 40.0 30.0 41.0 38-39 35.29881246720083 35.5 35.0 40.0 30.0 41.0 40-41 35.17803740593063 36.0 35.0 40.0 29.0 41.0 42-43 35.13032293317896 35.5 35.0 40.0 29.0 41.0 44-45 34.96528400698995 35.0 34.0 40.0 29.0 41.0 46-47 34.882670136390445 35.0 34.0 40.0 28.0 41.0 48-49 34.83751521610933 35.5 34.5 40.0 28.0 41.0 50-51 34.63081363579803 35.0 34.0 40.0 27.5 41.0 52-53 34.45608292711957 35.0 34.0 39.5 27.0 41.0 54-55 34.294720212944384 35.0 34.0 39.0 26.5 41.0 56-57 33.98150153919399 35.0 34.0 39.0 25.5 41.0 58-59 33.684841779513846 35.0 34.0 38.5 25.0 40.5 60-61 33.405060134064065 35.0 33.0 37.5 25.0 40.0 62-63 32.94970325205451 35.0 32.5 37.0 23.5 40.0 64-65 32.7221395067005 35.0 32.5 36.5 23.0 40.0 66-67 32.51988941608011 35.0 33.0 36.0 22.5 39.0 68-69 32.29701033883909 35.0 33.0 36.0 21.0 39.0 70-71 32.101346050844796 35.0 33.0 35.0 20.0 38.5 72-73 31.87785832923062 35.0 32.5 35.0 20.0 37.5 74-75 31.615486076921826 35.0 32.0 35.0 19.0 37.0 76-77 29.58431861586154 32.5 28.5 34.5 16.0 35.5 78-79 30.548423205310627 34.0 30.5 35.0 17.0 36.0 80-81 31.076504163127513 34.5 31.5 35.0 18.0 36.0 82-83 31.003990543018986 34.5 31.5 35.0 18.0 36.0 84-85 30.86505623874008 34.5 31.5 35.0 17.5 35.5 86 30.496674367145108 34.0 31.0 35.0 15.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 4.0 11 5.0 12 19.0 13 44.0 14 160.0 15 549.0 16 1384.0 17 3060.0 18 5953.0 19 8616.0 20 9894.0 21 10045.0 22 8271.0 23 6980.0 24 7342.0 25 8303.0 26 9879.0 27 12183.0 28 14861.0 29 18456.0 30 22896.0 31 28171.0 32 35144.0 33 50352.0 34 157608.0 35 136959.0 36 61988.0 37 105643.0 38 137305.0 39 61864.0 40 245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.151014136779974 23.940336620914643 29.1375644486764 15.771084793628981 2 28.604770689851055 26.547173996548313 32.58081444732386 12.267240866276774 3 26.80902633130813 24.12395786557886 34.459442644059365 14.607573159053652 4 25.28465621060718 26.993621406969382 32.89601108003268 14.825711302390754 5 23.251513495674565 31.878357688125213 32.328375812202104 12.541753003998119 6 21.244988827994398 39.045970233232524 28.805163468353197 10.903877470419882 7 87.46820171286052 3.5053587755698263 7.751045515778768 1.275393995790886 8 88.63192975432408 2.9134859362573513 6.821686134269654 1.632898175148915 9 86.25253601822146 4.216688217185953 7.6743292739007885 1.8564464906917988 10-11 51.722707033764884 21.46550744710204 16.52493818878255 10.286847330350525 12-13 34.288751710966956 31.65129276064857 21.61125748632579 12.448698042058679 14-15 11.219831527237512 37.39094445376197 38.79969919442536 12.589524824575166 16-17 14.185201014948307 21.196892397084998 41.05217029058035 23.565736297386348 18-19 22.335679544679905 25.182890871416436 33.2309548412926 19.250474742611058 20-21 25.178184021597406 27.257637810611513 30.38298609044726 17.18119207734382 22-23 18.746841811974875 25.029133777328134 30.02256041809811 26.20146399259888 24-25 15.075120241077272 24.12720396890233 42.61911846654079 18.17855732347961 26-27 12.944864935050882 39.397956036940656 30.56325302834389 17.09392599966457 28-29 11.623646780677028 29.364575274430987 41.94836531646802 17.06341262842396 30-31 21.327818564464906 31.494181359792684 31.32922520923841 15.848774866504002 32-33 28.05082315770111 30.226253401645774 26.98042058678728 14.742502853865838 34-35 17.363190270346305 30.863463484042697 29.06679939622478 22.706546849386218 36-37 23.821475137553627 29.02773795289904 31.845463841114064 15.30532306843327 38-39 16.837970752609056 32.95022100553461 29.75848991273392 20.453318329122418 40-41 19.41045353473601 25.521838160108633 29.232621174331978 25.835087130823375 42-43 21.25548456207361 23.59873834784161 29.13096403858535 26.01481305149943 44-45 16.74285992523142 35.93788040273322 27.318502247926553 20.00075742410881 46-47 21.024957124385267 33.779275794348536 25.980783068325064 19.214984012941134 48-49 21.775943128269773 25.952866579743233 33.07984873158512 19.191341560401867 50-51 18.27420916807782 34.34404367091005 27.501420170204018 19.88032699080812 52-53 23.382385561332416 26.66289758002997 30.425077230208235 19.529639628429372 54-55 24.4060442443883 26.777755535958708 31.327277547244332 17.488922672408663 56-57 25.063975286333363 22.194257643220784 29.54998187592311 23.19178519452274 58-59 26.003884503643746 25.486726142493115 28.36261138192029 20.146777971942846 60-61 25.814744883329638 29.105482127496117 26.688000779064797 18.391772210109448 62-63 23.63098297418807 24.617095062135828 34.04129043427452 17.71063152940158 64-65 16.91603953753848 31.656432424244063 33.15483371835726 18.2726943198602 66-67 14.68477631643015 28.762152599317236 24.56710507095441 31.985966013298206 68-69 15.016690381254834 35.69025682087461 21.781082791865263 27.511970006005292 70-71 17.700893219431173 30.545669968675103 28.84920227010826 22.904234541785463 72-73 23.987513322549056 30.136174034419515 26.01951990131846 19.85679274171297 74-75 22.57708142850187 35.05613053663498 21.424390138338104 20.942397896525048 76-77 32.050996283211695 28.066025741599354 23.199413537332894 16.683564437856056 78-79 18.012248629873888 30.19503670801842 31.607632670947915 20.185081991159777 80-81 13.18935061703014 29.72262047100959 34.84064337767871 22.247385534281555 82-83 17.709008477739847 23.853178746679507 36.693194544382344 21.7446182311983 84-85 14.287182761027283 24.67417237890682 33.147313578991216 27.891331281074677 86 16.683672641300173 24.133587972105154 34.73384657833659 24.448892808258087 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2068.0 1 1721.0 2 2823.0 3 2762.0 4 1382.5 5 1869.5 6 2496.0 7 2766.0 8 2652.5 9 2637.0 10 2538.0 11 2450.0 12 2478.5 13 2477.5 14 2557.0 15 2614.5 16 2632.5 17 2764.0 18 2946.0 19 3037.5 20 3112.5 21 3107.0 22 3727.5 23 3931.0 24 4122.5 25 5093.0 26 5771.5 27 7175.0 28 8892.5 29 9523.0 30 11993.0 31 14931.0 32 15390.5 33 15834.5 34 15533.5 35 17122.5 36 19465.0 37 19035.5 38 20629.5 39 25768.0 40 34907.0 41 46218.0 42 55090.0 43 58675.0 44 62435.5 45 64033.5 46 65986.5 47 70745.5 48 66976.0 49 52115.5 50 41668.0 51 34029.0 52 22981.5 53 18643.0 54 16402.0 55 15642.0 56 16079.5 57 15966.0 58 13734.5 59 9152.5 60 5492.0 61 3921.5 62 3149.5 63 2052.5 64 1467.0 65 1343.0 66 821.5 67 283.0 68 127.5 69 142.5 70 114.5 71 57.0 72 36.0 73 16.5 74 21.0 75 43.0 76 34.0 77 7.5 78 6.5 79 4.0 80 5.0 81 6.5 82 6.0 83 3.5 84 1.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 924185.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.185059554766408 #Duplication Level Percentage of deduplicated Percentage of total 1 81.41195765329806 13.176573830887502 2 8.52212573379706 2.758622250694256 3 2.475075439149976 1.2017773015554596 4 1.1615150276134272 0.7519675958271788 5 0.6894461110167476 0.5579363183304077 6 0.45251129357310554 0.439435334141106 7 0.3418998308694748 0.38735683870709087 8 0.26295218665375597 0.34047174408376746 9 0.20774450694025287 0.3026121495303219 >10 1.9150826346003624 6.759075623533454 >50 0.7165517581228958 8.632798301799175 >100 1.8229722026541213 61.52383745499493 >500 0.016132497368620543 1.6255988938309172 >1k 0.003360936951795947 0.8414122503606153 >5k 6.721873903591894E-4 0.7005241117238171 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6439 0.696721976660517 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2623 0.2838176339152875 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1825 0.1974712855110178 No Hit GTCTATGGGGGCCATATACTGCATTCAACTCTGATCCCCTTCTACCTACT 1149 0.1243257572888545 No Hit GTTTTGGTTGGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCA 1091 0.11804995753014819 No Hit GGGCAAGGGAAATACGATGAACTTAAAAAATCAGAAAAGGGAAGTAAACA 1046 0.113180802544945 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07314552822216332 0.0 2 0.0 0.0 0.0 0.23977883216022766 0.0 3 0.0 0.0 0.0 0.32958769077619743 0.0 4 0.0 0.0 0.0 0.49795224982011177 0.0 5 0.0 0.0 0.0 0.7973511796880495 0.0 6 0.0 0.0 0.0 1.061475786774293 0.0 7 0.0 0.0 0.0 1.2098227086568165 0.0 8 0.0 0.0 0.0 1.4854168808193164 0.0 9 0.0 0.0 0.0 1.5761995704323268 0.0 10 0.0 0.0 0.0 1.7537614222260696 0.0 11 0.0 0.0 0.0 2.089624912760973 0.0 12 0.0 0.0 0.0 2.3020282735599475 0.0 13 0.0 0.0 0.0 2.3813413980967013 0.0 14 0.0 0.0 0.0 2.4132614141108113 0.0 15 0.0 0.0 0.0 2.468012356833318 0.0 16 0.0 0.0 0.0 2.6015354068720007 0.0 17 0.0 0.0 0.0 2.747069039207518 0.0 18 0.0 0.0 0.0 2.9191125153513635 0.0 19 0.0 0.0 0.0 3.0219057872612085 0.0 20 0.0 0.0 0.0 3.1264303142769037 0.0 21 0.0 0.0 0.0 3.297067145647246 0.0 22 0.0 0.0 0.0 3.4590477014883385 0.0 23 0.0 0.0 0.0 3.636068536061503 0.0 24 0.0 0.0 0.0 3.7473016766123664 0.0 25 0.0 0.0 0.0 3.858102003386768 0.0 26 0.0 0.0 0.0 3.9648988027288907 0.0 27 0.0 0.0 0.0 4.061091664547683 0.0 28 0.0 0.0 0.0 4.164858767454568 0.0 29 0.0 0.0 0.0 4.291348593625735 0.0 30 0.0 0.0 0.0 4.445322094602271 0.0 31 0.0 0.0 0.0 4.598213561137651 0.0 32 0.0 0.0 0.0 4.731520204288103 0.0 33 0.0 0.0 0.0 4.846432261938897 0.0 34 0.0 0.0 0.0 4.984499856630436 0.0 35 0.0 0.0 0.0 5.154595670780201 0.0 36 0.0 0.0 0.0 5.3068379166508866 0.0 37 0.0 0.0 0.0 5.450423886992323 0.0 38 0.0 0.0 0.0 5.59249500911614 0.0 39 0.0 0.0 0.0 5.742140372328051 0.0 40 0.0 0.0 0.0 5.900442011069212 0.0 41 0.0 0.0 0.0 6.065668670233774 0.0 42 0.0 0.0 0.0 6.239659808371701 0.0 43 0.0 0.0 0.0 6.397095819559937 0.0 44 0.0 0.0 0.0 6.558859968512798 0.0 45 0.0 0.0 0.0 6.743779654506403 0.0 46 0.0 0.0 0.0 6.946769315667318 0.0 47 0.0 0.0 0.0 7.124547574349291 0.0 48 0.0 0.0 0.0 7.314985635992794 0.0 49 0.0 0.0 0.0 7.522952655583027 0.0 50 0.0 0.0 0.0 7.7314606923938385 0.0 51 0.0 0.0 0.0 7.9307714364548225 0.0 52 0.0 0.0 0.0 8.13495133550101 0.0 53 0.0 0.0 0.0 8.362935992252634 0.0 54 0.0 0.0 0.0 8.591894480001299 0.0 55 0.0 0.0 0.0 8.827236970952786 0.0 56 0.0 0.0 0.0 9.066258379004204 0.0 57 0.0 0.0 0.0 9.304197752614465 0.0 58 0.0 0.0 0.0 9.52374254072507 0.0 59 0.0 0.0 0.0 9.741123259953364 0.0 60 0.0 0.0 0.0 9.974626292354886 0.0 61 0.0 0.0 0.0 10.198282811341885 0.0 62 0.0 0.0 0.0 10.451803480904797 0.0 63 1.082034441156262E-4 0.0 0.0 10.80552053971878 0.0 64 1.082034441156262E-4 0.0 0.0 11.110870659013077 0.0 65 1.082034441156262E-4 0.0 0.0 11.355518646158508 0.0 66 1.082034441156262E-4 0.0 0.0 11.58826425445122 0.0 67 1.082034441156262E-4 0.0 0.0 11.83366966570546 0.0 68 2.164068882312524E-4 0.0 0.0 12.097794272791702 0.0 69 2.164068882312524E-4 0.0 0.0 12.401737747312497 0.0 70 2.164068882312524E-4 0.0 0.0 12.65601584098422 0.0 71 2.164068882312524E-4 0.0 0.0 12.91375644486764 0.0 72 2.164068882312524E-4 0.0 0.0 13.179504103615619 0.0 73 2.164068882312524E-4 0.0 0.0 13.454124444781078 0.0 74 2.164068882312524E-4 0.0 0.0 13.756012053863675 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACAC 20 4.0904753E-5 80.0 8 GGTCGGT 20 4.0904753E-5 80.0 9 ATTACGG 40 4.1836756E-11 80.0 2 TAGCGAG 45 1.8189894E-12 80.0 1 GCGTTCG 25 1.2846049E-6 80.0 80 CCGCTAG 40 4.1836756E-11 80.0 1 TAGCCCG 40 4.1836756E-11 80.0 1 CGTTAAG 20 4.0904753E-5 80.0 8 TACGACT 20 4.0904753E-5 80.0 6 ACTACGG 50 0.0 80.0 2 GTCGTAA 15 0.0013097094 80.0 8 TATTACG 40 4.1836756E-11 80.0 1 GAACGAT 20 4.0904753E-5 80.0 9 TGTAGCG 70 0.0 80.0 1 CGCGTGG 25 1.2846049E-6 80.0 2 CGTCAGG 60 0.0 80.0 2 ATCGCTG 45 1.8189894E-12 80.0 1 CGGGACT 150 0.0 77.33333 6 GGAGCGT 100 0.0 76.0 8 TACGGGA 255 0.0 75.29412 4 >>END_MODULE