##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547754_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3058745 Sequences flagged as poor quality 0 Sequence length 86 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.854208507083786 31.0 31.0 33.0 30.0 34.0 2 32.305167642284665 33.0 31.0 34.0 31.0 34.0 3 32.44906685585101 34.0 31.0 34.0 31.0 34.0 4 36.036651960199364 37.0 35.0 37.0 35.0 37.0 5 35.989415266718865 37.0 35.0 37.0 35.0 37.0 6 36.05184315789646 37.0 35.0 37.0 35.0 37.0 7 36.27243493655077 37.0 35.0 37.0 35.0 37.0 8 36.22363060667038 37.0 36.0 37.0 35.0 37.0 9 38.09008662049305 39.0 39.0 39.0 37.0 39.0 10-11 37.60224945198112 39.0 37.5 39.0 35.0 39.0 12-13 36.86719438854824 39.0 35.0 39.0 33.5 39.0 14-15 37.945194189120045 40.0 35.0 41.0 33.0 41.0 16-17 38.09547772043763 40.0 35.0 41.0 34.0 41.0 18-19 37.96333152976139 40.0 36.0 41.0 34.0 41.0 20-21 37.762426910383184 40.0 35.0 41.0 34.0 41.0 22-23 37.57767875386801 39.0 35.0 41.0 33.0 41.0 24-25 37.491335662175175 39.0 35.0 41.0 33.0 41.0 26-27 37.4651281816562 39.0 35.0 41.0 33.0 41.0 28-29 37.45008393965499 39.0 35.0 41.0 33.0 41.0 30-31 37.28518215804195 39.0 35.0 41.0 33.0 41.0 32-33 36.95355513454048 39.0 35.0 41.0 32.5 41.0 34-35 36.64842737789518 39.0 35.0 41.0 31.5 41.0 36-37 36.43950443727738 39.0 35.0 41.0 31.0 41.0 38-39 36.34990854092119 39.0 35.0 41.0 31.0 41.0 40-41 36.19539418944698 38.5 35.0 41.0 30.0 41.0 42-43 36.14625426441236 38.5 35.0 41.0 30.0 41.0 44-45 36.03796982095598 38.0 35.0 41.0 30.0 41.0 46-47 35.937610686735894 38.0 35.0 41.0 30.0 41.0 48-49 35.82720020792841 38.0 35.0 40.0 30.0 41.0 50-51 35.64787617143632 38.0 35.0 40.0 29.0 41.0 52-53 35.45222207147049 37.5 35.0 40.0 29.0 41.0 54-55 35.28992527981247 37.0 35.0 40.0 28.5 41.0 56-57 35.027138090949066 36.5 34.5 40.0 27.5 41.0 58-59 34.727714634596865 36.0 34.0 40.0 27.0 41.0 60-61 34.40526637558868 36.0 34.0 39.0 26.0 41.0 62-63 34.02977789910568 35.0 33.5 39.0 26.0 41.0 64-65 33.72528389911548 35.0 33.0 39.0 25.0 40.0 66-67 33.437959686080404 35.0 33.0 38.0 25.0 40.0 68-69 33.0238568432478 35.0 33.0 37.0 23.0 40.0 70-71 32.73065799862362 35.0 33.0 37.0 23.0 39.0 72-73 32.459592087604555 35.0 33.0 36.0 22.0 39.0 74-75 32.158969119687974 35.0 32.5 36.0 20.5 38.5 76-77 30.10039297162725 33.0 29.5 34.5 18.5 36.0 78-79 31.187736473619083 34.0 31.0 35.0 19.0 37.0 80-81 31.389585598014875 35.0 32.0 35.0 19.0 36.5 82-83 31.200911158007614 35.0 32.0 35.0 18.0 36.0 84-85 30.99502426648838 35.0 32.0 35.0 17.5 36.0 86 30.566983190818455 34.0 31.0 35.0 15.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 10.0 9 17.0 10 33.0 11 56.0 12 84.0 13 166.0 14 469.0 15 1336.0 16 3478.0 17 8039.0 18 17033.0 19 24979.0 20 28217.0 21 26931.0 22 23018.0 23 20082.0 24 20212.0 25 22649.0 26 26554.0 27 32906.0 28 41152.0 29 51689.0 30 65301.0 31 82538.0 32 103827.0 33 140591.0 34 348399.0 35 325913.0 36 260621.0 37 441691.0 38 623418.0 39 316044.0 40 1290.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.808862785227277 22.459145826147655 30.924088147263014 14.80790324136206 2 31.82860944603097 25.214164632880482 29.723726561056907 13.233499360031647 3 28.87390089726342 24.24425704006055 33.01530529678022 13.866536765895818 4 26.39170640246245 26.410047257944026 32.48172044416909 14.716525895424432 5 23.693639057848888 31.199266365780737 31.312319268196596 13.794775308173776 6 22.2750180220973 39.33276556234665 27.913049306169686 10.479167109386365 7 85.77367515108321 4.591360182035443 7.681418359490576 1.9535463073907762 8 86.38340234311784 4.11521718874898 7.463028137356988 2.0383523307761844 9 81.98104124403963 6.317721810742641 8.790533372347156 2.9107035728705726 10-11 40.00457704058364 26.24842868562106 21.211101285004144 12.535892988791156 12-13 29.161715017106687 26.783272224392686 27.78816148453042 16.266851273970207 14-15 16.794910984733935 32.123452592484824 35.265672686019926 15.815963736761319 16-17 20.375202901843732 25.35412399529873 33.71498768285686 20.555685420000685 18-19 23.56762332263723 28.03903234823433 30.633691268804693 17.75965306032376 20-21 25.20515767087482 28.075092889403987 29.878937276562773 16.840812163158418 22-23 21.05219624388434 26.020230519379677 30.82228168742409 22.105291549311893 24-25 19.405802052802702 27.152116309139863 34.42872812215467 19.013353515902764 26-27 17.752869232315867 34.03467762105046 29.945696682789837 18.26675646384383 28-29 16.75327626199634 29.04084845255162 35.79935561807211 18.40651966737992 30-31 21.227431511943625 29.681356242511225 31.168077103517945 17.923135142027206 32-33 24.016712736759686 29.127942996228846 29.25049325785575 17.604851009155716 34-35 19.441584702222645 30.173747729869604 29.965214491564353 20.4194530763434 36-37 22.60523515363327 30.03387010031892 29.438805784725435 17.922088961322373 38-39 19.688695854018558 31.388837578810918 28.82582562456171 20.096640942608815 40-41 20.504324486022863 28.278951007684523 29.270566850129708 21.946157656162903 42-43 20.79584927805358 27.600470127454237 29.235290944488675 22.368389650003515 44-45 19.24032568913067 32.26305233028579 28.19479884723964 20.301823133343905 46-47 20.908330050396486 31.73657823715282 27.923805351541237 19.431286360909457 48-49 21.24153860488534 27.679048106331187 30.79622524924438 20.28318803953909 50-51 19.0386907048479 31.846361824866083 28.25516674322312 20.859780727062898 52-53 21.608143209061232 27.642709673411808 30.185778807975165 20.563368309551795 54-55 20.735563114937662 28.428816393651644 31.06350807275533 19.772112418655365 56-57 21.740664880531067 26.965634598503634 29.6298645359453 21.66383598502 58-59 22.247212500551697 28.68777881124448 28.533172918958595 20.53183576924523 60-61 22.79928532780601 30.286375621374123 27.59635079092896 19.317988259890903 62-63 22.608700627218028 27.304891385192292 30.792923241394753 19.293484746194927 64-65 19.147477151576872 31.559479459713053 29.824519533338016 19.468523855372055 66-67 18.767631822855453 30.207356285012317 26.595842412492704 24.429169479639526 68-69 17.996482217380002 32.65953847084344 26.094198764525974 23.249780547250587 70-71 19.388000634247053 30.024209275372744 29.521928111039003 21.0658619793412 72-73 21.773962850777036 30.188443299457784 27.63711914527037 20.400474704494815 74-75 20.08006551706664 32.19948050589376 26.243246821817444 21.477207155222157 76-77 24.00456723263953 29.147656963885517 27.06892859653224 19.778847206942718 78-79 19.239851638498795 30.516143058672757 29.529774466325243 20.714230836503205 80-81 17.196562642521688 29.588671170692553 30.749555781864785 22.465210404920974 82-83 18.653696205469892 28.744926432245904 30.94439059156615 21.656986770718056 84-85 17.07569607796662 28.298991906811455 30.44812496628519 24.177187048936737 86 18.283544394841673 28.215558995601135 31.095367544532156 22.405529065025036 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2004.0 1 2639.0 2 8080.5 3 8292.0 4 4252.0 5 5777.5 6 7574.5 7 8401.0 8 9062.5 9 9083.5 10 8195.0 11 7661.0 12 7407.0 13 7598.0 14 7757.0 15 8332.5 16 8853.0 17 8596.5 18 9277.0 19 11088.0 20 12074.5 21 12132.0 22 13437.0 23 13975.0 24 15763.0 25 19210.0 26 23792.5 27 29584.0 28 35074.5 29 38464.0 30 42476.5 31 54107.0 32 61667.0 33 63600.5 34 69689.0 35 78794.0 36 83802.0 37 84610.5 38 89041.0 39 100465.0 40 117502.0 41 138210.0 42 156396.0 43 163109.0 44 171584.5 45 175251.5 46 172901.0 47 175257.0 48 170988.0 49 148399.0 50 129977.0 51 113722.5 52 95382.0 53 85179.5 54 72761.0 55 65345.0 56 61898.0 57 61565.0 58 52921.5 59 38077.5 60 27448.0 61 21741.0 62 19293.5 63 15141.5 64 12159.0 65 9016.5 66 4547.5 67 3097.0 68 2513.5 69 1636.0 70 862.0 71 506.0 72 472.5 73 380.0 74 217.5 75 95.0 76 86.5 77 91.0 78 61.0 79 37.0 80 34.5 81 26.5 82 18.5 83 16.5 84 12.5 85 6.0 86 4.0 87 4.0 88 3.0 89 2.0 90 3.0 91 2.0 92 1.0 93 2.0 94 2.0 95 1.5 96 0.5 97 1.0 98 1.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 3058745.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.400149724342626 #Duplication Level Percentage of deduplicated Percentage of total 1 78.42034020953663 12.861053208702872 2 9.476127113385825 3.1081980693286044 3 3.132536051650913 1.5412218079192819 4 1.4598510946495062 0.9576710610998953 5 0.8520230355923993 0.6986652676152127 6 0.5930766190272467 0.5835927210032255 7 0.4447931412329907 0.5106271878807207 8 0.3635470354098751 0.4769780650050274 9 0.3023219378674592 0.4462312541381766 >10 2.5981654563456402 9.319765607717967 >50 0.7876507972521102 9.399297099764896 >100 1.5379546682597582 55.80336035602467 >500 0.02839114911042169 2.7837417429983704 >1k 0.003020335011746988 0.8340195670261079 >5k 0.0 0.0 >10k+ 2.0135566744979922E-4 0.6755769837749491 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20458 0.6688364018576246 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4699 0.15362509787510892 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.538629405197229E-5 0.0 0.0 0.041193365252742545 0.0 2 6.538629405197229E-5 0.0 0.0 0.1600329546922022 0.0 3 6.538629405197229E-5 0.0 0.0 0.23565220376330814 0.0 4 6.538629405197229E-5 0.0 0.0 0.34229724936207495 0.0 5 6.538629405197229E-5 0.0 0.0 0.5789302475361627 0.0 6 6.538629405197229E-5 0.0 0.0 0.7688774317571422 0.0 7 6.538629405197229E-5 0.0 0.0 0.8999442581843207 0.0 8 6.538629405197229E-5 0.0 0.0 1.14707175655375 0.0 9 6.538629405197229E-5 0.0 0.0 1.2346566974363669 0.0 10 6.538629405197229E-5 0.0 0.0 1.4166594469300318 0.0 11 6.538629405197229E-5 0.0 0.0 1.7543469625614427 0.0 12 6.538629405197229E-5 0.0 0.0 1.9914703579409203 0.0 13 6.538629405197229E-5 0.0 0.0 2.0797745480581087 0.0 14 6.538629405197229E-5 0.0 0.0 2.1154100783164336 0.0 15 6.538629405197229E-5 0.0 0.0 2.1754673894031704 0.0 16 6.538629405197229E-5 0.0 0.0 2.3146094231457672 0.0 17 6.538629405197229E-5 0.0 0.0 2.494487118082743 0.0 18 6.538629405197229E-5 0.0 0.0 2.698361582936793 0.0 19 6.538629405197229E-5 0.0 0.0 2.8353131758286487 0.0 20 6.538629405197229E-5 0.0 0.0 2.971349360603777 0.0 21 6.538629405197229E-5 0.0 0.0 3.1654812676440827 0.0 22 6.538629405197229E-5 0.0 0.0 3.3701076748797303 0.0 23 6.538629405197229E-5 0.0 0.0 3.5918325980099683 0.0 24 6.538629405197229E-5 0.0 0.0 3.751080917173547 0.0 25 6.538629405197229E-5 0.0 0.0 3.897219284379705 0.0 26 6.538629405197229E-5 0.0 0.0 4.035707455181782 0.0 27 6.538629405197229E-5 0.0 0.0 4.1814208114766025 0.0 28 6.538629405197229E-5 0.0 0.0 4.339655643082375 0.0 29 6.538629405197229E-5 0.0 0.0 4.513092788055232 0.0 30 6.538629405197229E-5 0.0 0.0 4.691662757111168 0.0 31 6.538629405197229E-5 0.0 0.0 4.880596453774342 0.0 32 6.538629405197229E-5 0.0 0.0 5.047462276194976 0.0 33 6.538629405197229E-5 0.0 0.0 5.225084143987158 0.0 34 6.538629405197229E-5 0.0 0.0 5.39570967831578 0.0 35 6.538629405197229E-5 0.0 0.0 5.6009899484919465 0.0 36 6.538629405197229E-5 0.0 0.0 5.780213780488403 0.0 37 6.538629405197229E-5 0.0 0.0 5.982780519461413 0.0 38 6.538629405197229E-5 0.0 0.0 6.194337873866569 0.0 39 6.538629405197229E-5 0.0 0.0 6.446565503172053 0.0 40 6.538629405197229E-5 0.0 0.0 6.665511508805082 0.0 41 6.538629405197229E-5 0.0 0.0 6.890799984961152 0.0 42 6.538629405197229E-5 0.0 0.0 7.117232721263132 0.0 43 6.538629405197229E-5 0.0 0.0 7.328528530492081 0.0 44 6.538629405197229E-5 0.0 0.0 7.533808800668248 0.0 45 6.538629405197229E-5 0.0 0.0 7.754651008828785 0.0 46 6.538629405197229E-5 0.0 0.0 7.989714735945625 0.0 47 6.538629405197229E-5 0.0 0.0 8.231742103379 0.0 48 6.538629405197229E-5 0.0 0.0 8.471023246462194 0.0 49 9.807944107795844E-5 0.0 0.0 8.727500984881054 0.0 50 9.807944107795844E-5 0.0 0.0 8.989863489764593 0.0 51 9.807944107795844E-5 0.0 0.0 9.256345331173407 0.0 52 9.807944107795844E-5 0.0 0.0 9.518119359410477 0.0 53 9.807944107795844E-5 0.0 0.0 9.774531711535287 0.0 54 9.807944107795844E-5 0.0 0.0 10.038855805240384 0.0 55 9.807944107795844E-5 0.0 0.0 10.295235464218168 0.0 56 9.807944107795844E-5 0.0 0.0 10.549522761786289 0.0 57 9.807944107795844E-5 0.0 0.0 10.815546899136738 0.0 58 9.807944107795844E-5 0.0 0.0 11.067741835295195 0.0 59 1.3077258810394459E-4 0.0 0.0 11.343639303047492 0.0 60 1.3077258810394459E-4 0.0 0.0 11.639512283632666 0.0 61 1.3077258810394459E-4 0.0 0.0 11.927538908931604 0.0 62 1.3077258810394459E-4 0.0 0.0 12.238973827501148 0.0 63 1.3077258810394459E-4 0.0 0.0 12.558418567092058 0.0 64 1.3077258810394459E-4 0.0 0.0 12.869493861044317 0.0 65 1.3077258810394459E-4 0.0 0.0 13.167949600244544 0.0 66 1.3077258810394459E-4 0.0 0.0 13.443912454290894 0.0 67 1.3077258810394459E-4 0.0 0.0 13.728964003210468 0.0 68 1.3077258810394459E-4 0.0 0.0 14.029773648996565 0.0 69 1.3077258810394459E-4 0.0 0.0 14.411400754230902 0.0 70 1.3077258810394459E-4 0.0 0.0 14.710346890636519 0.0 71 1.3077258810394459E-4 0.0 0.0 15.024070329497881 0.0 72 1.6346573512993073E-4 0.0 0.0 15.331778229306464 0.0 73 1.6346573512993073E-4 0.0 0.0 15.648051733635853 0.0 74 1.6346573512993073E-4 0.0 0.0 15.981750685330095 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATACCGG 110 0.0 72.72727 2 CGAGGGA 1735 0.0 72.161385 4 TACGCGG 145 0.0 71.724144 2 CGAACGG 95 0.0 71.57895 2 GCGAACG 40 3.7161954E-9 70.0 1 TCGATAG 185 0.0 69.189186 1 CGTTTTT 11350 0.0 69.11013 1 AGTACGG 255 0.0 69.01961 2 TACGGGA 1045 0.0 68.13397 4 GTTAGCG 130 0.0 67.69231 1 GGGCGAT 1970 0.0 67.41117 7 GCGATAT 325 0.0 65.23077 9 CGATAGG 540 0.0 64.44444 2 TAGGGCG 420 0.0 63.80952 5 TAGGGAC 2015 0.0 63.32506 5 AGGGCGA 1020 0.0 63.137257 6 TAGCGGG 1510 0.0 62.251656 3 GGCGATT 600 0.0 60.666668 8 TCTAGCG 225 0.0 60.444443 1 CTTGCGG 450 0.0 60.444443 2 >>END_MODULE