##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547751_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1079825 Sequences flagged as poor quality 0 Sequence length 86 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.824107610029404 31.0 31.0 33.0 30.0 34.0 2 32.27219873590628 33.0 31.0 34.0 31.0 34.0 3 32.41436899497604 34.0 31.0 34.0 31.0 34.0 4 35.99330169240386 37.0 35.0 37.0 35.0 37.0 5 35.95341837797791 37.0 35.0 37.0 35.0 37.0 6 36.02447618827125 37.0 35.0 37.0 35.0 37.0 7 36.25142870372514 37.0 35.0 37.0 35.0 37.0 8 36.208600467668376 37.0 36.0 37.0 35.0 37.0 9 38.102306392239484 39.0 39.0 39.0 37.0 39.0 10-11 37.543940916352184 39.0 37.5 39.0 35.0 39.0 12-13 36.400268562035514 38.0 35.0 39.0 33.0 39.0 14-15 37.33031185608779 39.0 35.0 41.0 33.0 41.0 16-17 37.60915657629708 39.0 35.0 41.0 33.5 41.0 18-19 37.51987868404603 39.0 35.0 41.0 33.5 41.0 20-21 37.29243766351029 39.0 35.0 41.0 33.0 41.0 22-23 37.079391568078165 38.5 35.0 41.0 33.0 41.0 24-25 37.02853749450142 38.0 35.0 41.0 33.0 41.0 26-27 36.99910309540898 38.0 35.0 41.0 33.0 41.0 28-29 37.036260968212446 38.0 35.0 41.0 33.0 41.0 30-31 36.88760308383303 38.0 35.0 41.0 32.5 41.0 32-33 36.53281550251198 38.0 35.0 41.0 31.5 41.0 34-35 36.26113536915704 38.0 35.0 41.0 31.0 41.0 36-37 36.02821614613479 38.0 35.0 41.0 30.0 41.0 38-39 35.95426157016183 38.0 35.0 40.5 30.0 41.0 40-41 35.83998101544232 38.0 35.0 40.0 30.0 41.0 42-43 35.79636191049475 38.0 35.0 40.0 30.0 41.0 44-45 35.70321348366633 37.0 35.0 40.0 30.0 41.0 46-47 35.620368578241845 37.0 35.0 40.0 30.0 41.0 48-49 35.534876484615566 37.0 35.0 40.0 29.5 41.0 50-51 35.36039173014146 36.0 35.0 40.0 29.0 41.0 52-53 35.208940337554694 36.0 34.5 40.0 29.0 41.0 54-55 35.06013705924571 36.0 34.0 40.0 29.0 41.0 56-57 34.75846456601764 35.5 34.0 40.0 27.5 41.0 58-59 34.49297849188526 35.0 34.0 39.0 27.0 41.0 60-61 34.238692380709836 35.0 34.0 39.0 26.5 41.0 62-63 33.8389521450235 35.0 33.5 39.0 26.0 40.0 64-65 33.60473085916699 35.0 33.0 38.0 26.0 40.0 66-67 33.39468756511472 35.0 33.0 37.0 25.0 40.0 68-69 33.099358692380704 35.0 33.0 37.0 25.0 39.5 70-71 32.8937188896349 35.0 33.0 36.0 25.0 39.0 72-73 32.65437362535596 35.0 33.0 36.0 24.5 39.0 74-75 32.39582617553771 35.0 33.0 35.5 24.0 38.0 76-77 30.34379830065057 33.0 29.5 34.5 19.5 36.0 78-79 31.393568402287407 34.0 31.5 35.0 21.0 36.5 80-81 31.778302502720347 35.0 32.0 35.0 23.0 36.0 82-83 31.684085384205773 35.0 32.0 35.0 22.5 36.0 84-85 31.523058365938926 35.0 32.0 35.0 20.5 36.0 86 31.132567777186118 34.0 31.0 35.0 20.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 6.0 10 11.0 11 19.0 12 22.0 13 55.0 14 183.0 15 488.0 16 1209.0 17 2404.0 18 5017.0 19 7571.0 20 9229.0 21 9178.0 22 8274.0 23 7312.0 24 7632.0 25 8303.0 26 9826.0 27 12232.0 28 15128.0 29 18659.0 30 23348.0 31 29870.0 32 38428.0 33 54547.0 34 155070.0 35 131813.0 36 84942.0 37 145579.0 38 195756.0 39 97346.0 40 364.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.0698261292339 24.376635102910193 29.507929525617577 14.045609242238324 2 29.95290903618642 26.524946171833395 30.16720301900771 13.354941772972474 3 29.481073322066077 24.769106105155927 33.11805153612854 12.631769036649457 4 26.97714907508161 26.613942073947168 32.51563910818883 13.893269742782396 5 24.985993100733918 31.31831546778413 29.11749589053782 14.578195540944133 6 22.42196652235316 41.04303938138124 25.858912323756165 10.676081772509434 7 88.30328988493505 3.7252332553886047 6.372514064779016 1.598962794897321 8 89.51580117148612 2.6949737225939385 6.098117750561434 1.6911073553585072 9 85.29604334035608 4.8342092468687055 7.483620031023546 2.3861273817516726 10-11 46.28092514990855 24.902229527932768 18.55745143889056 10.259393883268123 12-13 33.08624082605978 27.004236797629243 25.48556479059107 14.423957585719908 14-15 14.55434908434237 33.94888060565369 36.269163984904964 15.227606325098975 16-17 20.401546546894174 23.188942652744657 34.86574213414211 21.543768666219062 18-19 24.1864190956868 26.837496816613804 30.989975227467415 17.98610886023198 20-21 27.24520176880513 27.014979279049843 29.68823651980645 16.051582432338574 22-23 21.414858889171857 24.704373393836963 30.433357256962935 23.447410460028244 24-25 18.753594332414973 25.66897413932813 37.40096774940384 18.176463778853055 26-27 16.740814483828398 35.92785868080476 29.07860069918737 18.252726136179472 28-29 15.243442224434514 28.286527909614982 37.950177112032044 18.51985275391846 30-31 22.525270298427984 29.355914152756235 30.86004676683722 17.25876878197856 32-33 26.27143287106707 28.6931678744241 27.97189359386938 17.063505660639457 34-35 19.453105827333133 29.430602180908945 29.702590697566734 21.41370129419119 36-37 24.229944666959923 28.429097307434077 29.770518371032345 17.570439654573658 38-39 19.078832218183503 31.022619405922256 29.206352881253906 20.692195494640337 40-41 21.21112217257426 26.15854420855231 29.078091357395873 23.552242261477556 42-43 20.95608084643345 25.52723820989512 29.297478758132105 24.219202185539324 44-45 18.777255573819833 32.19757831130044 28.05482369828444 20.97034241659528 46-47 21.396337369481166 30.567175236728172 27.876878197856136 20.15960919593453 48-49 22.26138494663487 26.009075544648436 31.982774986687655 19.746764522029032 50-51 19.273539693931887 32.56013705924571 27.647257657490798 20.519065589331607 52-53 22.532308475910447 26.323107911004094 30.749056560090754 20.395527052994698 54-55 23.013590165073044 27.358136735119114 30.961452087143748 18.66682101266409 56-57 23.477693144722526 23.7297247239136 30.1327066885838 22.65987544278008 58-59 24.18109415877573 25.88813002106823 28.806473271131892 21.124302549024147 60-61 24.794434283332947 28.976176695297852 26.97520431551409 19.254184705855117 62-63 23.956103998333063 24.955201074248144 32.13187322019772 18.956821707221078 64-65 19.75032991456949 30.02449470979094 31.694163406107474 18.5310119695321 66-67 17.929618225175375 28.60093070636446 26.157895955363138 27.31155511309703 68-69 17.58780357928368 31.79357766304725 25.353784177991805 25.264834579677263 70-71 19.110689232051488 29.858773412358484 29.582756465167968 21.44778089042206 72-73 23.060820040284305 29.343088000370432 27.32530734146737 20.270784617877897 74-75 22.513694348621303 32.24490079411015 24.244113629523305 20.997291227745237 76-77 27.84224295603454 27.625263352858102 25.519181348829672 19.013312342277683 78-79 19.38735443243118 29.181302525872248 30.516657791771816 20.914685249924755 80-81 16.636028986178317 28.257912161692865 32.03028268469428 23.07577616743454 82-83 18.67089574699604 25.854374551431945 33.54650059037344 21.928229111198576 84-85 15.888546755261268 25.745468015650687 31.453800384321536 26.91218484476651 86 17.85881971615771 25.71444447016878 32.635751163382956 23.790984650290557 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 666.0 1 895.0 2 2679.5 3 2768.0 4 1391.5 5 1697.5 6 2045.5 7 2178.0 8 2232.5 9 2255.0 10 2241.5 11 2231.0 12 2184.5 13 2221.0 14 2275.0 15 2519.5 16 2641.0 17 2570.0 18 2594.0 19 2727.5 20 2851.0 21 2813.0 22 3181.0 23 3905.5 24 4728.5 25 5799.5 26 7829.0 27 9664.5 28 10963.5 29 11852.0 30 14044.5 31 18209.5 32 20474.5 33 20147.5 34 21299.5 35 23646.0 36 24221.0 37 26610.5 38 29956.5 39 32854.5 40 39269.5 41 46287.5 42 54232.5 43 59633.0 44 61639.0 45 61525.0 46 65104.5 47 71417.0 48 66870.5 49 55935.5 50 50160.0 51 44147.5 52 33760.5 53 28130.5 54 25569.5 55 24924.5 56 24357.5 57 23130.0 58 20977.5 59 15641.5 60 11067.0 61 8966.5 62 6794.0 63 5034.5 64 4738.0 65 3757.5 66 2609.0 67 2175.5 68 1705.0 69 1242.0 70 814.0 71 644.0 72 576.5 73 368.0 74 215.5 75 141.0 76 54.0 77 35.0 78 39.0 79 38.0 80 20.5 81 4.0 82 4.0 83 3.5 84 4.5 85 3.5 86 2.0 87 3.0 88 2.5 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 1079825.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.805018423912042 #Duplication Level Percentage of deduplicated Percentage of total 1 81.75025386143771 12.920642684395094 2 7.173263247167551 2.267471155621085 3 2.111210441321178 1.0010315976551007 4 0.9934539418130174 0.6280623141465113 5 0.6752980984538953 0.5336549443848291 6 0.4693607241433123 0.4450952935527449 7 0.33528490374945047 0.37094288567137484 8 0.2739390198519303 0.3463689004630532 9 0.2310114769068026 0.3286026583782432 >10 2.57580349990479 9.841464287211602 >50 1.332939258585116 15.405023728095768 >100 2.0711008400326505 54.615903836271094 >500 0.005900572193825215 0.5801620755541255 >1k 5.900572193825215E-4 0.12496659399494102 >5k 5.900572193825215E-4 0.5906070446044489 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6333 0.5864839210057186 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1340 0.12409418192762715 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8521519690690622E-4 0.0 0.0 0.03157919107262751 0.0 2 1.8521519690690622E-4 0.0 0.0 0.11585210566526984 0.0 3 1.8521519690690622E-4 0.0 0.0 0.16623063922394832 0.0 4 1.8521519690690622E-4 0.0 0.0 0.23753849003310723 0.0 5 1.8521519690690622E-4 0.0 0.0 0.38228416641585444 0.0 6 1.8521519690690622E-4 0.0 0.0 0.49387632255226543 0.0 7 1.8521519690690622E-4 0.0 0.0 0.5611094390294724 0.0 8 1.8521519690690622E-4 0.0 0.0 0.7001134443081055 0.0 9 1.8521519690690622E-4 0.0 0.0 0.7470654967240062 0.0 10 1.8521519690690622E-4 0.0 0.0 0.8513416525825944 0.0 11 1.8521519690690622E-4 0.0 0.0 1.0543375083925637 0.0 12 1.8521519690690622E-4 0.0 0.0 1.2092700206051907 0.0 13 1.8521519690690622E-4 0.0 0.0 1.2648345796772624 0.0 14 1.8521519690690622E-4 0.0 0.0 1.2909499224411363 0.0 15 1.8521519690690622E-4 0.0 0.0 1.3345681013127126 0.0 16 1.8521519690690622E-4 0.0 0.0 1.415136711967217 0.0 17 1.8521519690690622E-4 0.0 0.0 1.5241358553469313 0.0 18 1.8521519690690622E-4 0.0 0.0 1.6527678095987777 0.0 19 1.8521519690690622E-4 0.0 0.0 1.733984673442456 0.0 20 1.8521519690690622E-4 0.0 0.0 1.8268700946912695 0.0 21 1.8521519690690622E-4 0.0 0.0 1.9414256939781909 0.0 22 1.8521519690690622E-4 0.0 0.0 2.065519875905818 0.0 23 1.8521519690690622E-4 0.0 0.0 2.1875766906674694 0.0 24 1.8521519690690622E-4 0.0 0.0 2.283795985460607 0.0 25 1.8521519690690622E-4 0.0 0.0 2.365568494895006 0.0 26 1.8521519690690622E-4 0.0 0.0 2.4539161438196 0.0 27 1.8521519690690622E-4 0.0 0.0 2.545134628296252 0.0 28 1.8521519690690622E-4 0.0 0.0 2.6372791887574376 0.0 29 1.8521519690690622E-4 0.0 0.0 2.745722686546431 0.0 30 1.8521519690690622E-4 0.0 0.0 2.859815247841085 0.0 31 1.8521519690690622E-4 0.0 0.0 2.975019100317181 0.0 32 2.7782279536035933E-4 0.0 0.0 3.0717940407010396 0.0 33 3.7043039381381244E-4 0.0 0.0 3.1727363230153034 0.0 34 3.7043039381381244E-4 0.0 0.0 3.28581020072697 0.0 35 3.7043039381381244E-4 0.0 0.0 3.4147199777741766 0.0 36 3.7043039381381244E-4 0.0 0.0 3.532331627810062 0.0 37 3.7043039381381244E-4 0.0 0.0 3.6509619614289353 0.0 38 3.7043039381381244E-4 0.0 0.0 3.7845021183988146 0.0 39 3.7043039381381244E-4 0.0 0.0 3.9681429861320123 0.0 40 3.7043039381381244E-4 0.0 0.0 4.1092769661750745 0.0 41 3.7043039381381244E-4 0.0 0.0 4.2454101359016505 0.0 42 3.7043039381381244E-4 0.0 0.0 4.382191558817401 0.0 43 3.7043039381381244E-4 0.0 0.0 4.51304609543213 0.0 44 3.7043039381381244E-4 0.0 0.0 4.64686407519737 0.0 45 3.7043039381381244E-4 0.0 0.0 4.783830713310027 0.0 46 3.7043039381381244E-4 0.0 0.0 4.957192137614891 0.0 47 3.7043039381381244E-4 0.0 0.0 5.105364295140416 0.0 48 3.7043039381381244E-4 0.0 0.0 5.254555136248929 0.0 49 3.7043039381381244E-4 0.0 0.0 5.419211446299169 0.0 50 3.7043039381381244E-4 0.0 0.0 5.580626490403538 0.0 51 3.7043039381381244E-4 0.0 0.0 5.748246243604288 0.0 52 3.7043039381381244E-4 0.0 0.0 5.9372583520477855 0.0 53 3.7043039381381244E-4 0.0 0.0 6.1155279790706825 0.0 54 3.7043039381381244E-4 0.0 0.0 6.310189151019841 0.0 55 3.7043039381381244E-4 0.0 0.0 6.492440904776237 0.0 56 3.7043039381381244E-4 0.0 0.0 6.676637418100155 0.0 57 3.7043039381381244E-4 0.0 0.0 6.852221424767902 0.0 58 3.7043039381381244E-4 0.0 0.0 7.017711203204223 0.0 59 3.7043039381381244E-4 0.0 0.0 7.210057185192045 0.0 60 3.7043039381381244E-4 0.0 0.0 7.414349547380363 0.0 61 3.7043039381381244E-4 0.0 0.0 7.626235732641863 0.0 62 3.7043039381381244E-4 0.0 0.0 7.869052855786817 0.0 63 3.7043039381381244E-4 0.0 0.0 8.11881554881578 0.0 64 3.7043039381381244E-4 0.0 0.0 8.35505753247054 0.0 65 3.7043039381381244E-4 0.0 0.0 8.570370198874818 0.0 66 4.6303799226726555E-4 0.0 0.0 8.759567522515223 0.0 67 4.6303799226726555E-4 0.0 0.0 8.972564998958164 0.0 68 4.6303799226726555E-4 0.0 0.0 9.210196096589724 0.0 69 4.6303799226726555E-4 0.0 0.0 9.518579399439725 0.0 70 4.6303799226726555E-4 0.0 0.0 9.736855508994513 0.0 71 4.6303799226726555E-4 0.0 0.0 9.960873289653415 0.0 72 4.6303799226726555E-4 0.0 0.0 10.17525988007316 0.0 73 4.6303799226726555E-4 0.0 0.0 10.404648901442364 0.0 74 4.6303799226726555E-4 0.0 0.0 10.650522075336282 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGG 30 4.0599843E-8 80.00001 2 GATCGAC 15 0.0013097692 80.00001 9 GCGAACG 30 4.0599843E-8 80.00001 1 GCGCGAC 75 0.0 74.666664 9 TCGATAG 75 0.0 74.666664 1 ACGGGTA 70 0.0 74.28571 5 AGTAGCG 95 0.0 71.57895 1 CGTATGG 140 0.0 71.42857 2 CGTTTTT 3650 0.0 71.0137 1 TAGGGCG 80 0.0 70.0 5 GGCGCGA 80 0.0 70.0 8 GCGTAAG 80 0.0 70.0 1 CGTAAGG 185 0.0 69.189186 2 TAGGGAC 1225 0.0 68.897964 5 CTAAGCG 105 0.0 68.571434 1 ATAGCCG 65 0.0 67.69231 80 TATCACG 30 3.7954287E-6 66.66667 1 CGCGGGT 30 3.7954287E-6 66.66667 4 AGGGCGA 360 0.0 65.55556 6 ACGGGAT 575 0.0 65.391304 5 >>END_MODULE