##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547747_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 580140 Sequences flagged as poor quality 0 Sequence length 86 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.774831937118627 31.0 31.0 33.0 30.0 34.0 2 32.21421898162512 33.0 31.0 34.0 31.0 34.0 3 32.38768228358672 34.0 31.0 34.0 31.0 34.0 4 35.976828007032786 37.0 35.0 37.0 35.0 37.0 5 35.90353880097907 37.0 35.0 37.0 35.0 37.0 6 35.964281035612096 37.0 35.0 37.0 35.0 37.0 7 36.201949529423935 37.0 35.0 37.0 35.0 37.0 8 36.15950977350295 37.0 35.0 37.0 35.0 37.0 9 38.083498810631916 39.0 39.0 39.0 37.0 39.0 10-11 37.48305150480918 39.0 37.5 39.0 35.0 39.0 12-13 35.840396283655664 37.0 35.0 39.0 32.5 39.0 14-15 36.64633536732513 38.0 35.0 41.0 32.5 41.0 16-17 37.015881511359325 38.0 35.0 41.0 33.0 41.0 18-19 36.98598355569345 37.0 35.0 41.0 33.0 41.0 20-21 36.690136863515704 36.0 35.0 41.0 33.0 41.0 22-23 36.45492381149378 36.0 35.0 41.0 32.0 41.0 24-25 36.377239976557384 35.0 35.0 40.0 32.0 41.0 26-27 36.331926776295376 35.0 35.0 40.0 32.5 41.0 28-29 36.402128796497394 36.0 35.0 40.0 32.0 41.0 30-31 36.282808460026885 36.0 35.0 40.0 32.0 41.0 32-33 35.87539042300135 35.0 35.0 40.0 31.0 41.0 34-35 35.62795273554659 35.0 35.0 40.0 30.5 41.0 36-37 35.369734029716966 35.0 35.0 40.0 30.0 41.0 38-39 35.367413900093084 35.0 35.0 40.0 30.0 41.0 40-41 35.20470920812218 36.0 35.0 40.0 29.0 41.0 42-43 35.17054159340849 35.0 35.0 40.0 29.5 41.0 44-45 35.0323680490916 35.0 34.0 40.0 29.0 41.0 46-47 34.95650015513497 35.0 34.0 40.0 29.0 41.0 48-49 34.92743648084945 35.5 34.5 40.0 29.0 41.0 50-51 34.752146033716 35.0 34.0 40.0 29.0 41.0 52-53 34.55414382735202 35.0 34.0 39.0 28.5 41.0 54-55 34.36920398524494 35.0 34.0 39.0 28.0 41.0 56-57 34.04188644120384 35.0 34.0 38.5 26.5 41.0 58-59 33.75513582928259 35.0 34.0 38.0 25.5 40.0 60-61 33.49291377943255 35.0 33.0 37.0 25.5 40.0 62-63 32.98684714034543 35.0 32.5 37.0 24.0 40.0 64-65 32.79436084393423 35.0 32.5 36.0 24.5 40.0 66-67 32.67238080463336 35.0 33.0 36.0 24.0 39.0 68-69 32.52844399627676 35.0 33.0 35.5 23.5 39.0 70-71 32.36584100389561 35.0 33.0 35.0 24.0 38.0 72-73 32.1806167476816 35.0 32.5 35.0 23.5 37.5 74-75 31.95614162098804 35.0 32.0 35.0 23.0 37.0 76-77 29.915799634570966 32.5 29.5 34.5 19.0 35.0 78-79 30.795033957320648 34.0 30.5 35.0 19.5 36.0 80-81 31.46289947254111 34.5 32.0 35.0 20.5 36.0 82-83 31.467243251628915 35.0 32.0 35.0 20.0 36.0 84-85 31.351242803461233 35.0 32.0 35.0 20.0 35.0 86 30.9556055434895 34.0 31.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 3.0 11 6.0 12 9.0 13 22.0 14 119.0 15 338.0 16 786.0 17 1635.0 18 2882.0 19 4236.0 20 5130.0 21 5394.0 22 4842.0 23 4457.0 24 4927.0 25 5440.0 26 6376.0 27 7733.0 28 9162.0 29 11520.0 30 14114.0 31 17282.0 32 22444.0 33 32438.0 34 107423.0 35 86000.0 36 39814.0 37 68764.0 38 80007.0 39 36677.0 40 157.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.58709966559796 24.936911779915192 29.79556658737546 14.680421967111387 2 28.89337056572551 26.0766366739063 31.969179853138897 13.060812907229288 3 28.25524873306443 23.924052814837797 33.31006308822008 14.510635363877686 4 26.05129796256076 27.55438342469059 31.506015789292242 14.888302823456407 5 24.4254835039818 31.47223084083152 29.506326059227085 14.595959595959595 6 22.787430620195124 40.94890888406247 25.817733650498155 10.445926845244252 7 88.37470265797911 4.5252869996897305 5.798600337849485 1.301410004481677 8 90.03137173785638 3.050987692625918 5.3666356396731825 1.5510049298445203 9 86.669079877271 4.784707139655945 6.509635605198745 2.0365773778743064 10-11 56.05560726721136 20.602182231875066 15.004567862929639 8.337642637983935 12-13 36.246940393698075 31.20608818561037 20.209863136484294 12.33710828420726 14-15 12.414675767918089 37.34219326369497 37.33771158685835 12.905419381528596 16-17 14.300255110835316 19.881063191643396 39.15451442755197 26.66416726996932 18-19 23.976884889854173 24.60001034233116 31.2507325817906 20.172372186024063 20-21 28.701606508773743 25.829110214775742 27.031492398386597 18.437790878063915 22-23 19.850467128624125 25.867980142724168 26.301151446202642 27.980401282449062 24-25 16.979349812114318 23.878201813355396 40.94908125624849 18.193367118281795 26-27 14.450391284862274 40.03688764780915 28.007636087840865 17.50508497948771 28-29 12.380718447271349 28.252835522460096 42.1303478470714 17.23609818319716 30-31 22.96583583273003 31.28710311304168 29.63991450339573 16.107146550832557 32-33 30.78817182059503 28.441841624435483 25.443168890267863 15.326817664701622 34-35 18.87078980935636 29.165804805736546 28.50889440479884 23.45451098010825 36-37 25.283207501637534 28.521563760471608 30.110662943427446 16.084565794463405 38-39 17.943255076360877 33.89406005446961 27.216016823525358 20.946668045644152 40-41 20.078515530733963 26.13360568138725 27.31297617816389 26.474902609714896 42-43 22.147240321301755 23.064001792670734 26.427672630744304 28.361085255283207 44-45 16.2213431240735 36.59702830351294 26.37544385837901 20.806184714034544 46-47 21.23875271486193 33.65739304305857 24.30689143999724 20.796962802082255 48-49 21.514289654221393 24.17063122694522 33.40555727927742 20.90952183955597 50-51 17.68245595890647 34.94113489847278 26.702692453545694 20.67371668907505 52-53 24.783155789981727 25.34009032302548 29.71627538180439 20.160478505188404 54-55 26.14791257282725 26.64942944806426 29.54424794015238 17.658410038956113 56-57 25.14341365877202 21.74828489674906 28.769004033509155 24.339297410969767 58-59 27.61066294342745 25.241665804805734 26.32562829661806 20.822042955148756 60-61 28.174750922191194 29.36058537594374 24.40109283965939 18.063570862205676 62-63 26.484469266039234 23.08916813183025 31.84843313682904 18.57792946530148 64-65 17.31763022718654 32.05346985210467 32.099320853587066 18.52957906712173 66-67 15.352414934326198 27.81983659116765 23.3416933843555 33.48605509015065 68-69 16.070862205674494 34.56045092563864 19.80573654635088 29.56295032233599 70-71 18.455631399317408 31.103095804460988 27.694091081463096 22.747181714758508 72-73 24.35765504878133 30.328886130933913 24.493139586996243 20.82031923328852 74-75 24.55329747991864 34.25905815837557 19.80237528872341 21.385269072982382 76-77 33.67678491398628 26.66218498983004 21.857999793153375 17.803030303030305 78-79 18.976195401110076 28.711086979005067 32.1798186644603 20.13289895542455 80-81 13.571120763953529 27.413210604336886 34.67059675250802 24.345071879201573 82-83 17.560933567759506 23.192505257351673 35.24554417899128 24.001016995897544 84-85 14.352570069293618 24.059882097424758 31.223756334677837 30.36379149860379 86 17.65660013100286 23.025131864722308 33.91698555521081 25.401282449064016 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 543.0 1 514.0 2 1170.5 3 1188.0 4 593.5 5 733.0 6 905.5 7 1012.0 8 1024.0 9 1080.5 10 1078.5 11 1089.5 12 1159.5 13 1206.0 14 1240.0 15 1252.5 16 1326.0 17 1422.0 18 1435.0 19 1433.5 20 1471.5 21 1489.0 22 1566.0 23 1679.0 24 2119.0 25 2508.5 26 2773.5 27 3604.5 28 4859.0 29 5562.0 30 6418.0 31 7637.0 32 8411.5 33 8588.5 34 8949.5 35 9420.0 36 9295.0 37 9917.5 38 10519.0 39 12793.0 40 17999.5 41 26150.5 42 32715.5 43 34041.0 44 36035.0 45 38106.0 46 40744.5 47 44696.5 48 45520.0 49 37645.5 50 30338.0 51 24435.5 52 15963.5 53 13358.0 54 13093.0 55 12443.0 56 12766.5 57 13511.0 58 12398.5 59 9055.0 60 6102.0 61 4668.5 62 3751.0 63 2791.0 64 2037.0 65 1661.0 66 1278.0 67 1075.5 68 912.5 69 731.5 70 638.5 71 759.0 72 515.0 73 270.5 74 211.0 75 133.5 76 73.5 77 28.5 78 16.5 79 8.0 80 10.0 81 8.5 82 4.5 83 3.0 84 1.0 85 1.0 86 2.0 87 1.0 88 0.5 89 1.0 90 1.0 91 0.5 92 0.5 93 1.0 94 1.5 95 2.0 96 1.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 86 580140.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.71648222842762 #Duplication Level Percentage of deduplicated Percentage of total 1 83.23142123552522 13.913365739304307 2 6.429226946039865 2.1494811597200676 3 1.8034832283277822 0.9044368600682594 4 0.8836964703698739 0.5908918536904885 5 0.5485723713381248 0.458510014824008 6 0.37327668876767134 0.37439238804426517 7 0.26088122170779243 0.30527114144861583 8 0.17220222934862187 0.23028924052814836 9 0.18148258901411646 0.27303754266211605 >10 2.469606822095505 10.587789154342056 >50 1.7086173295249487 20.949253628434516 >100 1.9334082636447065 48.15716895921674 >500 0.002062302147887687 0.24787120350260283 >1k 0.002062302147887687 0.8582411142138104 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2975 0.512807253421588 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2004 0.34543386079222255 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 819 0.14117282035370773 No Hit GAGCTGGGCTGGCAAGGAAAGGTTGGGGTGTGCTGGCTGAAGGAGAGAAA 619 0.10669838314889508 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04964318957493019 0.0 2 0.0 0.0 0.0 0.13962147067949116 0.0 3 0.0 0.0 0.0 0.19857275829972076 0.0 4 0.0 0.0 0.0 0.3092357017271693 0.0 5 0.0 0.0 0.0 0.49005412486641153 0.0 6 0.0 0.0 0.0 0.6517392353569827 0.0 7 0.0 0.0 0.0 0.7487847760885303 0.0 8 0.0 0.0 0.0 0.9387389250870479 0.0 9 0.0 0.0 0.0 0.9942427689867963 0.0 10 0.0 0.0 0.0 1.0978384527872582 0.0 11 0.0 0.0 0.0 1.307098286620471 0.0 12 0.0 0.0 0.0 1.4625779984141758 0.0 13 0.0 0.0 0.0 1.522908263522598 0.0 14 0.0 0.0 0.0 1.5453166477057263 0.0 15 0.0 0.0 0.0 1.5827214120729478 0.0 16 0.0 0.0 0.0 1.6656324335505224 0.0 17 0.0 0.0 0.0 1.7583686696314682 0.0 18 0.0 0.0 0.0 1.885924087289275 0.0 19 0.0 0.0 0.0 1.9595270107215499 0.0 20 0.0 0.0 0.0 2.0322680732237046 0.0 21 0.0 0.0 0.0 2.134829523908022 0.0 22 0.0 0.0 0.0 2.2258420381287274 0.0 23 0.0 0.0 0.0 2.3299548384872617 0.0 24 0.0 0.0 0.0 2.4059709725238734 0.0 25 0.0 0.0 0.0 2.4707829144689213 0.0 26 0.0 0.0 0.0 2.5442134657151723 0.0 27 0.0 0.0 0.0 2.6024752645913054 0.0 28 0.0 0.0 0.0 2.674699210535388 0.0 29 0.0 0.0 0.0 2.753818043920433 0.0 30 0.0 0.0 0.0 2.8593098217671598 0.0 31 0.0 0.0 0.0 2.9546316406384667 0.0 32 0.0 0.0 0.0 3.043748060812907 0.0 33 0.0 0.0 0.0 3.12234977763988 0.0 34 0.0 0.0 0.0 3.212155686558417 0.0 35 0.0 0.0 0.0 3.3469507360292345 0.0 36 0.0 0.0 0.0 3.451580652945841 0.0 37 0.0 0.0 0.0 3.550522287723653 0.0 38 0.0 0.0 0.0 3.6399834522701418 0.0 39 0.0 0.0 0.0 3.741510669838315 0.0 40 0.0 0.0 0.0 3.85837901196263 0.0 41 0.0 0.0 0.0 3.9804185196676665 0.0 42 0.0 0.0 0.0 4.097631606164029 0.0 43 0.0 0.0 0.0 4.198986451546179 0.0 44 0.0 0.0 0.0 4.313096838694109 0.0 45 0.0 0.0 0.0 4.450305098769262 0.0 46 0.0 0.0 0.0 4.5973385734477885 0.0 47 0.0 0.0 0.0 4.729720412314269 0.0 48 0.0 0.0 0.0 4.875892026062674 0.0 49 0.0 0.0 0.0 5.0318888544144516 0.0 50 0.0 0.0 0.0 5.1809907953252665 0.0 51 0.0 0.0 0.0 5.333540179956562 0.0 52 0.0 0.0 0.0 5.4874685420760505 0.0 53 0.0 0.0 0.0 5.636915227358913 0.0 54 0.0 0.0 0.0 5.807046574964664 0.0 55 0.0 0.0 0.0 5.971144896059572 0.0 56 0.0 0.0 0.0 6.148515875478333 0.0 57 0.0 0.0 0.0 6.3077877753645675 0.0 58 0.0 0.0 0.0 6.448271106974179 0.0 59 0.0 0.0 0.0 6.602027096907643 0.0 60 0.0 0.0 0.0 6.760437135863757 0.0 61 1.7237218602406316E-4 0.0 0.0 6.94935705174613 0.0 62 1.7237218602406316E-4 0.0 0.0 7.126038542420795 0.0 63 1.7237218602406316E-4 0.0 0.0 7.3730478849932775 0.0 64 1.7237218602406316E-4 0.0 0.0 7.571620643292999 0.0 65 1.7237218602406316E-4 0.0 0.0 7.758989209501155 0.0 66 1.7237218602406316E-4 0.0 0.0 7.929465301478953 1.7237218602406316E-4 67 1.7237218602406316E-4 0.0 0.0 8.101665115316992 1.7237218602406316E-4 68 1.7237218602406316E-4 0.0 0.0 8.308511738545869 1.7237218602406316E-4 69 1.7237218602406316E-4 0.0 0.0 8.51260040679836 1.7237218602406316E-4 70 1.7237218602406316E-4 0.0 0.0 8.686006825938566 1.7237218602406316E-4 71 1.7237218602406316E-4 0.0 0.0 8.872513531216603 1.7237218602406316E-4 72 1.7237218602406316E-4 0.0 0.0 9.059537353052711 1.7237218602406316E-4 73 3.447443720481263E-4 0.0 0.0 9.270865653118213 1.7237218602406316E-4 74 3.447443720481263E-4 0.0 0.0 9.49305340090323 1.7237218602406316E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTACG 20 4.0891908E-5 80.0 2 TCGTTAG 15 0.0013094622 80.0 1 TTAGCGA 20 4.0891908E-5 80.0 1 GGGTACG 45 1.8189894E-12 80.0 7 TTCGTAG 25 1.284001E-6 80.0 1 ACGTGCG 30 4.0565283E-8 80.0 1 TAGGGTC 95 0.0 80.0 5 ACTAACG 20 4.0891908E-5 80.0 1 CTCGAGG 25 1.284001E-6 80.0 2 GGCGATT 40 4.1836756E-11 80.0 8 GCTAATG 60 0.0 80.0 1 GACTACG 30 4.0565283E-8 80.0 1 AGTACGG 150 0.0 74.66667 2 CGTTAGG 70 0.0 74.28571 2 CTAGACG 65 0.0 73.84615 1 GCGTAAG 60 0.0 73.33333 1 GCGTTAG 55 0.0 72.72727 1 CGTTTGG 55 0.0 72.72727 2 AGGCGAG 105 0.0 72.38096 1 GGCGATA 105 0.0 72.38096 8 >>END_MODULE