SRR1547743_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547743_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	886915
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5794	0.6532756803075831	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2006	0.2261772548665881	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	911	0.10271559281329103	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	906	0.10215184093176911	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACTCC	35	1.2115015E-7	45.000004	36
CGTTAGG	195	0.0	45.000004	2
CCACTAG	35	1.2115015E-7	45.000004	10
GCGATAT	95	0.0	45.000004	9
TATAGCG	35	1.2115015E-7	45.000004	1
CCACGTA	35	1.2115015E-7	45.000004	19
TCCGGAC	25	3.890082E-5	45.0	15
GATACGT	20	7.0324144E-4	45.0	22
CCTTACG	25	3.890082E-5	45.0	17
CTACTTA	25	3.890082E-5	45.0	23
CTCGTCT	25	3.890082E-5	45.0	40
CTATCGT	20	7.0324144E-4	45.0	31
ACGTTAG	45	3.8380676E-10	45.0	1
ACGCACG	20	7.0324144E-4	45.0	41
CACGCGA	20	7.0324144E-4	45.0	41
CAACCGA	20	7.0324144E-4	45.0	44
ACCGAAT	20	7.0324144E-4	45.0	2
TGAACGA	40	6.8121153E-9	45.0	27
CACGATT	20	7.0324144E-4	45.0	10
CGACATA	20	7.0324144E-4	45.0	30