SRR1547741_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547741_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1017054
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7143	0.7023225905409153	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1173	0.11533310915644596	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1083	0.1064840214973836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	45	3.8380676E-10	45.000004	4
CTAACGG	25	3.8904873E-5	45.000004	2
CTTATCG	25	3.8904873E-5	45.000004	25
AGGCACG	45	3.8380676E-10	45.000004	10
ACGTGCG	25	3.8904873E-5	45.000004	1
CAGTCGA	25	3.8904873E-5	45.000004	14
CGCGTTC	25	3.8904873E-5	45.000004	25
GCGTCGC	25	3.8904873E-5	45.000004	21
TGTCGTT	25	3.8904873E-5	45.000004	38
TATCGAA	25	3.8904873E-5	45.000004	27
CGATACT	25	3.8904873E-5	45.000004	10
TCGGTCT	25	3.8904873E-5	45.000004	42
ATCGACG	25	3.8904873E-5	45.000004	1
TGCAACG	25	3.8904873E-5	45.000004	1
GCATACG	25	3.8904873E-5	45.000004	24
CGAACAC	20	7.032903E-4	45.0	33
CGAGTAG	20	7.032903E-4	45.0	45
CAACGAA	20	7.032903E-4	45.0	14
CGACGGA	20	7.032903E-4	45.0	29
CGTGCGG	85	0.0	45.0	2