##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547739_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 998111 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.55215602272693 31.0 31.0 33.0 30.0 34.0 2 31.98376633460607 31.0 31.0 34.0 30.0 34.0 3 32.12865603124302 33.0 31.0 34.0 30.0 34.0 4 35.815463410382215 37.0 35.0 37.0 35.0 37.0 5 35.693316675199455 37.0 35.0 37.0 33.0 37.0 6 35.74379603070199 37.0 35.0 37.0 33.0 37.0 7 36.07704353523806 37.0 35.0 37.0 35.0 37.0 8 36.09702227507762 37.0 35.0 37.0 35.0 37.0 9 37.909670367323876 39.0 38.0 39.0 35.0 39.0 10 37.28900493031336 39.0 37.0 39.0 34.0 39.0 11 37.00909818647425 39.0 37.0 39.0 33.0 39.0 12 36.519815932296105 39.0 35.0 39.0 32.0 39.0 13 36.32439778742044 39.0 35.0 39.0 32.0 39.0 14 37.336165015714684 40.0 35.0 41.0 32.0 41.0 15 37.531341704479765 40.0 35.0 41.0 32.0 41.0 16 37.63040283094766 40.0 35.0 41.0 33.0 41.0 17 37.57885445606751 40.0 35.0 41.0 33.0 41.0 18 37.49092736178641 39.0 35.0 41.0 33.0 41.0 19 37.43539345824262 39.0 35.0 41.0 32.0 41.0 20 37.30718928055096 39.0 35.0 41.0 32.0 41.0 21 37.20314173473692 39.0 35.0 41.0 32.0 41.0 22 37.12891852709769 39.0 35.0 41.0 32.0 41.0 23 37.074708123645564 39.0 35.0 41.0 32.0 41.0 24 36.99000111210076 39.0 35.0 41.0 32.0 41.0 25 36.89024166650803 39.0 35.0 41.0 31.0 41.0 26 36.76501611544207 38.0 35.0 41.0 31.0 41.0 27 36.728964013020594 39.0 35.0 41.0 31.0 41.0 28 36.73081551049933 38.0 35.0 41.0 31.0 41.0 29 36.73788787018678 39.0 35.0 41.0 31.0 41.0 30 36.74798093598808 39.0 35.0 41.0 31.0 41.0 31 36.62827781679593 39.0 35.0 41.0 31.0 41.0 32 36.48504024101528 39.0 35.0 41.0 30.0 41.0 33 36.39052670494564 39.0 35.0 41.0 30.0 41.0 34 36.212039542696154 38.0 35.0 41.0 30.0 41.0 35 36.10411266883142 38.0 35.0 41.0 30.0 41.0 36 35.972738503032225 38.0 35.0 41.0 29.0 41.0 37 35.74768537767844 38.0 35.0 41.0 29.0 41.0 38 35.81897905142815 38.0 35.0 41.0 29.0 41.0 39 35.70318832274166 38.0 35.0 40.0 29.0 41.0 40 35.575066300241154 38.0 35.0 40.0 28.0 41.0 41 35.50838033044421 38.0 34.0 40.0 28.0 41.0 42 35.474138647905896 38.0 34.0 40.0 28.0 41.0 43 35.42445880267826 38.0 34.0 40.0 28.0 41.0 44 35.28549530062288 38.0 34.0 40.0 27.0 41.0 45 35.24670502579372 37.0 34.0 40.0 27.0 41.0 46 35.082076041642665 37.0 34.0 40.0 27.0 41.0 47 35.102081832581746 37.0 34.0 40.0 27.0 41.0 48 34.93839562934383 37.0 34.0 40.0 26.0 41.0 49 34.877293206867776 37.0 34.0 40.0 27.0 41.0 50 34.79903938539902 36.0 34.0 40.0 26.0 41.0 51 34.11827241659495 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 2.0 13 5.0 14 9.0 15 34.0 16 59.0 17 152.0 18 357.0 19 677.0 20 1181.0 21 1991.0 22 3006.0 23 4311.0 24 6390.0 25 9017.0 26 12441.0 27 15197.0 28 16707.0 29 19175.0 30 22261.0 31 27533.0 32 34447.0 33 45735.0 34 77039.0 35 102727.0 36 75804.0 37 100414.0 38 149617.0 39 271644.0 40 176.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.55459563114724 23.651978587551888 29.460050034515202 14.333375746785679 2 31.47716035591232 25.009042080490048 29.534190085070698 13.979607478526937 3 28.494025213628543 25.401583591404165 31.533366529373986 14.571024665593304 4 27.12273484612433 26.8001254369504 31.226687212143737 14.850452504781533 5 24.404900857720232 31.502908995091726 29.207573105596474 14.884617041591566 6 22.934022368253633 40.741160051336976 25.895717009430815 10.42910057097858 7 88.40239211871224 3.5537129637885965 6.32625028679175 1.7176446307074063 8 88.97166747986948 2.817321921108975 6.473428306070167 1.737582292951385 9 84.435498656963 4.917789704752277 7.665680470408602 2.9810311678761177 10 44.637720654316006 28.33933300003707 15.477336689005531 11.545609656641394 11 34.853838901685286 22.158357136631096 25.36491432315644 17.622889638527177 12 33.122668721214374 20.871526313205646 27.611858801275606 18.39394616430437 13 25.241280779392273 25.342772497247303 29.051878999429924 20.364067723930503 14 20.422578250314842 26.561274247052687 30.8743215934901 22.14182590914237 15 20.467763605450696 25.898622497898533 34.42693247544612 19.206681421204657 16 25.007238673854914 23.592967114880008 31.501806913259145 19.897987298005933 17 24.765782563262 25.4816348081526 26.340557312763814 23.412025315821587 18 25.833699859033715 25.88659978699764 28.33191899498152 19.947781358987125 19 27.040178897938205 25.279052129472575 26.852724797141803 20.82804417544742 20 28.545722870502377 25.633221154761344 27.220519561451585 18.600536413284694 21 27.1021960483353 24.464914222967185 29.866517852222852 18.566371876474662 22 26.465292938360562 21.028723258234805 30.716623702173408 21.789360101231225 23 24.465715737027242 23.94753689719881 29.691387030099857 21.895360335674088 24 23.322656498124957 24.80255202076723 31.963679390368405 19.911112090739408 25 22.661607777090925 26.634212026518096 29.180622195326972 21.52355800106401 26 21.97280663172733 29.090351674312775 26.494448012295223 22.442393681664665 27 21.20726051511305 28.315087199720274 29.665337823147926 20.81231446201875 28 20.28431707495459 27.24837217503865 30.867007777692063 21.600302972314704 29 21.744074556837866 25.36751924385164 30.462643934392062 22.42576226491843 30 22.902462752138792 26.853125554171832 29.843875080026173 20.40053661366321 31 25.74092460658183 25.505479851439368 27.688703961783812 21.06489158019499 32 26.495850661900327 25.543852337064717 27.210099878670807 20.750197122364145 33 25.750743153817563 25.540345713051956 27.048795174083846 21.66011595904664 34 22.38047672052507 26.034378941821103 28.992066012697986 22.593078324955844 35 23.747258571441453 25.8996243904736 29.00148380290368 21.351633235181257 36 26.423514017979965 25.79793229410356 27.33253115134489 20.446022536571583 37 23.968376262760355 27.106303807893113 28.024337974433706 20.90098195491283 38 23.689749937632186 27.201984548812707 26.682503248636674 22.42576226491843 39 22.864190455770952 27.22492788878191 27.233343786412533 22.677537869034605 40 24.80255202076723 25.576013088724604 27.11001081042089 22.511424080087288 41 22.09784282509661 24.256921324381757 28.899691517276132 24.7455443332455 42 22.663110615953535 24.303308950607697 27.876458630352737 25.15712180308603 43 22.71290467693473 25.65836865839571 28.183238136840494 23.44548852782907 44 22.72182152085289 26.281345461576922 27.366996255927447 23.629836761642743 45 21.524459704381577 27.724671905228977 26.755941974389625 23.994926415999824 46 23.086009471892403 27.60404403919003 26.82627483315984 22.483671655757725 47 22.687656984042857 25.977772011329403 29.824839121099757 21.509731883527987 48 23.32295706589748 25.690429220798087 29.540301629778654 21.446312083525783 49 22.86459121280098 25.748839557924917 29.282815237984554 22.103753991289548 50 22.234801540109267 26.441347705816288 29.00959913276179 22.314251621312657 51 21.714819293645697 27.230939244232356 27.767152150412127 23.28708931170982 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 738.0 1 1468.0 2 2198.0 3 6130.5 4 10063.0 5 6850.0 6 3637.0 7 3687.5 8 3738.0 9 3974.0 10 4210.0 11 4146.0 12 4082.0 13 3875.0 14 3668.0 15 3525.0 16 3382.0 17 3287.5 18 3193.0 19 2948.0 20 2703.0 21 3290.5 22 3878.0 23 4374.5 24 4871.0 25 5148.5 26 7091.0 27 8756.0 28 10494.5 29 12233.0 30 14531.5 31 16830.0 32 19123.5 33 21417.0 34 25918.0 35 30419.0 36 31112.5 37 31806.0 38 35737.5 39 39669.0 40 44045.5 41 48422.0 42 54158.5 43 59895.0 44 62666.5 45 65438.0 46 65824.0 47 66210.0 48 69353.0 49 72496.0 50 71633.5 51 70771.0 52 66996.0 53 63221.0 54 62194.0 55 61167.0 56 58897.0 57 56627.0 58 53102.5 59 49578.0 60 47364.5 61 45151.0 62 40158.5 63 35166.0 64 31993.0 65 28820.0 66 24998.0 67 21176.0 68 17725.5 69 14275.0 70 12224.5 71 10174.0 72 7938.5 73 5703.0 74 4509.5 75 2641.5 76 1967.0 77 1444.5 78 922.0 79 680.5 80 439.0 81 295.0 82 151.0 83 113.5 84 76.0 85 46.5 86 17.0 87 13.0 88 9.0 89 6.0 90 3.0 91 1.5 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 998111.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.39508227766703 #Duplication Level Percentage of deduplicated Percentage of total 1 80.56412311647976 15.625477964722212 2 5.437933624201096 2.1093834012374466 3 1.706309830586416 0.9928205866624686 4 0.9826444737313103 0.7623388167085432 5 0.6560834274107821 0.6362396027822951 6 0.4999685061444211 0.5818158187747993 7 0.4146825149544857 0.5629961047656497 8 0.3271791765123232 0.5076533638396682 9 0.28067674402482046 0.48993736894101725 >10 5.956181099933265 31.744756517105138 >50 2.9165817679609973 38.8527483655065 >100 0.2555580106565939 6.286077513055412 >500 0.0010388537018560726 0.10114623817022667 >1k 5.194268509280363E-4 0.11786962017845139 >5k 5.194268509280363E-4 0.6287387175501838 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6241 0.6252811561038802 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1170 0.1172214312836949 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018635201896382268 0.0 2 0.0 0.0 0.0 0.10139152859752072 0.0 3 0.0 0.0 0.0 0.15419126730393715 0.0 4 0.0 0.0 0.0 0.22502507236169123 0.0 5 0.0 0.0 0.0 0.39404434977672825 0.0 6 0.0 0.0 0.0 0.5334076069695655 0.0 7 0.0 0.0 0.0 0.6217745320911201 0.0 8 0.0 0.0 0.0 0.7842815077681741 0.0 9 0.0 0.0 0.0 0.8407882490023655 0.0 10 0.0 0.0 0.0 0.9583102480585827 0.0 11 0.0 0.0 0.0 1.1879440262656158 0.0 12 0.0 0.0 0.0 1.3427364291145976 0.0 13 0.0 0.0 0.0 1.4112658812496806 0.0 14 0.0 0.0 0.0 1.4416232262744324 0.0 15 0.0 0.0 0.0 1.49632656087349 0.0 16 0.0 0.0 0.0 1.6048315267540383 0.0 17 0.0 0.0 0.0 1.7214518224926887 0.0 18 0.0 0.0 0.0 1.8540022101750206 0.0 19 0.0 0.0 0.0 1.9371592939061888 0.0 20 1.0018925750743154E-4 0.0 0.0 2.0332407918558157 0.0 21 1.0018925750743154E-4 0.0 0.0 2.1552713074998673 0.0 22 2.0037851501486308E-4 0.0 0.0 2.2762999305688445 0.0 23 2.0037851501486308E-4 0.0 0.0 2.3956253362601956 0.0 24 2.0037851501486308E-4 0.0 0.0 2.484593396926795 0.0 25 2.0037851501486308E-4 0.0 0.0 2.574062403880931 0.0 26 2.0037851501486308E-4 0.0 0.0 2.6635314108350676 0.0 27 2.0037851501486308E-4 0.0 0.0 2.7930761207921764 0.0 28 2.0037851501486308E-4 0.0 0.0 2.8903598898318923 0.0 29 2.0037851501486308E-4 0.0 0.0 3.0075813211155875 0.0 30 3.005677725222946E-4 0.0 0.0 3.131415243394773 0.0 31 3.005677725222946E-4 0.0 0.0 3.2451300506657077 0.0 32 3.005677725222946E-4 0.0 0.0 3.344918551143109 0.0 33 3.005677725222946E-4 0.0 0.0 3.4490151896933305 0.0 34 3.005677725222946E-4 0.0 0.0 3.5717470301399343 0.0 35 3.005677725222946E-4 0.0 0.0 3.69477943835906 0.0 36 3.005677725222946E-4 0.0 0.0 3.806590649737354 0.0 37 3.005677725222946E-4 0.0 0.0 3.9374378200420597 0.0 38 4.0075703002972617E-4 0.0 0.0 4.081509972337746 0.0 39 4.0075703002972617E-4 0.0 0.0 4.341701474084545 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATGA 20 7.0328417E-4 45.0 18 CGGTTAT 20 7.0328417E-4 45.0 31 ATTCGCG 20 7.0328417E-4 45.0 1 CAATTCG 20 7.0328417E-4 45.0 16 TATTCCG 20 7.0328417E-4 45.0 14 AACGCGT 25 3.8904356E-5 45.0 12 GCGATAC 25 3.8904356E-5 45.0 9 ACGACTA 25 3.8904356E-5 45.0 13 AATAGCG 80 0.0 42.1875 1 CGTTTTT 2860 0.0 41.93182 1 CGACGGT 170 0.0 41.02941 28 ACGTTAG 50 1.0804797E-9 40.5 1 CGGTCTA 140 0.0 40.178574 31 AACGTTA 45 1.9279469E-8 40.0 45 TACCGGT 45 1.9279469E-8 40.0 40 GTAGGGC 375 0.0 39.6 4 GTTAACG 40 3.4576078E-7 39.375 1 ACGTAGG 150 0.0 39.0 2 TCGACGG 75 0.0 39.0 2 TTAGGGA 1325 0.0 38.88679 4 >>END_MODULE