SRR1547736_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547736_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1189052
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7668	0.6448834870131837	No Hit
GGGAATGGTTACATCAGTGCGGCAGAACTGCGCCACGTCATGACAAACTTA	1587	0.13346767004302587	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCA	25	3.8908867E-5	45.000004	15
CTATACG	35	1.2119744E-7	45.000004	1
TCGATCT	25	3.8908867E-5	45.000004	36
CCGTACA	25	3.8908867E-5	45.000004	34
CGAGGTA	35	1.2119744E-7	45.000004	13
CGCTAGA	25	3.8908867E-5	45.000004	14
GTCACGA	35	1.2119744E-7	45.000004	21
TATAGCG	35	1.2119744E-7	45.000004	1
ACCGTAC	25	3.8908867E-5	45.000004	33
CACCGTA	25	3.8908867E-5	45.000004	32
ATTGCCG	25	3.8908867E-5	45.000004	15
CGTATTA	20	7.033386E-4	45.0	24
ACGTTAG	20	7.033386E-4	45.0	1
ATCACGT	20	7.033386E-4	45.0	43
CCCCGTA	20	7.033386E-4	45.0	21
TCGTGAC	20	7.033386E-4	45.0	26
TACGATA	20	7.033386E-4	45.0	36
AACGCTA	40	6.8157533E-9	45.0	41
CGAATCG	20	7.033386E-4	45.0	16
AATCCGT	30	2.165565E-6	44.999996	45