##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547729_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1056018 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.524226859769435 31.0 31.0 33.0 30.0 34.0 2 31.93463653081671 31.0 31.0 34.0 30.0 34.0 3 32.089345067981796 33.0 31.0 34.0 30.0 34.0 4 35.75205536269268 37.0 35.0 37.0 35.0 37.0 5 35.620526354664406 37.0 35.0 37.0 33.0 37.0 6 35.68181129488323 37.0 35.0 37.0 33.0 37.0 7 36.09608832425205 37.0 35.0 37.0 35.0 37.0 8 36.13524769464157 37.0 35.0 37.0 35.0 37.0 9 37.9656066468564 39.0 38.0 39.0 35.0 39.0 10 37.29377245463619 39.0 37.0 39.0 34.0 39.0 11 36.90385391158105 39.0 37.0 39.0 33.0 39.0 12 36.476338471503325 39.0 35.0 39.0 32.0 39.0 13 36.305305401991255 39.0 35.0 39.0 32.0 39.0 14 37.30112649594988 40.0 35.0 41.0 32.0 41.0 15 37.49885323924403 40.0 35.0 41.0 32.0 41.0 16 37.59929281508459 40.0 35.0 41.0 33.0 41.0 17 37.562814270211305 39.0 35.0 41.0 33.0 41.0 18 37.466002473442686 39.0 36.0 41.0 32.0 41.0 19 37.45929520140755 39.0 36.0 41.0 32.0 41.0 20 37.32687226922268 39.0 35.0 41.0 32.0 41.0 21 37.24065025406764 39.0 35.0 41.0 32.0 41.0 22 37.20875022963624 39.0 35.0 41.0 32.0 41.0 23 37.138663356117036 39.0 35.0 41.0 32.0 41.0 24 37.03713667759451 39.0 35.0 41.0 32.0 41.0 25 36.95098568395615 39.0 35.0 41.0 31.0 41.0 26 36.83891467759072 39.0 35.0 41.0 31.0 41.0 27 36.78688052665769 39.0 35.0 41.0 31.0 41.0 28 36.878613811507 39.0 35.0 41.0 31.0 41.0 29 36.871598779566256 39.0 35.0 41.0 31.0 41.0 30 36.888422356437104 39.0 35.0 41.0 31.0 41.0 31 36.76989786158948 39.0 35.0 41.0 31.0 41.0 32 36.658219840949684 39.0 35.0 41.0 31.0 41.0 33 36.601184828288915 39.0 35.0 41.0 30.0 41.0 34 36.45108700798661 39.0 35.0 41.0 30.0 41.0 35 36.3971021327288 39.0 35.0 41.0 30.0 41.0 36 36.269359991969836 39.0 35.0 41.0 30.0 41.0 37 36.065794333051144 38.0 35.0 41.0 29.0 41.0 38 36.1448204481363 38.0 35.0 41.0 30.0 41.0 39 36.07144669882521 38.0 35.0 41.0 30.0 41.0 40 35.966586743786564 38.0 35.0 41.0 29.0 41.0 41 35.91412172898568 38.0 35.0 41.0 29.0 41.0 42 35.91095890410959 38.0 35.0 41.0 29.0 41.0 43 35.86621534860201 38.0 35.0 40.0 29.0 41.0 44 35.74806963517667 38.0 35.0 40.0 29.0 41.0 45 35.70596618618243 38.0 35.0 40.0 29.0 41.0 46 35.53548140277912 38.0 34.0 40.0 28.0 41.0 47 35.583419032630125 38.0 34.0 40.0 28.0 41.0 48 35.42705048588187 38.0 34.0 40.0 28.0 41.0 49 35.425263584522234 38.0 34.0 40.0 28.0 41.0 50 35.30523059266035 37.0 34.0 40.0 28.0 41.0 51 34.60380694268469 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 2.0 14 11.0 15 25.0 16 74.0 17 184.0 18 361.0 19 716.0 20 1195.0 21 1862.0 22 2927.0 23 4140.0 24 6146.0 25 8755.0 26 11817.0 27 14471.0 28 16706.0 29 19522.0 30 23362.0 31 28545.0 32 36030.0 33 46537.0 34 75953.0 35 109345.0 36 75474.0 37 98402.0 38 155638.0 39 317613.0 40 202.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.51999492432894 23.172805766568374 30.84095157468907 13.466247734413617 2 28.62280756578013 26.130520502491432 32.121990344861544 13.12468158686689 3 27.87547181960914 25.305913346174023 33.138450291567004 13.680164542649841 4 25.64246063987546 27.86694923760769 31.75239437206563 14.738195750451224 5 23.069871915062055 33.34128774320135 29.69703167938425 13.891808662352345 6 22.216572066006453 41.50469026096146 25.628824508673148 10.649913164358942 7 91.16908992081575 2.750047821154564 4.847265860998581 1.2335963970311112 8 92.48223041652699 1.8565024459810346 4.5467028024143525 1.1145643350776218 9 88.76060824720791 4.245476876341122 5.256065711001138 1.7378491654498314 10 46.44523104719806 36.461405013929685 9.271148787236582 7.822215151635673 11 30.102422496586236 23.87809677486558 27.801230660841007 18.218250067707178 12 31.151647036319456 23.454997926171714 26.859864131103826 18.533490906405003 13 25.488296601004905 27.687880320221815 26.903139908600043 19.920683170173238 14 17.940035113037847 31.163957432543764 29.889736727972437 21.00627072644595 15 18.20499271792716 27.419892463954216 36.23366268378001 18.14145213433862 16 23.42043412138808 26.383451797223152 31.95258035374397 18.243533727644795 17 23.48274366535419 25.51954606834353 27.15644998475405 23.841260281548234 18 24.202333672342707 26.59803147294838 30.43101538041965 18.768619474289263 19 26.740926764505907 27.72575846245045 25.61291568893712 19.92039908410652 20 26.76800963619938 28.306051601393158 27.2549331545485 17.671005607858955 21 25.18839640990968 25.758935927228517 30.734229908959886 18.31843775390192 22 24.78897140010871 21.87121810423686 30.642564804766586 22.697245690887843 23 21.65446043533349 26.385913876468013 30.339539666937494 21.620086021261002 24 21.58571160718851 26.481082708817468 33.11524992945196 18.817955754542062 25 21.741106685681494 28.623754519335844 29.000642034510776 20.634496760471883 26 20.522093373408406 31.75457236524377 25.651456698654755 22.07187756269306 27 19.157627994977357 30.865004195004254 30.122024435189555 19.855343374828838 28 18.72676412712662 28.071585900997896 32.741392665655326 20.460257306220157 29 19.720591883850464 26.665075784693066 31.9058008480916 21.70853148336487 30 21.75739428683981 27.676043400775363 30.375429206699128 20.1911331056857 31 24.910654932018204 26.98997554965919 28.270730233764958 19.82863928455765 32 25.653729387188477 26.90777998102305 27.49545935770034 19.94303127408813 33 24.62997789810401 27.061091761693458 27.45833877831628 20.850591561886255 34 20.367266467048857 27.46364171822829 30.02732907961796 22.141762735104894 35 21.58059805798765 27.351048940453666 29.18037381938565 21.88797918217303 36 25.3913285568996 26.69092761676411 27.757481406566935 20.16026241976936 37 21.210623303769445 29.100450939283235 29.217683789480866 20.471241967466465 38 21.76269722675182 29.057269857142586 27.763257823256797 21.4167750928488 39 21.155984083604633 28.205485133776133 28.514854860428517 22.12367592219072 40 23.33994306915223 25.04616398584115 28.175182619993222 23.4387103250134 41 19.793886089062877 25.44634655848669 29.263137560155222 25.496629792295206 42 21.451717679054713 26.496139270353346 28.2152387554 23.83690429519194 43 21.515447653354393 26.518866155690528 28.312585580927596 23.65310061002748 44 21.35029895323754 27.438736839712956 29.023842396625817 22.187121810423687 45 20.21802658666803 29.64097202888587 26.71838926987987 23.42261211456623 46 22.407383207483207 28.552543611946007 27.73039853487346 21.309674645697328 47 21.07662937563564 26.825300326320196 29.1722300188065 22.925840279237665 48 21.15929842104964 27.54829936610929 30.439632657776666 20.852769555064402 49 22.239393646699206 25.834597516330216 29.562658969828163 22.363349867142414 50 20.89206812762661 27.919126378527636 28.826402580259046 22.362402913586703 51 20.393970557320046 29.495330572016766 28.02613213032354 22.084566740339653 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 631.0 1 1239.5 2 1848.0 3 5644.5 4 9441.0 5 6288.5 6 3136.0 7 3217.0 8 3298.0 9 3427.5 10 3557.0 11 3670.0 12 3783.0 13 3725.0 14 3667.0 15 3399.0 16 3131.0 17 3172.5 18 3214.0 19 3043.5 20 2873.0 21 3491.0 22 4109.0 23 4394.5 24 4680.0 25 6117.0 26 8353.5 27 9153.0 28 12189.5 29 15226.0 30 16789.0 31 18352.0 32 22136.0 33 25920.0 34 30048.0 35 34176.0 36 38171.0 37 42166.0 38 45079.5 39 47993.0 40 55424.0 41 62855.0 42 72395.0 43 81935.0 44 82293.5 45 82652.0 46 84945.5 47 87239.0 48 86279.5 49 85320.0 50 82832.0 51 80344.0 52 75349.5 53 70355.0 54 65876.0 55 61397.0 56 57820.0 57 54243.0 58 48545.0 59 42847.0 60 38374.5 61 33902.0 62 28616.0 63 23330.0 64 19871.5 65 16413.0 66 13587.0 67 10761.0 68 8376.5 69 5992.0 70 4919.5 71 3847.0 72 3028.5 73 2210.0 74 1692.0 75 966.5 76 759.0 77 509.5 78 260.0 79 191.0 80 122.0 81 97.5 82 73.0 83 61.5 84 50.0 85 35.5 86 21.0 87 14.0 88 7.0 89 3.5 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1056018.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.475666013649924 #Duplication Level Percentage of deduplicated Percentage of total 1 80.48099272709678 15.674209347999254 2 6.779173576568108 2.6405784085160224 3 2.039922393953211 1.1918654171519383 4 1.0507084900192343 0.8185299051728412 5 0.6793927470071944 0.6615813116404139 6 0.4830348621615162 0.5644455389044271 7 0.404138768747227 0.5509610178302087 8 0.35494257069799806 0.5530194368752428 9 0.28101220875734007 0.49256099311644236 >10 4.151804334038298 20.98858997787134 >50 2.4212652521851314 34.173536315572456 >100 0.8711663462910629 20.853512579448935 >500 0.0019565779815633086 0.2384461630609162 >1k 0.0 0.0 >5k 4.891444953908272E-4 0.5981635868395897 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6279 0.5945921376340176 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03655240725063399 0.0 2 0.0 0.0 0.0 0.15994045556041658 0.0 3 0.0 0.0 0.0 0.22802641621639025 0.0 4 0.0 0.0 0.0 0.3429865778803013 0.0 5 0.0 0.0 0.0 0.600747335746171 0.0 6 0.0 0.0 0.0 0.8124861508042477 0.0 7 0.0 0.0 0.0 0.948184595338337 0.0 8 0.0 0.0 0.0 1.2235586893405226 0.0 9 0.0 0.0 0.0 1.3094473768439554 0.0 10 9.469535557159063E-5 0.0 0.0 1.4782891958281015 0.0 11 9.469535557159063E-5 0.0 0.0 1.7653108185655926 0.0 12 9.469535557159063E-5 0.0 0.0 1.9696633958890852 0.0 13 9.469535557159063E-5 0.0 0.0 2.053184699503228 0.0 14 9.469535557159063E-5 0.0 0.0 2.0878431996424305 0.0 15 9.469535557159063E-5 0.0 0.0 2.1460808433189587 0.0 16 9.469535557159063E-5 0.0 0.0 2.2773286061411833 0.0 17 9.469535557159063E-5 0.0 0.0 2.458007344571778 0.0 18 1.8939071114318126E-4 0.0 0.0 2.641905725091807 0.0 19 1.8939071114318126E-4 0.0 0.0 2.7710701900914567 0.0 20 2.840860667147719E-4 0.0 0.0 2.9027914296915394 0.0 21 2.840860667147719E-4 0.0 0.0 3.065572745919104 0.0 22 2.840860667147719E-4 0.0 0.0 3.270682886087169 0.0 23 2.840860667147719E-4 0.0 0.0 3.4681227024539356 0.0 24 2.840860667147719E-4 0.0 0.0 3.6124384243450396 0.0 25 2.840860667147719E-4 0.0 0.0 3.748326259590272 0.0 26 2.840860667147719E-4 0.0 0.0 3.8768278571009205 0.0 27 2.840860667147719E-4 0.0 0.0 4.035063796261048 0.0 28 2.840860667147719E-4 0.0 0.0 4.187428623375738 0.0 29 2.840860667147719E-4 0.0 0.0 4.3697171828510495 0.0 30 2.840860667147719E-4 0.0 0.0 4.562706317505952 0.0 31 2.840860667147719E-4 0.0 0.0 4.732589785401386 0.0 32 2.840860667147719E-4 0.0 0.0 4.8829660100490715 0.0 33 2.840860667147719E-4 0.0 0.0 5.034005102185758 0.0 34 2.840860667147719E-4 0.0 0.0 5.215441403460926 0.0 35 2.840860667147719E-4 0.0 0.0 5.4084305381158275 0.0 36 2.840860667147719E-4 0.0 0.0 5.578692787433548 0.0 37 2.840860667147719E-4 0.0 0.0 5.759845002642001 0.0 38 2.840860667147719E-4 0.0 0.0 5.985219948902386 0.0 39 2.840860667147719E-4 0.0 0.0 6.364474847966607 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGT 25 3.8905888E-5 45.000004 21 CGACGGT 65 0.0 45.000004 28 ACCGCAC 25 3.8905888E-5 45.000004 10 CGCGATA 20 7.0330244E-4 45.000004 36 CCCGTAA 20 7.0330244E-4 45.000004 24 CCGTAAA 20 7.0330244E-4 45.000004 28 CATAGCG 20 7.0330244E-4 45.000004 24 CGTACGA 20 7.0330244E-4 45.000004 38 CGCGTCA 20 7.0330244E-4 45.000004 35 CAATCGA 20 7.0330244E-4 45.000004 13 GTGCGTA 20 7.0330244E-4 45.000004 33 CGATAGT 20 7.0330244E-4 45.000004 12 ATCGATA 20 7.0330244E-4 45.000004 10 ACGCGTC 20 7.0330244E-4 45.000004 11 GTCTACG 35 1.2118107E-7 45.0 1 GTTGCGC 35 1.2118107E-7 45.0 42 TCCGCGC 30 2.165334E-6 44.999996 31 ACGTACG 30 2.165334E-6 44.999996 37 TGTAGCG 100 0.0 42.750004 1 CATACGA 245 0.0 42.2449 18 >>END_MODULE