SRR1547720_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547720_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1449831
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6445	0.4445345698912494	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2402	0.1656744820603229	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGTCG	35	1.2122291E-7	45.000004	1
TCGTCCG	35	1.2122291E-7	45.000004	34
TCGTAAG	35	1.2122291E-7	45.000004	1
TCGAGTA	30	2.1658961E-6	45.000004	1
TGATCGC	20	7.0338976E-4	45.0	38
CGTATCG	25	3.891313E-5	45.0	41
ATAGCGC	20	7.0338976E-4	45.0	37
CGCTAGC	20	7.0338976E-4	45.0	29
TAGGACG	20	7.0338976E-4	45.0	1
ACGACGT	20	7.0338976E-4	45.0	12
ATCGATT	20	7.0338976E-4	45.0	27
TATCGCG	70	0.0	41.785717	1
CGTTTTT	4200	0.0	41.678574	1
TATAGCG	60	3.6379788E-12	41.250004	1
CGGGTAT	115	0.0	41.086956	6
AATGCGG	165	0.0	40.90909	2
ATATCGC	55	6.184564E-11	40.90909	23
TTAGTCG	55	6.184564E-11	40.90909	1
CGTAAGG	165	0.0	40.90909	2
CGGATTA	50	1.0822987E-9	40.5	25