SRR1547716_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547716_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1454366
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7245	0.4981552098990213	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2901	0.19946835940884206	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAT	20	7.0339034E-4	45.000004	5
GATCGTA	20	7.0339034E-4	45.000004	16
TAGGTCG	40	6.8175723E-9	45.000004	1
CCGGAAT	20	7.0339034E-4	45.000004	43
CGTTCGG	20	7.0339034E-4	45.000004	45
CGCTAAG	20	7.0339034E-4	45.000004	43
AGGTCGT	30	2.1659016E-6	45.000004	14
AATATCG	25	3.8913182E-5	45.0	30
CGAAGGC	25	3.8913182E-5	45.0	23
TCGTTAG	55	1.8189894E-12	44.999996	1
CGGTCTA	260	0.0	44.999996	31
CGTAAGG	170	0.0	43.676468	2
CGACAGG	105	0.0	42.857143	2
CTCACGA	305	0.0	42.786884	24
CGTTTTT	5375	0.0	42.613953	1
GTTAGCG	85	0.0	42.35294	1
TCGTAAG	75	0.0	42.0	1
TCACGAC	300	0.0	41.25	25
CACGACG	290	0.0	41.12069	26
CGAGGGC	285	0.0	41.05263	4