SRR1547714_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547714_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2013212
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9067	0.45037482391322925	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2435	0.12095099770913346	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATGCG	135	0.0	45.000004	1
CGAACGC	20	7.034552E-4	45.0	28
CGACGCA	25	3.891855E-5	45.0	31
CGTTACA	40	6.8193913E-9	45.0	16
CAGTCGT	20	7.034552E-4	45.0	18
CGTTTCG	20	7.034552E-4	45.0	44
TAGTACG	100	0.0	45.0	1
TACCGGA	25	3.891855E-5	45.0	14
TAATCGC	20	7.034552E-4	45.0	24
CGTTTTT	5810	0.0	42.947506	1
CGACGGT	445	0.0	42.47191	28
GCGTAAG	80	0.0	42.1875	1
TACGTAG	80	0.0	42.1875	1
TATCTCG	60	3.6379788E-12	41.250004	1
CGTTAGG	230	0.0	41.086956	2
CTATGCG	50	1.0822987E-9	40.5	1
TACGGGT	50	1.0822987E-9	40.5	4
TGTAACG	50	1.0822987E-9	40.5	1
CGATATC	50	1.0822987E-9	40.5	10
GGACGTA	95	0.0	40.263157	8